-
1
-
-
0002734742
-
A comparative approach to study the evolution of microsatellites
-
Goldstein DB, Schlötterer C, editors, Oxford: Oxford University Press, p. 352
-
Amos W. 1999. A comparative approach to study the evolution of microsatellites. In: Goldstein DB, Schlötterer C, editors. Microsatellites: evolution and applications. Oxford: Oxford University Press. pp. xv. p. 352.
-
(1999)
Microsatellites: Evolution and Applications
-
-
Amos, W.1
-
3
-
-
63149132950
-
DNA models of trinucleotide frameshift deletions: The formation of loops and bulges at the primer-template junction
-
Baase WA, Jose D, Ponedel BC, von Hippel PH, Johnson NP. 2009. DNA models of trinucleotide frameshift deletions: the formation of loops and bulges at the primer-template junction. Nucleic Acids Res. 37:1682-1689.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1682-1689
-
-
Baase, W.A.1
Jose, D.2
Ponedel, B.C.3
Von Hippel, P.H.4
Johnson, N.P.5
-
4
-
-
0033639086
-
Sequence analysis by additive scales: DNA structure for sequences and repeats of all lengths
-
Baldi P, Baisnee PF. 2000. Sequence analysis by additive scales: DNA structure for sequences and repeats of all lengths. Bioinformatics. 16:865-889.
-
(2000)
Bioinformatics
, vol.16
, pp. 865-889
-
-
Baldi, P.1
Baisnee, P.F.2
-
5
-
-
0025309892
-
Frameshift errors initiated by nucleotide misincorporation
-
Bebenek K, Kunkel TA. 1990. Frameshift errors initiated by nucleotide misincorporation. Proc Natl Acad Sci U S A. 87:4946-4950.
-
(1990)
Proc. Natl. Acad. Sci. U. S. A.
, vol.87
, pp. 4946-4950
-
-
Bebenek, K.1
Kunkel, T.A.2
-
6
-
-
56449125247
-
The relationship between microsatellite polymorphism and recombination hot spots in the human genome
-
Brandstrom M, Bagshaw AT, Gemmell NJ, Ellegren H. 2008. The relationship between microsatellite polymorphism and recombination hot spots in the human genome. Mol Biol Evol. 25:2579-2587.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 2579-2587
-
-
Brandstrom, M.1
Bagshaw, A.T.2
Gemmell, N.J.3
Ellegren, H.4
-
7
-
-
44849095421
-
Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias
-
Brandstrom M, Ellegren H. 2008. Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias. Genome Res. 18:881-887.
-
(2008)
Genome Res.
, vol.18
, pp. 881-887
-
-
Brandstrom, M.1
Ellegren, H.2
-
8
-
-
0031778070
-
Mutation rate in human microsatellites: Influence of the structure and length of the tandem repeat
-
Brinkmann B, Klintschar M, Neuhuber F, Huhne J, Rolf B. 1998. Mutation rate in human microsatellites: influence of the structure and length of the tandem repeat. Am J Hum Genet. 62:1408-1415.
-
(1998)
Am. J. Hum. Genet.
, vol.62
, pp. 1408-1415
-
-
Brinkmann, B.1
Klintschar, M.2
Neuhuber, F.3
Huhne, J.4
Rolf, B.5
-
10
-
-
11144357461
-
Allelic length of a CA dinucleotide repeat in the egfr gene correlates with the frequency of amplifications of this sequence-first results of an inter-ethnic breast cancer study
-
Buerger H, et al. 2004. Allelic length of a CA dinucleotide repeat in the egfr gene correlates with the frequency of amplifications of this sequence-first results of an inter-ethnic breast cancer study. J Pathol. 203:545-550.
-
(2004)
J. Pathol.
, vol.203
, pp. 545-550
-
-
Buerger, H.1
-
11
-
-
0022472187
-
Neighboring base effects on substitution rates in pseudogenes
-
Bulmer M. 1986. Neighboring base effects on substitution rates in pseudogenes. Mol Biol Evol. 3:322-329.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 322-329
-
-
Bulmer, M.1
-
12
-
-
33749991391
-
The rise, fall and renaissance of microsatellites in eukaryotic genomes
-
Buschiazzo E, Gemmell NJ. 2006. The rise, fall and renaissance of microsatellites in eukaryotic genomes. Bioessays. 28:1040-1050.
