-
1
-
-
29144531173
-
The druggable genome: An update
-
Russ, A.; Lampel, S. The druggable genome: An update Drug Discovery Today 2005, 10, 1607-1610
-
(2005)
Drug Discovery Today
, vol.10
, pp. 1607-1610
-
-
Russ, A.1
Lampel, S.2
-
2
-
-
18744405409
-
Trends in exploration of therapeutic targets
-
Zheng, C. J.; Han, L. Y.; Yap, C. W.; Xie, B.; Chen, Y. Z. Trends in exploration of therapeutic targets Drug News Perspect. 2005, 18, 109-127
-
(2005)
Drug News Perspect.
, vol.18
, pp. 109-127
-
-
Zheng, C.J.1
Han, L.Y.2
Yap, C.W.3
Xie, B.4
Chen, Y.Z.5
-
3
-
-
33751547539
-
How many drug targets are there
-
Overington, J. P.; Al-Lazikani, B.; Hopkins, A. L. How many drug targets are there Nat. Rev. Drug Discovery 2006, 5, 993-996
-
(2006)
Nat. Rev. Drug Discovery
, vol.5
, pp. 993-996
-
-
Overington, J.P.1
Al-Lazikani, B.2
Hopkins, A.L.3
-
4
-
-
33749234216
-
Drugs, their targets and the nature of number of drug targets
-
Imming, P.; Sinning, C.; Meyer, A. Drugs, their targets and the nature of number of drug targets Nat. Rev. Drug Discovery 2007, 5, 821-834
-
(2007)
Nat. Rev. Drug Discovery
, vol.5
, pp. 821-834
-
-
Imming, P.1
Sinning, C.2
Meyer, A.3
-
5
-
-
42949151886
-
A structural biology view of target drugability
-
Egner, U.; Hillig, R. C. A structural biology view of target drugability Expert Opin. Drug Discovery 2008, 3, 391-401
-
(2008)
Expert Opin. Drug Discovery
, vol.3
, pp. 391-401
-
-
Egner, U.1
Hillig, R.C.2
-
6
-
-
54849423239
-
Predicting selectivity and druggability in drug discovery
-
Cheng, A. C. Predicting selectivity and druggability in drug discovery Annu. Rep. Comput. Chem. 2008, 4, 23-37
-
(2008)
Annu. Rep. Comput. Chem.
, vol.4
, pp. 23-37
-
-
Cheng, A.C.1
-
8
-
-
58849145512
-
Predicting druggable binding sites at the protein-protein interface
-
Fuller, J. C.; Burgoyne, N. J.; Jackson, R. M. Predicting druggable binding sites at the protein-protein interface Drug Discovery Today 2009, 14, 155-161
-
(2009)
Drug Discovery Today
, vol.14
, pp. 155-161
-
-
Fuller, J.C.1
Burgoyne, N.J.2
Jackson, R.M.3
-
10
-
-
33947600314
-
Support vector machines approach for predicting druggable proteins: Recent progress in its exploration and investigation of its usefulness
-
Han, L. Y.; Zheng, C. J.; Xie, B.; Jia, J.; Ma, X. H.; Zhu, F.; Lin, H. H.; Chen, X.; Chen, Y. Z. Support vector machines approach for predicting druggable proteins: Recent progress in its exploration and investigation of its usefulness Drug Discovery Today 2007, 12, 304-313
-
(2007)
Drug Discovery Today
, vol.12
, pp. 304-313
-
-
Han, L.Y.1
Zheng, C.J.2
Xie, B.3
Jia, J.4
Ma, X.H.5
Zhu, F.6
Lin, H.H.7
Chen, X.8
Chen, Y.Z.9
-
11
-
-
34249650211
-
Druggability of human disease genes
-
Sakharkar, M. K.; Sakharkar, K. R.; Pervaiz, S. Druggability of human disease genes Int. J. Biochem. Cell Biol. 2007, 39, 1156-1164
-
(2007)
Int. J. Biochem. Cell Biol.
