-
1
-
-
0033813317
-
Conformational changes studied by Cryo-electron microscopy
-
Saibil, H. R. 2000. Conformational changes studied by cryo-electron microscopy. Nat. Struct. Biol. 7:711-714.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 711-714
-
-
Saibil, H.R.1
-
2
-
-
14844311200
-
Fitting of high-resolution structures into electron microscopy reconstruction images
-
Fabiola, F., and M. S. Chapman. 2005. Fitting of high-resolution structures into electron microscopy reconstruction images. Structure. 13:389-400.
-
(2005)
Structure
, vol.13
, pp. 389-400
-
-
Fabiola, F.1
Chapman, M.S.2
-
3
-
-
0032780181
-
Situs: A package for docking crystal structures into low-resolution maps from electron microscopy
-
Wriggers, W., R. A. Milligan, and J. A. McCammon. 1999. SITUS: a package for docking crystal structures into low-resolution maps from electron microscopy. J. Struct. Biol. 125:185-195.
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 185-195
-
-
Wriggers, W.1
Milligan, R.A.2
McCammon, J.A.3
-
4
-
-
0032779888
-
Quantitative fitting of atomic models into observed densities derived by electron microscopy
-
Volkmann, N., and D. Hanein. 1999. Quantitative fitting of atomic models into observed densities derived by electron microscopy. J. Struct. Biol. 125:176-184.
-
(1999)
J. Struct. Biol.
, vol.125
, pp. 176-184
-
-
Volkmann, N.1
Hanein, D.2
-
5
-
-
0033780164
-
Fitting atomic models into electron-microscopy maps
-
Rossmann, M. G. 2000. Fitting atomic models into electron-microscopy maps. Acta Crystallogr. D Biol. Crystallogr. 56:1341-1349.
-
(2000)
Acta Crystallogr. D Biol. Crystallogr.
, vol.56
, pp. 1341-1349
-
-
Rossmann, M.G.1
-
6
-
-
0035783056
-
Combining electron microscopic with x-ray crystallographic structures
-
Rossmann, M. G., R. Bernal, and S. V. Pletnev. 2001. Combining electron microscopic with x-ray crystallographic structures. J. Struct. Biol. 136:190-200.
-
(2001)
J. Struct. Biol.
, vol.136
, pp. 190-200
-
-
Rossmann, M.G.1
Bernal, R.2
Pletnev, S.V.3
-
7
-
-
0035906702
-
Bridging the information gap: Computational tools for intermediate resolution structure interpretation
-
Jiang, W., M. L. Baker,..., W. Chiu. 2001. Bridging the information gap: computational tools for intermediate resolution structure interpretation. J. Mol. Biol. 308:1033-1044.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 1033-1044
-
-
Jiang, W.1
Baker, M.L.2
Chiu, W.3
-
8
-
-
0036297629
-
Multi-resolution contour-based fitting of macromolecular structures
-
Chacon, P., and W. Wriggers. 2002. Multi-resolution contour-based fitting of macromolecular structures. J. Mol. Biol. 317:375-384.
-
(2002)
J. Mol. Biol.
, vol.317
, pp. 375-384
-
-
Chacon, P.1
Wriggers, W.2
-
9
-
-
0037285752
-
A core-weighted fitting method for docking atomic structures into low-resolution maps: Application to Cryo-electron microscopy
-
Wu, X., J. L. Milne,..., B. R. Brooks. 2003. A core-weighted fitting method for docking atomic structures into low-resolution maps: application to cryo-electron microscopy. J. Struct. Biol. 141:63-76.
-
(2003)
J. Struct. Biol.
, vol.141
, pp. 63-76
-
-
Wu, X.1
Milne, J.L.2
Brooks, B.R.3
-
10
-
-
0033669710
-
Evidence for cleft closure in actomyosin upon adp release
-
Volkmann, N., D. Hanein,..., S. Lowey. 2000. Evidence for cleft closure in actomyosin upon ADP release. Nat. Struct. Biol. 7:1147-1155.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 1147-1155
-
-
Volkmann, N.1
Hanein, D.2
Lowey, S.3
-
11
-
-
0035836733
-
Three-dimensional image reconstruction of dephosphorylated smooth muscle heavy meromyosin reveals asymmetry in the interaction between myosin heads and placement of subfragment 2
-
Wendt, T., D. Taylor,..., K. Taylor. 2001. Three-dimensional image reconstruction of dephosphorylated smooth muscle heavy meromyosin reveals asymmetry in the interaction between myosin heads and placement of subfragment 2. Proc. Natl. Acad. Sci. USA. 98:4361-4366.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 4361-4366
-
-
Wendt, T.1
Taylor, D.2
Taylor, K.3
-
12
-
-
0347721768
-
A Cryo-electron microscopic study of ribosome-bound termination factor rf2
-
Rawat, U. B., A. V. Zavialov,..., J. Frank. 2003. A cryo-electron microscopic study of ribosome-bound termination factor RF2. Nature. 421:87-90.