-
(2006)
Bioessays
, vol.28
, pp. 1040-1050
-
-
Buschiazzo, E.1
Gemmell, N.J.2
-
13
-
-
34248170222
-
PolyScan: An automatic indel and SNP detection approach to the analysis of human resequencing data
-
Chen K, et al. 2007. PolyScan: an automatic indel and SNP detection approach to the analysis of human resequencing data. Genome Res. 17:659-666.
-
(2007)
Genome Res.
, vol.17
, pp. 659-666
-
-
Chen, K.1
-
14
-
-
0027502580
-
Genetic basis of variable exon 9 skipping in cystic fibrosis transmembrane conductance regulator mRNA
-
Chu CS, Trapnell BC, Curristin S, Cutting GR, Crystal RG. 1993. Genetic basis of variable exon 9 skipping in cystic fibrosis transmembrane conductance regulator mRNA. Nat Genet. 3:151-156.
-
(1993)
Nat. Genet.
, vol.3
, pp. 151-156
-
-
Chu, C.S.1
Trapnell, B.C.2
Curristin, S.3
Cutting, G.R.4
Crystal, R.G.5
-
15
-
-
0031008401
-
Characteristic enrichment of DNA repeats in different genomes
-
Cox R, Mirkin SM. 1997. Characteristic enrichment of DNA repeats in different genomes. Proc Natl Acad Sci U S A. 94:5237-5242.
-
(1997)
Proc. Natl. Acad. Sci. U. S. A.
, vol.94
, pp. 5237-5242
-
-
Cox, R.1
Mirkin, S.M.2
-
17
-
-
0032518518
-
Polyvariant mutant cystic fibrosis transmembrane conductance regulator genes. The polymorphic (Tg) m locus explains the partial penetrance of the T5 polymorphism as a disease mutation
-
Cuppens H, et al. 1998. Polyvariant mutant cystic fibrosis transmembrane conductance regulator genes. The polymorphic (Tg) m locus explains the partial penetrance of the T5 polymorphism as a disease mutation. J Clin Invest. 101:487-496.
-
(1998)
J. Clin. Invest.
, vol.101
, pp. 487-496
-
-
Cuppens, H.1
-
18
-
-
0034613187
-
Dinucleotide repeat expansion catalyzed by bacteriophage T4 DNA polymerase in vitro
-
da Silva EF, Reha-Krantz LJ. 2000. Dinucleotide repeat expansion catalyzed by bacteriophage T4 DNA polymerase in vitro. J Biol Chem. 275:31528-31535.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 31528-31535
-
-
Da Silva, E.F.1
Reha-Krantz, L.J.2
-
20
-
-
1942499339
-
Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans
-
Denver DR, Morris K, Kewalramani A, Harris KE, Chow A, Estes S, Lynch M, Thomas WK. 2004. Abundance, distribution, and mutation rates of homopolymeric nucleotide runs in the genome of Caenorhabditis elegans. J Mol Evol. 58:584-595.
-
(2004)
J. Mol. Evol.
, vol.58
, pp. 584-595
-
-
Denver, D.R.1
Morris, K.2
Kewalramani, A.3
Harris, K.E.4
Chow, A.5
Estes, S.6
Lynch, M.7
Thomas, W.K.8
-
21
-
-
0019859791
-
The number of repeats expected in random nucleic acid sequences and found in genes
-
de Wachter R. 1981. The number of repeats expected in random nucleic acid sequences and found in genes. J Theor Biol. 91:71-98.
-
(1981)
J. Theor. Biol.
, vol.91
, pp. 71-98
-
-
De Wachter, R.1
-
22
-
-
10744226741
-
Two distinct modes of microsatellite mutation processes: Evidence from the complete genomic sequences of nine species
-
Dieringer D, Schlötterer C. 2003. Two distinct modes of microsatellite mutation processes: evidence from the complete genomic sequences of nine species. Genome Res. 13:2242-2251.
-
(2003)
Genome Res.
, vol.13
, pp. 2242-2251
-
-
Dieringer, D.1
Schlötterer, C.2
-
23
-
-
65249153186
-
Every microsatellite is different: Intrinsic DNA features dictate mutagenesis of common microsatellites present in the human genome
-
Eckert KA, Hile SE. 2009. Every microsatellite is different: intrinsic DNA features dictate mutagenesis of common microsatellites present in the human genome. Mol Carcinog. 48:379-388.
