-
1
-
-
0026640513
-
Synthesis of 2′-deoxy-7,8-dihydro-8-oxoguanosine and 2′-deoxy-7,8-dihydro-8-oxoadenosine and their incorporation into oligomeric DNA
-
Bodepudi V, Shibutani S, Johnson F (1992) Synthesis of 2′-deoxy-7,8-dihydro-8-oxoguanosine and 2′ -deoxy-7,8-dihydro-8-oxoadenosine and their incorporation into oligomeric DNA. Chem Res Toxicol 5: 608-617
-
(1992)
Chem Res Toxicol
, vol.5
, pp. 608-617
-
-
Bodepudi, V.1
Shibutani, S.2
Johnson, F.3
-
2
-
-
0023665197
-
DNA polymerase insertion fidelity. Gel assay for site-specific kinetics
-
Boosalis MS, Petruska J, Goodman MF (1987) DNA polymerase insertion fidelity. Gel assay for site-specific kinetics. J Biol Chem 262: 14689-14696
-
(1987)
J Biol Chem
, vol.262
, pp. 14689-14696
-
-
Boosalis, M.S.1
Petruska, J.2
Goodman, M.F.3
-
3
-
-
0034714010
-
1 Ang crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium
-
Chiu TK, Dickerson RE (2000) 1 Ang crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium. J Mol Biol 301: 915-945
-
(2000)
J Mol Biol
, vol.301
, pp. 915-945
-
-
Chiu, T.K.1
Dickerson, R.E.2
-
4
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project N (1994) The CCP4 suite: programs for protein crystallography. Acta Crystallogr D 50: 760-763
-
(1994)
Acta Crystallogr D
, vol.50
, pp. 760-763
-
-
-
5
-
-
0035369086
-
Structure of the replicating complex of a pol alpha family DNA polymerase
-
Franklin MC, Wang J, Steitz TA (2001) Structure of the replicating complex of a pol alpha family DNA polymerase. Cell 105: 657-667
-
(2001)
Cell
, vol.105
, pp. 657-667
-
-
Franklin, M.C.1
Wang, J.2
Steitz, T.A.3
-
7
-
-
0037013287
-
Yeast Rev 1 protein is a G template-specific DNA polymerase
-
Haracska L, Prakash S, Prakash L (2002) Yeast Rev 1 protein is a G template-specific DNA polymerase. J Biol Chem 277: 15546-15551
-
(2002)
J Biol Chem
, vol.277
, pp. 15546-15551
-
-
Haracska, L.1
Prakash, S.2
Prakash, L.3
-
8
-
-
0035936690
-
Crystal structure of DNA polymerase from hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1
-
Hashimoto H, Nishioka M, Fujiwara S, Takagi M, Imanaka T, Inoue T, Kai Y (2001) Crystal structure of DNA polymerase from hyperthermophilic archaeon Pyrococcus kodakaraensis KOD1. J Mol Biol 306: 469-477
-
(2001)
J Mol Biol
, vol.306
, pp. 469-477
-
-
Hashimoto, H.1
Nishioka, M.2
Fujiwara, S.3
Takagi, M.4
Imanaka, T.5
Inoue, T.6
Kai, Y.7
-
9
-
-
0033616725
-
Crystal structure of a thermostable type B DNA polymerase from Thermococcus gorgonarius
-
Hopfner KP, Eichinger A, Engh RA, Laue F, Ankenbauer W, Huber R, Angerer B (1999) Crystal structure of a thermostable type B DNA polymerase from Thermococcus gorgonarius. Proc Natl Acad Sci USA 96: 3600-3605
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 3600-3605
-
-
Hopfner, K.P.1
Eichinger, A.2
Engh, R.A.3
Laue, F.4
Ankenbauer, W.5
Huber, R.6
Angerer, B.7
-
10
-
-
84889120137
-
Improved methods for binding protein models in electron density maps and the location of errors in these models
-
Jones TA, Zou JY, Cowan SW, Kjeldgaard M (1991) Improved methods for binding protein models in electron density maps and the location of errors in these models. Acta Crystallogr A 47: 110-119
-
(1991)
Acta Crystallogr A
, vol.47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
11
-
-
0028881713
-
Polymerase structures and function: Variations on a theme?