-
(2003)
Nature
, vol.421
, pp. 87-90
-
-
Rawat, U.B.1
Zavialov, A.V.2
Frank, J.3
-
13
-
-
0038275890
-
Study of the structural dynamics of the e. Coli 70s ribosome using real-space refinement
-
Gao, H., J. Sengupta,..., J. Frank. 2003. Study of the structural dynamics of the E. coli 70S ribosome using real-space refinement. Cell. 113:789-801.
-
(2003)
Cell.
, vol.113
, pp. 789-801
-
-
Gao, H.1
Sengupta, J.2
Frank, J.3
-
14
-
-
14844303319
-
Molding atomic structures into intermediate-resolution cryo-EM density maps of ribosomal complexes using real-space refinement
-
Gao, H., and J. Frank. 2005. Molding atomic structures into intermediate-resolution cryo-EM density maps of ribosomal complexes using real-space refinement. Structure. 13:401-406.
-
(2005)
Structure
, vol.13
, pp. 401-406
-
-
Gao, H.1
Frank, J.2
-
15
-
-
33645106536
-
A structural model for the large subunit of the mammalian mitochondrial ribosome
-
Mears, J. A., M. R. Sharma,..., S. C. Harvey. 2006. A structural model for the large subunit of the mammalian mitochondrial ribosome. J. Mol. Biol. 358:193-212.
-
(2006)
J. Mol. Biol.
, vol.358
, pp. 193-212
-
-
Mears, J.A.1
Sharma, M.R.2
Harvey, S.C.3
-
16
-
-
38949092920
-
Protein structure fitting and refinement guided by cryo-EM density
-
Topf, M., K. Lasker,..., A. Sali. 2008. Protein structure fitting and refinement guided by cryo-EM density. Structure. 16:295-307.
-
(2008)
Structure
, vol.16
, pp. 295-307
-
-
Topf, M.1
Lasker, K.2
Sali, A.3
-
17
-
-
0000785338
-
Generic rigidity percolation: The pebble game
-
Jacobs, D. J., and M. F. Thorpe. 1995. Generic rigidity percolation: the pebble game. Phys. Rev. Lett. 75:4051-4054.
-
(1995)
Phys. Rev. Lett.
, vol.75
, pp. 4051-4054
-
-
Jacobs, D.J.1
Thorpe, M.F.2
-
18
-
-
0035427398
-
Protein flexibility predictions using graph theory
-
Jacobs, D. J., A. J. Rader,..., M. F. Thorpe. 2001. Protein flexibility predictions using graph theory. Proteins. 44:150-165.
-
(2001)
Proteins
, vol.44
, pp. 150-165
-
-
Jacobs, D.J.1
Rader, A.J.2
Thorpe, M.F.3
-
19
-
-
41449099769
-
Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations
-
Jolley, C. C., S. A. Wells,..., M. F. Thorpe. 2008. Fitting low-resolution cryo-EM maps of proteins using constrained geometric simulations. Biophys. J. 94:1613-1621.
-
(2008)
Biophys. J
, vol.94
, pp. 1613-1621
-
-
Jolley, C.C.1
Wells, S.A.2
Thorpe, M.F.3
-
20
-
-
33745813129
-
Flexible fitting in 3d-em guided by the structural variability of protein superfamilies
-
Velazquez-Muriel, J. A., M. Valle,..., J. M. Carazo. 2006. Flexible fitting in 3D-EM guided by the structural variability of protein superfamilies. Structure. 14:1115-1126.
-
(2006)
Structure
, vol.14
, pp. 1115-1126
-
-
Velazquez-Muriel, J.A.1
Valle, M.2
Carazo, J.M.3
-
21
-
-
34248151487
-
Flexible fitting in 3d-EM with incomplete data on superfamily variability
-
Velazquez-Muriel, J. A., and J. M. Carazo. 2007. Flexible fitting in 3D-EM with incomplete data on superfamily variability. J. Struct. Biol. 158:165-181.