-
(2009)
Mol. Carcinog
, vol.48
, pp. 379-388
-
-
Eckert, K.A.1
Hile, S.E.2
-
24
-
-
0030738503
-
Development and use of an in vitro HSV-tk forward mutation assay to study eukaryotic DNA polymerase processing of DNA alkyl lesions
-
Eckert KA, Hile SE, Vargo PL. 1997. Development and use of an in vitro HSV-tk forward mutation assay to study eukaryotic DNA polymerase processing of DNA alkyl lesions. Nucleic Acids Res. 25:1450-1457.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 1450-1457
-
-
Eckert, K.A.1
Hile, S.E.2
Vargo, P.L.3
-
25
-
-
0037143581
-
Misalignment-mediated DNA polymerase beta mutations: Comparison of microsatellite and frameshift error rates using a forward mutation assay
-
Eckert KA, Mowery A, Hile SE. 2002. Misalignment-mediated DNA polymerase beta mutations: comparison of microsatellite and frameshift error rates using a forward mutation assay. Biochemistry. 41:10490-10498.
-
(2002)
Biochemistry
, vol.41
, pp. 10490-10498
-
-
Eckert, K.A.1
Mowery, A.2
Hile, S.E.3
-
26
-
-
0034661615
-
Mutational analyses of dinucleotide and tetranucleotide microsatellites in Escherichia coli: Influence of sequence on expansion mutagenesis
-
Eckert KA, Yan G. 2000. Mutational analyses of dinucleotide and tetranucleotide microsatellites in Escherichia coli: influence of sequence on expansion mutagenesis. Nucleic Acids Res. 28:2831-2838.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 2831-2838
-
-
Eckert, K.A.1
Yan, G.2
-
27
-
-
0036301994
-
Mutation rate and specificity analysis of tetranucleotide microsatellite DNA alleles in somatic human cells
-
Eckert KA, Yan G, Hile SE. 2002. Mutation rate and specificity analysis of tetranucleotide microsatellite DNA alleles in somatic human cells. Mol Carcinog. 34:140-150.
-
(2002)
Mol. Carcinog
, vol.34
, pp. 140-150
-
-
Eckert, K.A.1
Yan, G.2
Hile, S.E.3
-
28
-
-
0034564097
-
Microsatellite mutations in the germline: Implications for evolutionary inference
-
Ellegren H. 2000. Microsatellite mutations in the germline: implications for evolutionary inference. Trends Genet. 16:551-558.
-
(2000)
Trends Genet.
, vol.16
, pp. 551-558
-
-
Ellegren, H.1
-
29
-
-
3042782819
-
Microsatellites: Simple sequences with complex evolution
-
Ellegren H. 2004. Microsatellites: simple sequences with complex evolution. Nat Rev Genet. 5:435-445.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 435-445
-
-
Ellegren, H.1
-
30
-
-
0032539711
-
Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces
-
Field D, Wills C. 1998. Abundant microsatellite polymorphism in Saccharomyces cerevisiae, and the different distributions of microsatellites in eight prokaryotes and S. cerevisiae, result from strong mutation pressures and a variety of selective forces. Proc Natl Acad Sci U S A. 95:1647-1652.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 1647-1652
-
-
Field, D.1
Wills, C.2
-
31
-
-
33646490558
-
Mechanism of a genetic glissando: Structural biology of indel mutations
-
Garcia-Diaz M, Kunkel TA. 2006. Mechanism of a genetic glissando: structural biology of indel mutations. Trends Biochem Sci. 31:206-214.
-
(2006)
Trends Biochem. Sci.
, vol.31
, pp. 206-214
-
-
Garcia-Diaz, M.1
Kunkel, T.A.2
-
32
-
-
0040886242
-
Modulation of epidermal growth factor receptor gene transcription by a polymorphic dinucleotide repeat in intron 1
-
Gebhardt F, Zanker KS, Brandt B. 1999. Modulation of epidermal growth factor receptor gene transcription by a polymorphic dinucleotide repeat in intron 1. J Biol Chem. 274:13176-13180.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 13176-13180
-
-
Gebhardt, F.1
Zanker, K.S.2
Brandt, B.3
-
33
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon D, Abajian C, Green P. 1998. Consed: a graphical tool for sequence finishing. Genome Res. 8:195-202.