, vol.39
, pp. 1156-1164
-
-
Sakharkar, M.K.1
Sakharkar, K.R.2
Pervaiz, S.3
-
12
-
-
17144373303
-
Druggability indices for protein targets derived from NMR-based screening data
-
Hajduk, P. J.; Huth, J. R.; Fesik, S. W. Druggability indices for protein targets derived from NMR-based screening data J. Med. Chem. 2005, 48, 2518-2525
-
(2005)
J. Med. Chem.
, vol.48
, pp. 2518-2525
-
-
Hajduk, P.J.1
Huth, J.R.2
Fesik, S.W.3
-
13
-
-
33746076877
-
Hajduk PJ Effects of conformational dynamics on predicted protein druggability
-
Brown, S. P. Hajduk PJ Effects of conformational dynamics on predicted protein druggability ChemMedChem 2006, 1, 70-72
-
(2006)
ChemMedChem
, vol.1
, pp. 70-72
-
-
Brown, S.P.1
-
14
-
-
33845806987
-
Structure-based identification of small molecule binding sites using a free energy model
-
Coleman, R. G.; Salzberg, A. C.; Cheng, A. C. Structure-based identification of small molecule binding sites using a free energy model J. Chem. Inf. Model. 2006, 46, 2631-2637
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 2631-2637
-
-
Coleman, R.G.1
Salzberg, A.C.2
Cheng, A.C.3
-
15
-
-
33846155913
-
Structure-based maximal affinity model predicts small-molecule druggability
-
Cheng, A. C.; Coleman, R. G.; Smyth, K. T.; Cao, Q.; Soulard, P.; Carffrey, D. R.; Salzberg, A. C.; Huang, E. S. Structure-based maximal affinity model predicts small-molecule druggability Nat. Biotechnol. 2007, 25, 71-75
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 71-75
-
-
Cheng, A.C.1
Coleman, R.G.2
Smyth, K.T.3
Cao, Q.4
Soulard, P.5
Carffrey, D.R.6
Salzberg, A.C.7
Huang, E.S.8
-
16
-
-
37249021821
-
Identification of the druggable concavity in homology models using the PLB index
-
Soga, S.; Shirai, H.; Kobori, M.; Hirayama, N. Identification of the druggable concavity in homology models using the PLB index J. Chem. Inf. Model. 2007, 47, 2287-2292
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 2287-2292
-
-
Soga, S.1
Shirai, H.2
Kobori, M.3
Hirayama, N.4
-
17
-
-
33749618171
-
Interrogating the druggable genome with structural informatics
-
Hambly, K.; Danzer, J.; Muskal, S.; Debe, D. A. Interrogating the druggable genome with structural informatics Mol. Diversity 2006, 10, 273-281
-
(2006)
Mol. Diversity
, vol.10
, pp. 273-281
-
-
Hambly, K.1
Danzer, J.2
Muskal, S.3
Debe, D.A.4
-
18
-
-
60349119258
-
Form follows function: Shape analysis of protein cavities for receptor-based drug design
-
Weisel, M.; Proschak, E.; Kriegl, J. M.; Schneider, G. Form follows function: Shape analysis of protein cavities for receptor-based drug design Proteomics 2009, 9, 451-459
-
(2009)
Proteomics
, vol.9
, pp. 451-459
-
-
Weisel, M.1
Proschak, E.2
Kriegl, J.M.3
Schneider, G.4
-
19
-
-
67651005599
-
Structural models in the assessment of protein druggability based on HTS data
-
Gupta, A.; Gupta, A. K.; Seshadri, K. Structural models in the assessment of protein druggability based on HTS data J. Comput.-Aided Mol. Des. 2009, 23, 583-592
-
(2009)
J. Comput.-Aided Mol. Des.
, vol.23
, pp. 583-592
-
-
Gupta, A.1
Gupta, A.K.2
Seshadri, K.3
-
20
-
-
65449159794
-
Binding site detection and druggability index from first principles
-
Seco, J.; Luque, F. J.; Barril, X. Binding site detection and druggability index from first principles J. Med. Chem. 2009, 52, 2363-2371
-
(2009)