-
(2007)
J. Struct. Biol.
, vol.158
, pp. 165-181
-
-
Velazquez-Muriel, J.A.1
Carazo, J.M.2
-
22
-
-
33645075435
-
Refinement of protein structures by iterative comparative modeling and cryoem density fitting
-
Topf, M., M. L. Baker,..., A. Sali. 2006. Refinement of protein structures by iterative comparative modeling and CryoEM density fitting. J. Mol. Biol. 357:1655-1668.
-
(2006)
J. Mol. Biol.
, vol.357
, pp. 1655-1668
-
-
Topf, M.1
Baker, M.L.2
Sali, A.3
-
23
-
-
0035783173
-
Using situs for flexible and rigid-body fitting of multiresolution single-molecule data
-
Wriggers, W., and S. Birmanns. 2001. Using SITUS for flexible and rigid-body fitting of multiresolution single-molecule data. J. Struct. Biol. 133:193-202.
-
(2001)
J. Struct. Biol.
, vol.133
, pp. 193-202
-
-
Wriggers, W.1
Birmanns, S.2
-
24
-
-
17044393884
-
Coarse-grained models for proteins
-
Tozzini, V. 2005. Coarse-grained models for proteins. Curr. Opin. Struct. Biol. 15:144-150.
-
(2005)
Curr. Opin. Struct. Biol.
, vol.15
, pp. 144-150
-
-
Tozzini, V.1
-
25
-
-
0032533790
-
Analysis of domain motions by approximate normal mode calculations
-
Hinsen, K. 1998. Analysis of domain motions by approximate normal mode calculations. Proteins. 33:417-429.
-
(1998)
Proteins
, vol.33
, pp. 417-429
-
-
Hinsen, K.1
-
26
-
-
0035132230
-
Anisotropy of fluctuation dynamics of proteins with an elastic network model
-
Atilgan, A. R., S. R. Durell,..., I. Bahar. 2001. Anisotropy of fluctuation dynamics of proteins with an elastic network model. Biophys. J. 80:505-515.
-
(2001)
Biophys. J
, vol.80
, pp. 505-515
-
-
Atilgan, A.R.1
Durell, S.R.2
Bahar, I.3
-
27
-
-
0035044995
-
Conformational change of proteins arising from normal mode calculations
-
Tama, F., and Y. H. Sanejouand. 2001. Conformational change of proteins arising from normal mode calculations. Protein Eng. 14:1-6.
-
(2001)
Protein Eng.
, vol.14
, pp. 1-6
-
-
Tama, F.1
Sanejouand, Y.H.2
-
28
-
-
0000197372
-
Large amplitude elastic motions in proteins from a single-parameter, atomic analysis
-
Tirion, M. M. 1996. Large amplitude elastic motions in proteins from a single-parameter, atomic analysis. Phys. Rev. Lett. 77:1905-1908.
-
(1996)
Phys. Rev. Lett.
, vol.77
, pp. 1905-1908
-
-
Tirion, M.M.1
-
29
-
-
46749096676
-
Yup. Scx: Coaxing atomic models into medium resolution electron density maps
-
Tan, R. K., B. Devkota, and S. C. Harvey. 2008. YUP. SCX: coaxing atomic models into medium resolution electron density maps. J. Struct. Biol. 163:163-174.
-
(2008)
J. Struct. Biol.
, vol.163
, pp. 163-174
-
-
Tan, R.K.1
Devkota, B.2
Harvey, S.C.3
-
30
-
-
36749078686
-
Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution
-
Schroder, G. F., A. T. Brunger, and M. Levitt. 2007. Combining efficient conformational sampling with a deformable elastic network model facilitates structure refinement at low resolution. Structure. 15:1630-1641.
-
(2007)
Structure
, vol.15
, pp. 1630-1641
-
-
Schroder, G.F.1
Brunger, A.T.2
Levitt, M.3
-
31
-
-
77951623055
-
Super-resolution biomolecular crystallography with low-resolution data
-
Schroder, G. F., M. Levitt, and A. T. Brunger. 2010. Super-resolution biomolecular crystallography with low-resolution data. Nature. 464:1218-1222.