-
(1998)
Genome Res.
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
34
-
-
0036893213
-
Base composition of mononucleotide runs affects DNA polymerase slippage and removal of frameshift intermediates by mismatch repair in Saccharomyces cerevisiae
-
Gragg H, Harfe BD, Jinks-Robertson S. 2002. Base composition of mononucleotide runs affects DNA polymerase slippage and removal of frameshift intermediates by mismatch repair in Saccharomyces cerevisiae. Mol Cell Biol. 22:8756-8762.
-
(2002)
Mol. Cell. Biol.
, vol.22
, pp. 8756-8762
-
-
Gragg, H.1
Harfe, B.D.2
Jinks-Robertson, S.3
-
35
-
-
20644472668
-
Microsatellite instability generates diversity in brain and sociobehavioral traits
-
Hammock EA, Young LJ. 2005. Microsatellite instability generates diversity in brain and sociobehavioral traits. Science. 308:1630-1634.
-
(2005)
Science
, vol.308
, pp. 1630-1634
-
-
Hammock, E.A.1
Young, L.J.2
-
36
-
-
18544404720
-
Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution
-
Hardison RC, et al. 2003. Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution. Genome Res. 13:13-26.
-
(2003)
Genome Res.
, vol.13
, pp. 13-26
-
-
Hardison, R.C.1
-
38
-
-
1542606527
-
Positive correlation between DNA polymerase alpha-primase pausing and mutagenesis within polypyrimidine/polypurine microsatellite sequences
-
Hile SE, Eckert KA. 2004. Positive correlation between DNA polymerase alpha-primase pausing and mutagenesis within polypyrimidine/polypurine microsatellite sequences. J Mol Biol. 335:745-759.
-
(2004)
J. Mol. Biol.
, vol.335
, pp. 745-759
-
-
Hile, S.E.1
Eckert, K.A.2
-
39
-
-
39149094942
-
DNA polymerase kappa produces interrupted mutations and displays polar pausing within mononucleotide microsatellite sequences
-
Hile SE, Eckert KA. 2008. DNA polymerase kappa produces interrupted mutations and displays polar pausing within mononucleotide microsatellite sequences. Nucleic Acids Res. 36:688-696.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 688-696
-
-
Hile, S.E.1
Eckert, K.A.2
-
40
-
-
0034654142
-
Somatic mutation rates and specificities at TC/AG and GT/CA microsatellite sequences in nontumorigenic human lymphoblastoid cells
-
Hile SE, Yan G, Eckert KA. 2000. Somatic mutation rates and specificities at TC/AG and GT/CA microsatellite sequences in nontumorigenic human lymphoblastoid cells. Cancer Res. 60:1698-1703.
-
(2000)
Cancer Res.
, vol.60
, pp. 1698-1703
-
-
Hile, S.E.1
Yan, G.2
Eckert, K.A.3
-
41
-
-
0036183651
-
Mutation patterns at dinucleotide microsatellite loci in humans
-
Huang QY, et al. 2002. Mutation patterns at dinucleotide microsatellite loci in humans. Am J Hum Genet. 70:625-634.
-
(2002)
Am. J. Hum. Genet.
, vol.70
, pp. 625-634
-
-
Huang, Q.Y.1
-
42
-
-
21244469877
-
Intronic CA-repeat and CA-rich elements: A new class of regulators of mammalian alternative splicing
-
Hui J, et al. 2005. Intronic CA-repeat and CA-rich elements: a new class of regulators of mammalian alternative splicing. EMBO J. 24:1988-1998.
-
(2005)
EMBO J.
, vol.24
, pp. 1988-1998
-
-
Hui, J.1
-
43
-
-
5044234452
-
Some microsatellites may act as novel polymorphic cis-regulatory elements through transcription factor binding
-
Iglesias AR, Kindlund E, Tammi M, Wadelius C. 2004. Some microsatellites may act as novel polymorphic cis-regulatory elements through transcription factor binding. Gene. 341:149-165.