-
Joyce CM, Steitz TA (1995) Polymerase structures and function: variations on a theme? J Bacteriol 177: 6321-6329
-
(1995)
J Bacteriol
, vol.177
, pp. 6321-6329
-
-
Joyce, C.M.1
Steitz, T.A.2
-
12
-
-
0002906346
-
Around O
-
Rossmann MG, Arnold E (eds), Vol. Chapter 17.1, The Netherlands, Dordrecht: Kluwer Academic Publishers
-
Kleywegt GJ, Zou JY, Kjeldgaard M, Jones TA (2001) Around O. In International Tables for Crystallography, Volume F. Crystallography of Biological Macromolecules, Rossmann MG, Arnold E (eds), Vol. Chapter 17.1, pp 353-356, 366-367 The Netherlands, Dordrecht: Kluwer Academic Publishers
-
(2001)
International Tables for Crystallography, Volume F. Crystallography of Biological Macromolecules
, pp. 353-356
-
-
Kleywegt, G.J.1
Zou, J.Y.2
Kjeldgaard, M.3
Jones, T.A.4
-
13
-
-
0035997351
-
Active site tightness and substrate fit in DNA replication
-
Kool ET (2002) Active site tightness and substrate fit in DNA replication. Annu Rev Biochem 71: 191-219
-
(2002)
Annu Rev Biochem
, vol.71
, pp. 191-219
-
-
Kool, E.T.1
-
14
-
-
0025891866
-
NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG (syn).dA(anti) alignment at lesion site
-
Kouchakdjian M, Bodepudi V, Shibutani S, Eisenberg M, Johnson F, Grollman AP, Patel DJ (1991) NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG (syn).dA(anti) alignment at lesion site. Biochemistry 30: 1403-1412
-
(1991)
Biochemistry
, vol.30
, pp. 1403-1412
-
-
Kouchakdjian, M.1
Bodepudi, V.2
Shibutani, S.3
Eisenberg, M.4
Johnson, F.5
Grollman, A.P.6
Patel, D.J.7
-
15
-
-
0037227566
-
Structure of DNA polymerase beta with the mutagenic DNA lesion 8-oxodeoxyguanine reveals structural insights into its coding potential
-
Krahn JM, Beard WA, Miller H, Grollman AP, Wilson SH (2003) Structure of DNA polymerase beta with the mutagenic DNA lesion 8-oxodeoxyguanine reveals structural insights into its coding potential. Structure 121-127
-
(2003)
Structure
, pp. 121-127
-
-
Krahn, J.M.1
Beard, W.A.2
Miller, H.3
Grollman, A.P.4
Wilson, S.H.5
-
16
-
-
0026244229
-
MOLSCRIPT - A program to produce both detailed and schematic plots of protein structures
-
Kraulis PJ (1991) MOLSCRIPT-a program to produce both detailed and schematic plots of protein structures. J Appl Crystallogr 24: 946-950
-
(1991)
J Appl Crystallogr
, vol.24
, pp. 946-950
-
-
Kraulis, P.J.1
-
17
-
-
0000127585
-
Automated refinement of protein models
-
Lamzin VS, Wilson KS (1993) Automated refinement of protein models. Acta Crystallogr D 49: 129-149
-
(1993)
Acta Crystallogr D
, vol.49
, pp. 129-149
-
-
Lamzin, V.S.1
Wilson, K.S.2
-
19
-
-
0037202616
-
Replication of damaged DNA in mammalian cells: New solutions to an old problem
-
Lehmann AR (2002) Replication of damaged DNA in mammalian cells: new solutions to an old problem. Mutat Res 509: 23-34
-
(2002)
Mutat Res
, vol.509
, pp. 23-34
-
-
Lehmann, A.R.1
-
20
-
-
0018620965
-
DNA glycosylases, endonucleases for apurinic/apyrimidinic sites, and base excision-repair
-
Lindahl T (1979) DNA glycosylases, endonucleases for apurinic/apyrimidinic sites, and base excision-repair. Prog Nucleic Acid Res Mol Biol 22: 135-192
-
(1979)
Prog Nucleic Acid Res Mol Biol
, vol.22
, pp. 135-192
-
-
Lindahl, T.1
-
21
-
-
0028799524
-
X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine
-
Lipscomb LA, Peek ME, Morningstar ML, Verghis SM, Miller EM, Rich A, Essigmann JM, Williams LD (1995) X-ray structure of a DNA decamer containing 7,8-dihydro-8-oxoguanine. Proc Natl Acad Sci USA 92: 719-723
-
(1995)
Proc Natl Acad Sci USA
, vol.92
, pp. 719-723
-
-
Lipscomb, L.A.1
Peek, M.E.2
Morningstar, M.L.3
Verghis, S.M.4
Miller, E.M.5
Rich, A.6
Essigmann, J.M.7
Williams, L.D.8
-
22
-
-
0001446665
-
P1 or P-1? or something else?