-
(2010)
Nature
, vol.464
, pp. 1218-1222
-
-
Schroder, G.F.1
Levitt, M.2
Brunger, A.T.3
-
32
-
-
2342518038
-
On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models
-
Delarue, M., and P. Dumas. 2004. On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models. Proc. Natl. Acad. Sci. USA. 101:6957-6962.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6957-6962
-
-
Delarue, M.1
Dumas, P.2
-
33
-
-
1642355235
-
Flexible multiscale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis
-
Tama, F., O. Miyashita, and C. L. Brooks, 3rd. 2004. Flexible multiscale fitting of atomic structures into low-resolution electron density maps with elastic network normal mode analysis. J. Mol. Biol. 337:985-999.
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 985-999
-
-
Tama, F.1
Miyashita, O.2
Brooks III, C.L.3
-
34
-
-
4344716056
-
Nmff: Flexible high-resolution annotation of low-resolution experimental data from cryo-EM maps using normal mode analysis
-
Tama, F., O. Miyashita, and C. L. Brooks, 3rd. 2004. NMFF: flexible high-resolution annotation of low-resolution experimental data from cryo-EM maps using normal mode analysis. J. Struct. Biol. 147:315-326.
-
(2004)
J. Struct. Biol.
, vol.147
, pp. 315-326
-
-
Tama, F.1
Miyashita, O.2
Brooks III, C.L.3
-
35
-
-
17044432465
-
Normal mode-based fitting of atomic structure into electron density maps: Application to sarcoplasmic reticulum ca-atpase
-
Hinsen, K., N. Reuter,..., J. J. Lacapere. 2005. Normal mode-based fitting of atomic structure into electron density maps: application to sarcoplasmic reticulum Ca-ATPase. Biophys. J. 88:818-827.
-
(2005)
Biophys. J
, vol.88
, pp. 818-827
-
-
Hinsen, K.1
Reuter, N.2
Lacapere, J.J.3
-
36
-
-
33748351384
-
Norma: A tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps
-
Suhre, K., J. Navaza, and Y. H. Sanejouand. 2006. NORMA: a tool for flexible fitting of high-resolution protein structures into low-resolution electron-microscopy-derived density maps. Acta Crystallogr. D Biol. Crystallogr. 62:1098-1100.
-
(2006)
Acta Crystallogr. D Biol. Crystallogr.
, vol.62
, pp. 1098-1100
-
-
Suhre, K.1
Navaza, J.2
Sanejouand, Y.H.3
-
37
-
-
27844444793
-
Structure of the e. Coli protein-conducting channel bound to a translating ribosome
-
Mitra, K., C. Schaffitzel,..., J. Frank. 2005. Structure of the E. coli protein-conducting channel bound to a translating ribosome. Nature. 438:318-324.
-
(2005)
Nature
, vol.438
, pp. 318-324
-
-
Mitra, K.1
Schaffitzel, C.2
Frank, J.3
-
38
-
-
19844377583
-
The 13 ångstroms structure of a chaperonin groel-protein substrate complex by Cryo-electron microscopy
-
Falke, S., F. Tama,..., M. T. Fisher. 2005. The 13 Ångstroms structure of a chaperonin GroEL-protein substrate complex by cryo-electron microscopy. J. Mol. Biol. 348:219-230.
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 219-230
-
-
Falke, S.1
Tama, F.2
Fisher, M.T.3
-
39
-
-
33748211202
-
Model of the toxic complex of anthrax: Responsive conformational changes in both the lethal factor and the protective antigen heptamer
-
Tama, F., G. Ren,..., A. K. Mitra. 2006. Model of the toxic complex of anthrax: responsive conformational changes in both the lethal factor and the protective antigen heptamer. Protein Sci. 15:2190-2200.
-
(2006)
Protein Sci.
, vol.15
, pp. 2190-2200
-
-
Tama, F.1
Ren, G.2
Mitra, A.K.3
-
40
-
-
41449111298
-
Normal-mode flexible fitting of high-resolution structure of biological molecules toward one-dimensional low-resolution data
-
Gorba, C., O. Miyashita, and F. Tama. 2008. Normal-mode flexible fitting of high-resolution structure of biological molecules toward one-dimensional low-resolution data. Biophys. J. 94:1589-1599.
-
(2008)
Biophys. J
, vol.94
, pp. 1589-1599
-
-
Gorba, C.1
Miyashita, O.2
Tama, F.3
-
41
-
-
17844411211
-
Normal-modes-based prediction of protein conformational changes guided by distance constraints
-
Zheng, W., and B. R. Brooks. 2005. Normal-modes-based prediction of protein conformational changes guided by distance constraints. Biophys. J. 88:3109-3117.