-
(2004)
Gene
, vol.341
, pp. 149-165
-
-
Iglesias, A.R.1
Kindlund, E.2
Tammi, M.3
Wadelius, C.4
-
44
-
-
79959503826
-
The international hap map project
-
International HapMap Consortium
-
International HapMap Consortium. 2003. The International HapMap Project. Nature. 426:789-796.
-
(2003)
Nature
, vol.426
, pp. 789-796
-
-
-
45
-
-
79959524146
-
A haplotype map of the human genome
-
International HapMap Consortium
-
International HapMap Consortium. 2005. A haplotype map of the human genome. Nature. 437:1299-1320.
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
46
-
-
38049048656
-
The genome-wide determinants of human and chimpanzee microsatellite evolution
-
Kelkar YD, Tyekucheva S, Chiaromonte F, Makova KD. 2008. The genome-wide determinants of human and chimpanzee microsatellite evolution. Genome Res. 18:30-38.
-
(2008)
Genome Res.
, vol.18
, pp. 30-38
-
-
Kelkar, Y.D.1
Tyekucheva, S.2
Chiaromonte, F.3
Makova, K.D.4
-
47
-
-
0029871364
-
Analysis of left-handed Z-DNA formation in short d (CG) n sequences in Escherichia coli and Halobacterium halobium plasmids. Stabilization by increasing repeat length and DNA supercoiling but not salinity
-
Kim J, Yang C, DasSarma S. 1996. Analysis of left-handed Z-DNA formation in short d (CG) n sequences in Escherichia coli and Halobacterium halobium plasmids. Stabilization by increasing repeat length and DNA supercoiling but not salinity. J Biol Chem. 271:9340-9346.
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 9340-9346
-
-
Kim, J.1
Yang, C.2
DasSarma, S.3
-
48
-
-
0030025084
-
Exonucleolytic proofreading during replication of repetitive DNA
-
Kroutil LC, Register K, Bebenek K, Kunkel TA. 1996. Exonucleolytic proofreading during replication of repetitive DNA. Biochemistry. 35:1046-1053.
-
(1996)
Biochemistry
, vol.35
, pp. 1046-1053
-
-
Kroutil, L.C.1
Register, K.2
Bebenek, K.3
Kunkel, T.A.4
-
49
-
-
0025109103
-
Misalignment-mediated DNA synthesis errors
-
Kunkel TA. 1990. Misalignment-mediated DNA synthesis errors. Biochemistry. 29:8003-8011.
-
(1990)
Biochemistry
, vol.29
, pp. 8003-8011
-
-
Kunkel, T.A.1
-
50
-
-
0022577219
-
The base substitution fidelity of eucaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation
-
Kunkel TA, Alexander PS. 1986. The base substitution fidelity of eucaryotic DNA polymerases. Mispairing frequencies, site preferences, insertion preferences, and base substitution by dislocation. J Biol Chem. 261:160-166.
-
(1986)
J. Biol. Chem.
, vol.261
, pp. 160-166
-
-
Kunkel, T.A.1
Alexander, P.S.2
-
52
-
-
0347356456
-
The relationship between microsatellite slippage mutation rate and the number of repeat units
-
Lai Y, Sun F. 2003. The relationship between microsatellite slippage mutation rate and the number of repeat units. Mol Biol Evol. 20:2123-2131.
-
(2003)
Mol. Biol. Evol.
, vol.20
, pp. 2123-2131
-
-
Lai, Y.1
Sun, F.2
-
53
-
-
16944365288
-
Familial colorectal cancer in Ashkenazim due to a hypermutable tract in APC
-
Laken SJ, et al. 1997. Familial colorectal cancer in Ashkenazim due to a hypermutable tract in APC. Nat Genet. 17:79-83.
-
(1997)
Nat. Genet.
, vol.17
, pp. 79-83
-
-
Laken, S.J.1
-
54
-
-
34249009076
-
Detecting microsatellites within genomes: Significant variation among algorithms
-
Leclercq S, Rivals E, Jarne P. 2007. Detecting microsatellites within genomes: significant variation among algorithms. BMC Bioinformatics. 8:125.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 125
-
-
Leclercq, S.1
Rivals, E.2
Jarne, P.3
-
55
-
-
38849170546
-
Sequence-based estimation of minisatellite and microsatellite repeat variability
-
Legendre M, Pochet N, Pak T, Verstrepen KJ. 2007. Sequence-based estimation of minisatellite and microsatellite repeat variability. Genome Res. 17:1787-1796.