-
Marsh RE (1999) P1 or P-1? Or something else? Acta Crystallogr B 55: 931-936
-
(1999)
Acta Crystallogr B
, vol.55
, pp. 931-936
-
-
Marsh, R.E.1
-
23
-
-
0027930608
-
Crystal structure of a DNA duplex containing 8-hydroxydeoxyguanine-adenine base pairs
-
McAuley-Hecht KE, Leonard GA, Gibson NJ, Thomson JB, Watson WP, Hunter WN, Brown T (1994) Crystal structure of a DNA duplex containing 8-hydroxydeoxyguanine-adenine base pairs. Biochemistry 33: 10266-10270
-
(1994)
Biochemistry
, vol.33
, pp. 10266-10270
-
-
McAuley-Hecht, K.E.1
Leonard, G.A.2
Gibson, N.J.3
Thomson, J.B.4
Watson, W.P.5
Hunter, W.N.6
Brown, T.7
-
24
-
-
0028057108
-
Raster3D Version 2.0 - A program for photorealistic molecular graphics
-
Merrit EA, Murphy MEP (1994) Raster3D Version 2.0-a program for photorealistic molecular graphics. Acta Crystallogr D 50: 869-873
-
(1994)
Acta Crystallogr D
, vol.50
, pp. 869-873
-
-
Merrit, E.A.1
Murphy, M.E.P.2
-
25
-
-
0030693128
-
Kinetics of DNA polymerase I (Klenow fragment exo-) activity on damaged DNA templates: Effect of proximal and distal template damage on DNA synthesis
-
Miller H, Grollman AP (1997) Kinetics of DNA polymerase I (Klenow fragment exo-) activity on damaged DNA templates: effect of proximal and distal template damage on DNA synthesis. Biochemistry 36: 15336-15342
-
(1997)
Biochemistry
, vol.36
, pp. 15336-15342
-
-
Miller, H.1
Grollman, A.P.2
-
27
-
-
0030924992
-
Refinement of macromolecular structures by the maximum-likelihood method
-
Murshudov GN, Vagin AA, Dodson EJ (1997) Refinement of macromolecular structures by the maximum-likelihood method. Acta Crystallogr D 53: 240-255
-
(1997)
Acta Crystallogr D
, vol.53
, pp. 240-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Dodson, E.J.3
-
28
-
-
0025854831
-
NMR studies of a DNA containing 8-hydroxydeoxyguanosine
-
Oda Y, Uesugi S, Ikehara M, Nishimura S, Kawase Y, Ishikawa H, Inoue H, Ohtsuka E (1991) NMR studies of a DNA containing 8-hydroxydeoxyguanosine. Nucleic Acids Res 19: 1407-1412
-
(1991)
Nucleic Acids Res
, vol.19
, pp. 1407-1412
-
-
Oda, Y.1
Uesugi, S.2
Ikehara, M.3
Nishimura, S.4
Kawase, Y.5
Ishikawa, H.6
Inoue, H.7
Ohtsuka, E.8
-
29
-
-
0021984004
-
Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP
-
Ollis DL, Brick P, Hamlin R, Xuong NG, Steitz TA (1985) Structure of large fragment of Escherichia coli DNA polymerase I complexed with dTMP. Nature 762-766
-
(1985)
Nature
, pp. 762-766
-
-
Ollis, D.L.1
Brick, P.2
Hamlin, R.3
Xuong, N.G.4
Steitz, T.A.5
-
30
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Carter CWJ, Sweet RM (eds), New York: Academic Press
-
Otwinowski Z, Minor W (1997) Processing of X-ray diffraction data collected in oscillation mode. In Methods Enzymology, Carter CWJ, Sweet RM (eds),Vol. 276, pp 307-326. New York: Academic Press
-
(1997)
Methods Enzymology
, vol.276
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
31
-
-
0034595517
-
Crystal structure of a pol alpha family DNA polymerase from the hyperthermophilic archaeon Thermococcus sp. 9 degrees N-7
-