J. Med. Chem.
, vol.52
, pp. 2363-2371
-
-
Seco, J.1
Luque, F.J.2
Barril, X.3
-
21
-
-
65249117514
-
Identifying and characterizing binding sites and assessing druggability
-
Halgren, T. A. Identifying and characterizing binding sites and assessing druggability J. Chem. Inf. Model. 2009, 49, 377-389
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 377-389
-
-
Halgren, T.A.1
-
22
-
-
77955397914
-
Understanding and predicting druggability. A high-throughput method for detection of drug binding sites
-
Schmidtke, P.; Barril, X. Understanding and predicting druggability. A high-throughput method for detection of drug binding sites J. Med. Chem. 2010, 53, 5858-5867
-
(2010)
J. Med. Chem.
, vol.53
, pp. 5858-5867
-
-
Schmidtke, P.1
Barril, X.2
-
24
-
-
44449159422
-
Quantifying the relationship among drug classes
-
Hert, J.; Keiser, M. J.; Irwin, J. J.; Oprea, T. I.; Shoichet, B. K. Quantifying the relationship among drug classes J. Chem. Inf. Model. 2008, 48, 755-765
-
(2008)
J. Chem. Inf. Model.
, vol.48
, pp. 755-765
-
-
Hert, J.1
Keiser, M.J.2
Irwin, J.J.3
Oprea, T.I.4
Shoichet, B.K.5
-
25
-
-
41149096945
-
Large scale prediction of drug-target relationships
-
Kuhn, M.; Campillos, M.; González, P.; Jensen, L. J.; Bork, P. Large scale prediction of drug-target relationships FEBS Lett. 2008, 582, 1283-1290
-
(2008)
FEBS Lett.
, vol.582
, pp. 1283-1290
-
-
Kuhn, M.1
Campillos, M.2
González, P.3
Jensen, L.J.4
Bork, P.5
-
26
-
-
20444498116
-
Kinomics: Characterizing the therapeutically validated kinase space
-
Vieth, M.; Sutherland, J. J.; Robertson, D. H.; Cambell, R. M. Kinomics: characterizing the therapeutically validated kinase space Drug Discovery Today 2005, 10, 839-846
-
(2005)
Drug Discovery Today
, vol.10
, pp. 839-846
-
-
Vieth, M.1
Sutherland, J.J.2
Robertson, D.H.3
Cambell, R.M.4
-
27
-
-
0033954256
-
The Protein Data Bank
-
Berman, H. M.; Westbrook, J.; Feng, Z.; Gilliland, G.; Bhat, T. N.; Weissig, H.; Shindyalov, I. N.; Bourne, P. E. The Protein Data Bank Nucleic Acids Res. 2000, 28, 235-242
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
28
-
-
29144482496
-
Abagayan Comprehensive identification of "druggable" protein ligand binding sites
-
An, J.; Totrov, M.; Abagayan Comprehensive identification of "druggable" protein ligand binding sites Genome Inf. 2004, 15, 31-41
-
(2004)
Genome Inf.
, vol.15
, pp. 31-41
-
-
An, J.1
Totrov, M.2
-
29
-
-
37249062102
-
Binding response: A descriptor for selecting ligand binding site on protein surface
-
Zhong, S.; MacKerrel, A. D., Jr. Binding response: A descriptor for selecting ligand binding site on protein surface. J. Chem. Inf. Model. 2007, 47, 2303-2315
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 2303-2315
-
-
Zhong, S.1
Mackerrel Jr., A.D.2
-
30
-
-
33947420470
-
New method for fast and accurate binding-side identification and analysis
-
Halgren, T. A. New method for fast and accurate binding-side identification and analysis Chem. Biol. Drug Des. 2007, 69, 146-148
-
(2007)
Chem. Biol. Drug Des.