-
(2007)
Genome Res.
, vol.17
, pp. 1787-1796
-
-
Legendre, M.1
Pochet, N.2
Pak, T.3
Verstrepen, K.J.4
-
56
-
-
0023256559
-
Slipped-strand mispairing: A major mechanism for DNA sequence evolution
-
Levinson G, Gutman GA. 1987. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol Biol Evol. 4:203-221.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 203-221
-
-
Levinson, G.1
Gutman, G.A.2
-
57
-
-
0036897944
-
Microsatellites: Genomic distribution, putative functions and mutational mechanisms: A review
-
Li YC, Korol AB, Fahima T, Beiles A, Nevo E. 2002. Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review. Mol Ecol. 11:2453-2465.
-
(2002)
Mol. Ecol.
, vol.11
, pp. 2453-2465
-
-
Li, Y.C.1
Korol, A.B.2
Fahima, T.3
Beiles, A.4
Nevo, E.5
-
58
-
-
2442701496
-
Microsatellites within genes: Structure, function, and evolution
-
Li YC, Korol AB, Fahima T, Nevo E. 2004. Microsatellites within genes: structure, function, and evolution. Mol Biol Evol. 21:991-1007.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 991-1007
-
-
Li, Y.C.1
Korol, A.B.2
Fahima, T.3
Nevo, E.4
-
59
-
-
14844345314
-
Microsatellite instability regulates transcription factor binding and gene expression
-
Martin P, Makepeace K, Hill SA, Hood DW, Moxon ER. 2005. Microsatellite instability regulates transcription factor binding and gene expression. Proc Natl Acad Sci U S A. 102:3800-3804.
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 3800-3804
-
-
Martin, P.1
Makepeace, K.2
Hill, S.A.3
Hood, D.W.4
Moxon, E.R.5
-
60
-
-
0031886282
-
A tetranucleotide polymorphic microsatellite, located in the first intron of the tyrosine hydroxylase gene, acts as a transcription regulatory element in vitro
-
Meloni R, Albanese V, Ravassard P, Treilhou F, Mallet J. 1998. A tetranucleotide polymorphic microsatellite, located in the first intron of the tyrosine hydroxylase gene, acts as a transcription regulatory element in vitro. Hum Mol Genet. 7:423-428.
-
(1998)
Hum. Mol. Genet.
, vol.7
, pp. 423-428
-
-
Meloni, R.1
Albanese, V.2
Ravassard, P.3
Treilhou, F.4
Mallet, J.5
-
61
-
-
41049084843
-
Detecting microsatellites in genome data: Variance in definitions and bioinformatic approaches causes systematic bias
-
Merkel A, Gemmell NJ. 2008. Detecting microsatellites in genome data: variance in definitions and bioinformatic approaches causes systematic bias. Evol Bioinform Online. 4:1-6.
-
(2008)
Evol. Bioinform Online
, vol.4
, pp. 1-6
-
-
Merkel, A.1
Gemmell, N.J.2
-
63
-
-
70350125551
-
Triplet repeat length bias and variation in the human transcriptome
-
Molla M, Delcher A, Sunyaev S, Cantor C, Kasif S. 2009. Triplet repeat length bias and variation in the human transcriptome. Proc Natl Acad Sci U S A. 106:17095-17100.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 17095-17100
-
-
Molla, M.1
Delcher, A.2
Sunyaev, S.3
Cantor, C.4
Kasif, S.5
-
64
-
-
34447313409
-
IMEx: Imperfect microsatellite extractor
-
Mudunuri SB, Nagarajaram HA. 2007. IMEx: Imperfect Microsatellite Extractor. Bioinformatics. 23:1181-1187.
-
(2007)
Bioinformatics
, vol.23
, pp. 1181-1187
-
-
Mudunuri, S.B.1
Nagarajaram, H.A.2
-
66
-
-
0036893298
-
A DNA sequence evolution analysis generalized by simulation and the Markov chain Monte Carlo method implicates strand slippage in a majority of insertions and deletions
-
Nishizawa M, Nishizawa K. 2002. A DNA sequence evolution analysis generalized by simulation and the Markov chain Monte Carlo method implicates strand slippage in a majority of insertions and deletions. J Mol Evol. 55:706-717.