Rodriguez AC, Park HW, Mao C, Beese LS (2000) Crystal structure of a pol alpha family DNA polymerase from the hyperthermophilic archaeon Thermococcus sp. 9 degrees N-7. J Mol Biol 299: 447-462
-
(2000)
J Mol Biol
, vol.299
, pp. 447-462
-
-
Rodriguez, A.C.1
Park, H.W.2
Mao, C.3
Beese, L.S.4
-
32
-
-
0015384762
-
Crystal and molecular structure of a naturally occurring dinucleoside monophosphate. Uridylyl-(3′-5′)-adenosine hemihydrate. Conformational 'rigidity' of the nucleotide unit and models for polynucleotide chain folding
-
Rubin J, Brennan T, Sundaralingam M (1972) Crystal and molecular structure of a naturally occurring dinucleoside monophosphate. Uridylyl-(3′-5′)-adenosine hemihydrate. Conformational 'rigidity' of the nucleotide unit and models for polynucleotide chain folding. Biochemistry 11: 3112-3128
-
(1972)
Biochemistry
, vol.11
, pp. 3112-3128
-
-
Rubin, J.1
Brennan, T.2
Sundaralingam, M.3
-
33
-
-
0032692565
-
Building a replisome from interacting pieces: Sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex
-
Shamoo Y, Steitz TA (1999) Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex. Cell 99: 155-166
-
(1999)
Cell
, vol.99
, pp. 155-166
-
-
Shamoo, Y.1
Steitz, T.A.2
-
34
-
-
0001422908
-
Crystal and molecular structure of D(+)-barium uridine-5′-phosphate
-
Shefter E, Trueblood KN (1965) Crystal and molecular structure of D(+)-barium uridine-5′-phosphate. Acta Crystallogr 1067-1077
-
(1965)
Acta Crystallogr
, pp. 1067-1077
-
-
Shefter, E.1
Trueblood, K.N.2
-
35
-
-
0027160522
-
Translesional synthesis on DNA templates containing 8-oxo-7,8-dihydrodeoxyadenosine (8-oxodA)
-
Shibutani S, Bodepudi V, Johnson F, Grollman AP (1993) Translesional synthesis on DNA templates containing 8-oxo-7,8-dihydrodeoxyadenosine (8-oxodA). Biochemistry 32: 4615-4621
-
(1993)
Biochemistry
, vol.32
, pp. 4615-4621
-
-
Shibutani, S.1
Bodepudi, V.2
Johnson, F.3
Grollman, A.P.4
-
36
-
-
0025981359
-
Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG
-
Shibutani S, Takeshita M, Grollman AP (1991) Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG. Nature 349: 431-434
-
(1991)
Nature
, vol.349
, pp. 431-434
-
-
Shibutani, S.1
Takeshita, M.2
Grollman, A.P.3
-
37
-
-
0030971099
-
Translesional synthesis on DNA templates containing a single abasic site. A mechanistic study of the 'A rule'
-
Shibutani S, Takeshita M, Grollman AP (1997) Translesional synthesis on DNA templates containing a single abasic site. A mechanistic study of the 'A rule'. J Biol Chem 23: 13916-13922
-
(1997)
J Biol Chem
, vol.23
, pp. 13916-13922
-
-
Shibutani, S.1
Takeshita, M.2
Grollman, A.P.3
-
38
-
-
0027411261
-
DNA- and RNA-dependent DNA polymerases
-
Steitz TA (1993) DNA- and RNA-dependent DNA polymerases. Curr Opin Struct Biol 3: 31-38
-
(1993)
Curr Opin Struct Biol
, vol.3
, pp. 31-38
-
-
Steitz, T.A.1
-
39
-
-
0015527022
-
Crystal structure of a naturally occurring dinucleoside phosphate: Uridylyl 3′,5′-adenosine phosphate model for RNA chain folding
-
Sussman JL, Seeman NC, Kim S-H, Berman HM (1972) Crystal structure of a naturally occurring dinucleoside phosphate: uridylyl 3′, 5′-adenosine phosphate model for RNA chain folding. J Mol Biol 66: 403-421