, vol.69
, pp. 146-148
-
-
Halgren, T.A.1
-
31
-
-
33947658802
-
Identification of hot spots within druggable binding regions by computational solvent mapping of proteins
-
Landon, M. R.; Lancia, D. R., Jr.; Yu, J.; Thiel, S. P.; Vajda, S. Identification of hot spots within druggable binding regions by computational solvent mapping of proteins J. Med. Chem. 2007, 50, 1231-1240
-
(2007)
J. Med. Chem.
, vol.50
, pp. 1231-1240
-
-
Landon, M.R.1
Lancia Jr., D.R.2
Yu, J.3
Thiel, S.P.4
Vajda, S.5
-
32
-
-
41349095752
-
New method for the assessment of all drug-like pockets across a structural genome
-
Nicola, G.; Smith, C. A.; Abagyan, R. New method for the assessment of all drug-like pockets across a structural genome J. Comput. Biol. 2008, 15, 231-240
-
(2008)
J. Comput. Biol.
, vol.15
, pp. 231-240
-
-
Nicola, G.1
Smith, C.A.2
Abagyan, R.3
-
33
-
-
75949102748
-
EasyMIFS and SiteHound: A toolkit for the identification of ligand-binding sites in protein structures
-
Ghersi, D.; Sanchez, R. EasyMIFS and SiteHound: A toolkit for the identification of ligand-binding sites in protein structures Bioinformatics 2009, 25, 3185-3186
-
(2009)
Bioinformatics
, vol.25
, pp. 3185-3186
-
-
Ghersi, D.1
Sanchez, R.2
-
34
-
-
67650267001
-
Merging chemical and biological space: Structural mapping of enzyme binding pocket space
-
Weskamp, N.; Hullermeier, E.; Klebe, G. Merging chemical and biological space: Structural mapping of enzyme binding pocket space Proteins 2009, 76, 317-330
-
(2009)
Proteins
, vol.76
, pp. 317-330
-
-
Weskamp, N.1
Hullermeier, E.2
Klebe, G.3
-
35
-
-
67649422714
-
Fpocket: An open source platform for ligand pocket detection
-
Le Guilloux, V.; Schmitdke, P.; Tuffery, P. Fpocket: An open source platform for ligand pocket detection BMC Bioinf. 2009, 10, 168
-
(2009)
BMC Bioinf.
, vol.10
, pp. 168
-
-
Le Guilloux, V.1
Schmitdke, P.2
Tuffery, P.3
-
36
-
-
76649139794
-
Computational approaches to identifying and characterizing protein binding sites for ligand design
-
Henrich, S.; Salo-Ahen, O. M. H.; Huang, B.; Rippmann, F. F.; Cruciani, G.; Wade, R. C. Computational approaches to identifying and characterizing protein binding sites for ligand design J. Mol. Recognit. 2010, 23, 209-219
-
(2010)
J. Mol. Recognit.
, vol.23
, pp. 209-219
-
-
Henrich, S.1
Salo-Ahen, O.M.H.2
Huang, B.3
Rippmann, F.F.4
Cruciani, G.5
Wade, R.C.6
-
37
-
-
77949806523
-
Pharmacophore screening of the Protein Data Bank for specific binding site chemistry
-
Campagna-Slater, V.; Arrowsmith, A. G.; Zhao, Y.; Schapira, M. Pharmacophore screening of the Protein Data Bank for specific binding site chemistry J. Chem. Inf. Model. 2010, 50, 358-367
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 358-367
-
-
Campagna-Slater, V.1
Arrowsmith, A.G.2
Zhao, Y.3
Schapira, M.4
-
38
-
-
75749155406
-
Alignment-free ultra-high-throughput comparison of druggable protein-ligand binding sites
-
Weill, N.; Rognan, D. Alignment-free ultra-high-throughput comparison of druggable protein-ligand binding sites J. Chem. Inf. Model. 2010, 50, 123-135
-
(2010)