-
(2002)
J. Mol. Evol.
, vol.55
, pp. 706-717
-
-
Nishizawa, M.1
Nishizawa, K.2
-
67
-
-
0035062560
-
Evolutionary history of microsatellites in the obscura group of Drosophila
-
Noor MA, Kliman RM, Machado CA. 2001. Evolutionary history of microsatellites in the obscura group of Drosophila. Mol Biol Evol. 18:551-556.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 551-556
-
-
Noor, M.A.1
Kliman, R.M.2
Machado, C.A.3
-
68
-
-
0034687093
-
Hydrophobic interactions in the hinge domain of DNA polymerase beta are important but not sufficient for maintaining fidelity of DNA synthesis
-
Opresko PL, Shiman R, Eckert KA. 2000. Hydrophobic interactions in the hinge domain of DNA polymerase beta are important but not sufficient for maintaining fidelity of DNA synthesis. Biochemistry. 39:11399-11407.
-
(2000)
Biochemistry
, vol.39
, pp. 11399-11407
-
-
Opresko, P.L.1
Shiman, R.2
Eckert, K.A.3
-
70
-
-
13744261340
-
Survey and analysis of microsatellites in the silkworm, Bombyx mori: Frequency, distribution, mutations, marker potential and their conservation in heterologous species
-
Prasad MD, et al. 2005. Survey and analysis of microsatellites in the silkworm, Bombyx mori: frequency, distribution, mutations, marker potential and their conservation in heterologous species. Genetics. 169:197-214.
-
(2005)
Genetics
, vol.169
, pp. 197-214
-
-
Prasad, M.D.1
-
71
-
-
0032969077
-
Evolution of microsatellites in the yeast Saccharomyces cerevisiae: Role of length and number of repeated units
-
Pupko T, Graur D. 1999. Evolution of microsatellites in the yeast Saccharomyces cerevisiae: role of length and number of repeated units. J Mol Evol. 48:313-316.
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 313-316
-
-
Pupko, T.1
Graur, D.2
-
72
-
-
0032553313
-
Human DNA polymerase beta recognizes single-stranded DNA using two different binding modes
-
Rajendran S, Jezewska MJ, Bujalowski W. 1998. Human DNA polymerase beta recognizes single-stranded DNA using two different binding modes. J Biol Chem. 273:31021-31031.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 31021-31031
-
-
Rajendran, S.1
Jezewska, M.J.2
Bujalowski, W.3
-
73
-
-
75549089967
-
The UCSC genome browser database: Update 2010
-
Rhead B, et al. 2010. The UCSC Genome Browser database: update 2010. Nucleic Acids Res. 38: D613-D619.
-
(2010)
Nucleic Acids Res.
, vol.38
-
-
Rhead, B.1
-
75
-
-
0036855185
-
Abundant raw material for cis-regulatory evolution in humans
-
Rockman MV, Wray GA. 2002. Abundant raw material for cis-regulatory evolution in humans. Mol Biol Evol. 19:1991-2004.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1991-2004
-
-
Rockman, M.V.1
Wray, G.A.2
-
76
-
-
0032063424
-
A threshold size for microsatellite expansion
-
Rose O, Falush D. 1998. A threshold size for microsatellite expansion. Mol Biol Evol. 15:613-615.
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 613-615
-
-
Rose, O.1
Falush, D.2
-
77
-
-
0026769448
-
Compartive NMR study of An-bulge loops in DNA duplexes: Intrahelical stacking of A, A-A, and A-A-A bulge loops
-
Rosen MA, Live D, Patel DJ. 1992. Compartive NMR study of An-bulge loops in DNA duplexes: intrahelical stacking of A, A-A, and A-A-A bulge loops. Biochemistry. 31:4004-4014.
-
(1992)
Biochemistry
, vol.31
, pp. 4004-4014
-
-
Rosen, M.A.1
Live, D.2
Patel, D.J.3
-
78
-
-
0344237377
-
Deletion in a (T) 8 microsatellite abrogates expression regulation by 3′-UTR
-
Ruggiero T, et al. 2003. Deletion in a (T) 8 microsatellite abrogates expression regulation by 3′-UTR. Nucleic Acids Res. 31:6561-6569.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 6561-6569
-
-
Ruggiero, T.1
-
79
-
-
0026542473
-
Slippage synthesis of simple sequence DNA
-
Schlötterer C, Tautz D. 1992. Slippage synthesis of simple sequence DNA. Nucleic Acids Res. 20:211-215.