-
(2005)
Biophys. J
, vol.88
, pp. 3109-3117
-
-
Zheng, W.1
Brooks, B.R.2
-
42
-
-
33744811942
-
Modeling protein conformational changes by iterative fitting of distance constraints using reoriented normal modes
-
Zheng, W., and B. R. Brooks. 2006. Modeling protein conformational changes by iterative fitting of distance constraints using reoriented normal modes. Biophys. J. 90:4327-4336.
-
(2006)
Biophys. J
, vol.90
, pp. 4327-4336
-
-
Zheng, W.1
Brooks, B.R.2
-
43
-
-
36749079267
-
Transfer RNA in the hybrid p/e state: Correlating molecular dynamics simulations with cryo-EM data
-
Li, W., and J. Frank. 2007. Transfer RNA in the hybrid P/E state: correlating molecular dynamics simulations with cryo-EM data. Proc. Natl. Acad. Sci. USA. 104:16540-16545.
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 16540-16545
-
-
Li, W.1
Frank, J.2
-
44
-
-
0001832403
-
Restrained real-space macromolecular atomic refinement using a new resolution-dependent electron-density function
-
Chapman, M. S. 1995. Restrained real-space macromolecular atomic refinement using a new resolution-dependent electron-density function. Acta Crystallogr. A. 51:69-80.
-
(1995)
Acta Crystallogr. A
, vol.51
, pp. 69-80
-
-
Chapman, M.S.1
-
45
-
-
0344120716
-
Low-resolution structure refinement in electron microscopy
-
Chen, J. Z., J. Furst,..., N. Grigorieff. 2003. Low-resolution structure refinement in electron microscopy. J. Struct. Biol. 144:144-151.
-
(2003)
J. Struct. Biol.
, vol.144
, pp. 144-151
-
-
Chen, J.Z.1
Furst, J.2
Grigorieff, N.3
-
46
-
-
33846100102
-
Atomic model construction of protein complexes from electron micrographs and visualization of their 3d structure using a virtual reality system
-
Noda, K., M. Nakamura,..., T. Yasunaga. 2006. Atomic model construction of protein complexes from electron micrographs and visualization of their 3D structure using a virtual reality system. J. Plasma Phys. 72:1037-1040.
-
(2006)
J. Plasma Phys.
, vol.72
, pp. 1037-1040
-
-
Noda, K.1
Nakamura, M.2
Yasunaga, T.3
-
47
-
-
42949089487
-
Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics
-
Trabuco, L. G., E. Villa,..., K. Schulten. 2008. Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics. Structure. 16:673-683.
-
(2008)
Structure
, vol.16
, pp. 673-683
-
-
Trabuco, L.G.1
Villa, E.2
Schulten, K.3
-
48
-
-
70349267547
-
Molecular dynamics flexible fitting: A practical guide to combine Cryo-electron microscopy and x-ray crystallography
-
Trabuco, L. G., E. Villa,..., K. Schulten. 2009. Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and x-ray crystallography. Methods. 49:174-180.
-
(2009)
Methods
, vol.49
, pp. 174-180
-
-
Trabuco, L.G.1
Villa, E.2
Schulten, K.3
-
49
-
-
58749105833
-
Flexible fitting of high-resolution x-ray structures into cryoelectron microscopy maps using biased molecular dynamics simulations
-
Orzechowski, M., and F. Tama. 2008. Flexible fitting of high-resolution x-ray structures into cryoelectron microscopy maps using biased molecular dynamics simulations. Biophys. J. 95:5692-5705.
-
(2008)
Biophys. J
, vol.95
, pp. 5692-5705
-
-
Orzechowski, M.1
Tama, F.2
-
50
-
-
72449146926
-
Conformational fitting of atomic models to cryogenic-electron microscopy maps using maxwell's demon molecular dynamics. Biophysical Society meeting abstracts
-
Caulfield, T. R., and S. C. Harvey. 2007. Conformational fitting of atomic models to cryogenic-electron microscopy maps using Maxwell's demon molecular dynamics. Biophysical Society Meeting Abstracts. Biophys. J. (Suppl.): 368a.
-
(2007)
Biophys. J
, Issue.SUPPL.
-
-
Caulfield, T.R.1
Harvey, S.C.2
-
51
-
-
72449186057
-
Biased coarse-grained molecular dynamics simulation approach for flexible fitting of x-ray structure into Cryo electron microscopy maps
-
Grubisic, I., M. N. Shokhirev,..., F. Tama. 2010. Biased coarse-grained molecular dynamics simulation approach for flexible fitting of x-ray structure into cryo electron microscopy maps. J. Struct. Biol. 169:95-105.