J. Chem. Inf. Model.
, vol.50
, pp. 123-135
-
-
Weill, N.1
Rognan, D.2
-
40
-
-
0027662829
-
PATTY: A programmable atom typer and language for automatic classification of atoms in molecular databases
-
Bush, B. L.; Sheridan, R. P. PATTY: A programmable atom typer and language for automatic classification of atoms in molecular databases J. Chem. Inf. Comput. Sci. 1993, 33, 756-762
-
(1993)
J. Chem. Inf. Comput. Sci.
, vol.33
, pp. 756-762
-
-
Bush, B.L.1
Sheridan, R.P.2
-
41
-
-
0028464119
-
Computer automated log P calculations based on an extended group-contribution approach
-
Klopman, G.; Li, J.-Y.; Wang, S.; Dimayuga, M. Computer automated log P calculations based on an extended group-contribution approach J. Chem. Inf. Comput. Sci. 1994, 34, 752-781
-
(1994)
J. Chem. Inf. Comput. Sci.
, vol.34
, pp. 752-781
-
-
Klopman, G.1
Li, J.-Y.2
Wang, S.3
Dimayuga, M.4
-
43
-
-
38549115559
-
Binding MOAD, a high-quality protein-ligand database
-
Benson, M. L.; Smith, R. D.; Khazanov, N. A.; Dimcheff, B; Beaver, J.; Dresslar, P.; Nerothin, J.; Carlson, H. A. Binding MOAD, a high-quality protein-ligand database Nucleic Acids Res. 2008, 36, D674-D678
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Benson, M.L.1
Smith, R.D.2
Khazanov, N.A.3
Dimcheff, B.4
Beaver, J.5
Dresslar, P.6
Nerothin, J.7
Carlson, H.A.8
-
44
-
-
34547673017
-
Comparison of topological, shape, and docking methods in virtual screening
-
McGaughey, G. B.; Sheridan, R. P.; Bayly, C. I.; Culberson, J. C.; Kreatsoulas, C.; Lindsley, S.; Maiorov, V.; Truchon, J.-F.; Cornell, W. D. Comparison of topological, shape, and docking methods in virtual screening J. Chem. Inf. Model. 2007, 47, 1504-1519
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 1504-1519
-
-
McGaughey, G.B.1
Sheridan, R.P.2
Bayly, C.I.3
Culberson, J.C.4
Kreatsoulas, C.5
Lindsley, S.6
Maiorov, V.7
Truchon, J.-F.8
Cornell, W.D.9
-
45
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F.; Madden, T. L.; Schaffer, A. A.; Zhang, J.; Zhang, Z.; Miller, W.; Lipman, D. J. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids. Res. 1997, 25, 3389-3402
-
(1997)
Nucleic Acids. Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
46
-
-
12944270496
-
HIV-1 integrase inhibitors that compete with the target DNA substrate define a unique strand transfer conformation for integrase
-
Espeseth, A. S.; Felock, P.; Wolfe, A.; Witmer, M.; Grobler, J.; Anthony, N.; Egbertson, M.; Melamed, J. Y.; Young, S.; Hamil, T.; Cole, J. L.; Hazuda, D. J. HIV-1 integrase inhibitors that compete with the target DNA substrate define a unique strand transfer conformation for integrase Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 11244-11249
-
(2000)
Proc. Natl. Acad. Sci. U.S.A.
, vol.97
, pp. 11244-11249
-
-
Espeseth, A.S.1
Felock, P.2
Wolfe, A.3
Witmer, M.4
Grobler, J.5
Anthony, N.6
Egbertson, M.7
Melamed, J.Y.8
Young, S.9
Hamil, T.10
Cole, J.L.11
Hazuda, D.J.12
-
47
-
-
77949365510
-
Retroviral intasome assembly and inhibition of DNA strand transfer
-
Hare, S.; Gupta, S. S.; Valkov, E.; Engleman, A.; Cherepanov, P. Retroviral intasome assembly and inhibition of DNA strand transfer Nature 2010, 464, 232-237
-
(2010)
Nature
, vol.464
, pp. 232-237
-
-
Hare, S.1
Gupta, S.S.2
Valkov, E.3
Engleman, A.4
Cherepanov, P.5
|