-
(1972)
J Mol Biol
, vol.66
, pp. 403-421
-
-
Sussman, J.L.1
Seeman, N.C.2
Kim, S.-H.3
Berman, H.M.4
-
40
-
-
0023664684
-
Oligodeoxynucleotides containing synthetic abasic sites. Model substrates for DNA polymerases and apurinic/apyrimidinic endonucleases
-
Takeshita M, Chang CN, Johnson F, Will S, Grollman AP (1987) Oligodeoxynucleotides containing synthetic abasic sites. Model substrates for DNA polymerases and apurinic/apyrimidinic endonucleases. J Biol Chem 262: 10171-10179
-
(1987)
J Biol Chem
, vol.262
, pp. 10171-10179
-
-
Takeshita, M.1
Chang, C.N.2
Johnson, F.3
Will, S.4
Grollman, A.P.5
-
41
-
-
0028292587
-
Mechanism of mutation on DNA templates containing synthetic abasic sites: Study with a double strand vector
-
Takeshita M, Eisenberg W (1994) Mechanism of mutation on DNA templates containing synthetic abasic sites: study with a double strand vector. Nucleic Acids Res 22: 1897-1902
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 1897-1902
-
-
Takeshita, M.1
Eisenberg, W.2
-
42
-
-
0000560808
-
MOLREP: An automated program for molecular replacement
-
Vagin A, Teplyakov A (1997) MOLREP: an automated program for molecular replacement. J Appl Crystallogr 30: 1022-1025
-
(1997)
J Appl Crystallogr
, vol.30
, pp. 1022-1025
-
-
Vagin, A.1
Teplyakov, A.2
-
43
-
-
0028819728
-
Modular organisation of T4 DNA polymerase
-
Wang CC, Yeh LS, Karam JD (1995) Modular organisation of T4 DNA polymerase. J Biol Chem 270: 26558-26564
-
(1995)
J Biol Chem
, vol.270
, pp. 26558-26564
-
-
Wang, C.C.1
Yeh, L.S.2
Karam, J.D.3
-
44
-
-
0031587827
-
Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69
-
Wang J, Sattar AK, Wang CC, Karam JD, Konigsberg WH, Steitz TA (1997) Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69. Cell 89: 1087-1099
-
(1997)
Cell
, vol.89
, pp. 1087-1099
-
-
Wang, J.1
Sattar, A.K.2
Wang, C.C.3
Karam, J.D.4
Konigsberg, W.H.5
Steitz, T.A.6
-
45
-
-
0033594982
-
Steady-state kinetic characterization of RB69 DNA polymerase mutants that affect dNTP incorporation
-
Yang G, Lin T-C, Karam J, Konigsberg WH (1999) Steady-state kinetic characterization of RB69 DNA polymerase mutants that affect dNTP incorporation. Biochemistry 38: 8094-8101
-
(1999)
Biochemistry
, vol.38
, pp. 8094-8101
-
-
Yang, G.1
Lin, T.-C.2
Karam, J.3
Konigsberg, W.H.4
-
46
-
-
0034556629
-
Error-prone lesion bypass by human DNA polymerase eta
-
Zhang Y, Yuan F, Wu X, Rechkoblit O, Taylor JS, Geacintov NE, Wang Z (2000) Error-prone lesion bypass by human DNA polymerase eta. Nucleic Acids Res 28: 4717-4724
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4717-4724
-
-
Zhang, Y.1
Yuan, F.2
Wu, X.3
Rechkoblit, O.4
Taylor, J.S.5
Geacintov, N.E.6
Wang, Z.7
-
47
-
-
0033570179
-
Crystal structure of an archaebacterial DNA polymerase
-
Zhao Y, Jeruzalmi D, Moarefi I, Leighton L, Lasken R, Kuriyan J (1999) Crystal structure of an archaebacterial DNA polymerase. Struct Fold Des 7: 1189-1199
-
(1999)
Struct Fold Des
, vol.7
, pp. 1189-1199
-
-
Zhao, Y.1
Jeruzalmi, D.2
Moarefi, I.3
Leighton, L.4
Lasken, R.5
Kuriyan, J.6
|