-
(2010)
J. Struct. Biol.
, vol.169
, pp. 95-105
-
-
Grubisic, I.1
Shokhirev, M.N.2
Tama, F.3
-
52
-
-
61649124866
-
Allostery wiring diagrams in the transitions that drive the groel reaction cycle
-
Tehver, R., J. Chen, and D. Thirumalai. 2009. Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle. J. Mol. Biol. 387:390-406.
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 390-406
-
-
Tehver, R.1
Chen, J.2
Thirumalai, D.3
-
53
-
-
56349128770
-
Algorithm 887: Cholmod, supernodal sparse cholesky factorization and update/downdate
-
Chen, Y., T. A. Davis,..., S. Rajamanickam. 2008. Algorithm 887: CHOLMOD, Supernodal Sparse Cholesky Factorization and Update/Downdate. ACM Trans. Math. Softw. 35:1-14.
-
(2008)
ACM Trans. Math. Softw.
, vol.35
, pp. 1-14
-
-
Chen, Y.1
Davis, T.A.2
Rajamanickam, S.3
-
54
-
-
77955833735
-
Predicting order of conformational changes during protein conformational transitions using an interpolated elastic network model
-
Tekpinar, M., and W. Zheng. 2010. Predicting order of conformational changes during protein conformational transitions using an interpolated elastic network model. Proteins. 78:2469-2481.
-
(2010)
Proteins
, vol.78
, pp. 2469-2481
-
-
Tekpinar, M.1
Zheng, W.2
-
55
-
-
0345687171
-
A comparative study of motorprotein motions by using a simple elastic-network model
-
Zheng, W., and S. Doniach. 2003. A comparative study of motorprotein motions by using a simple elastic-network model. Proc. Natl. Acad. Sci. USA. 100:13253-13258.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 13253-13258
-
-
Zheng, W.1
Doniach, S.2
-
56
-
-
23244442698
-
Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: Myosin versus kinesin
-
Zheng, W., and B. R. Brooks. 2005. Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin. Biophys. J. 89:167-178.
-
(2005)
Biophys. J
, vol.89
, pp. 167-178
-
-
Zheng, W.1
Brooks, B.R.2
-
57
-
-
33747858757
-
Nomad-ref: Visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis
-
Lindahl, E., C. Azuara,..., M. Delarue. 2006. NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis. Nucleic Acids Res. 34: W52-W56.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Lindahl, E.1
Azuara, C.2
Delarue, M.3
-
58
-
-
0032883413
-
Structural mechanism of muscle contraction
-
Geeves, M. A., and K. C. Holmes. 1999. Structural mechanism of muscle contraction. Annu. Rev. Biochem. 68:687-728.
-
(1999)
Annu. Rev. Biochem.
, vol.68
, pp. 687-728
-
-
Geeves, M.A.1
Holmes, K.C.2
-
59
-
-
0141843643
-
Electron cryomicroscopy shows how strong binding of myosin to actin releases nucleotide
-
Holmes, K. C., I. Angert,..., R. R. Schroder. 2003. Electron cryomicroscopy shows how strong binding of myosin to actin releases nucleotide. Nature. 425:423-427.
-
(2003)
Nature
, vol.425
, pp. 423-427
-
-
Holmes, K.C.1
Angert, I.2
Schroder, R.R.3
-
60
-
-
1942423619
-
Mmtsb tool set: Enhanced sampling and multiscale modeling methods for applications in structural biology
-
Feig, M., J. Karanicolas, and C. L. Brooks, 3rd. 2004. MMTSB Tool Set: enhanced sampling and multiscale modeling methods for applications in structural biology. J. Mol. Graph. Model. 22:377-395.
-
(2004)
J. Mol. Graph. Model
, vol.22
, pp. 377-395
-
-
Feig, M.1
Karanicolas, J.2
Brooks III, C.L.3
-
61
-
-
55949095660
-
Damped-dynamics flexible fitting
-
Kovacs, J. A., M. Yeager, and R. Abagyan. 2008. Damped-dynamics flexible fitting. Biophys. J. 95:3192-3207.
-
(2008)
Biophys. J
, vol.95
, pp. 3192-3207
-
-
Kovacs, J.A.1
Yeager, M.2
Abagyan, R.3
|