-
(1992)
Nucleic Acids Res.
, vol.20
, pp. 211-215
-
-
Schlötterer, C.1
Tautz, D.2
-
80
-
-
59149105785
-
Human postmeiotic segregation 2 exhibits biased repair at tetranucleotide microsatellite sequences
-
Shah SN, Eckert KA. 2009. Human postmeiotic segregation 2 exhibits biased repair at tetranucleotide microsatellite sequences. Cancer Res. 69:1143-1149.
-
(2009)
Cancer Res.
, vol.69
, pp. 1143-1149
-
-
Shah, S.N.1
Eckert, K.A.2
-
82
-
-
69949128706
-
Structural basis of high-fidelity DNA synthesis by yeast DNA polymerase delta
-
Swan MK, Johnson RE, Prakash L, Prakash S, Aggarwal AK. 2009. Structural basis of high-fidelity DNA synthesis by yeast DNA polymerase delta. Nat Struct Mol Biol. 16:979-986.
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 979-986
-
-
Swan, M.K.1
Johnson, R.E.2
Prakash, L.3
Prakash, S.4
Aggarwal, A.K.5
-
84
-
-
0022533981
-
Cryptic simplicity in DNA is a major source of genetic variation
-
Tautz D, Trick M, Dover GA. 1986. Cryptic simplicity in DNA is a major source of genetic variation. Nature. 322:652-656.
-
(1986)
Nature
, vol.322
, pp. 652-656
-
-
Tautz, D.1
Trick, M.2
Dover, G.A.3
-
85
-
-
0033527667
-
DNA structure and DNA polymerase fidelity
-
Timsit Y. 1999. DNA structure and DNA polymerase fidelity. J Mol Biol. 293:835-853.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 835-853
-
-
Timsit, Y.1
-
86
-
-
0026059128
-
Base-pairing shift in the major groove of (CA) n tracts by B-DNA crystal structures
-
Timsit Y, Vilbois E, Moras D. 1991. Base-pairing shift in the major groove of (CA) n tracts by B-DNA crystal structures. Nature. 354:167-170.
-
(1991)
Nature
, vol.354
, pp. 167-170
-
-
Timsit, Y.1
Vilbois, E.2
Moras, D.3
-
87
-
-
0025329221
-
Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli
-
Wagner LA, Weiss RB, Driscoll R, Dunn DS, Gesteland RF. 1990. Transcriptional slippage occurs during elongation at runs of adenine or thymine in Escherichia coli. Nucleic Acids Res. 18:3529-3535.
-
(1990)
Nucleic Acids Res.
, vol.18
, pp. 3529-3535
-
-
Wagner, L.A.1
Weiss, R.B.2
Driscoll, R.3
Dunn, D.S.4
Gesteland, R.F.5
-
88
-
-
0035092492
-
Patterns of ancestral human diversity: An analysis of Alu-insertion and restriction-site polymorphisms
-
Watkins WS, et al. 2001. Patterns of ancestral human diversity: an analysis of Alu-insertion and restriction-site polymorphisms. Am J Hum Genet. 68:738-752.
-
(2001)
Am. J. Hum. Genet.
, vol.68
, pp. 738-752
-
-
Watkins, W.S.1
-
89
-
-
34548363944
-
Is there evidence for convergent evolution around human microsatellites?
-
Webster MT, Hagberg J. 2007. Is there evidence for convergent evolution around human microsatellites? Mol Biol Evol. 24:1097-1100.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1097-1100
-
-
Webster, M.T.1
Hagberg, J.2
-
90
-
-
0030808252
-
Microsatellite instability in yeast: Dependence on the length of the microsatellite
-
Wierdl M, Dominska M, Petes TD. 1997. Microsatellite instability in yeast: dependence on the length of the microsatellite. Genetics. 146:769-779. (Pubitemid 27290966)
-
(1997)
Genetics
, vol.146
, Issue.3
, pp. 769-779
-
-
Wierdl, M.1
Dominska, M.2
Petes, T.D.3
-
91
-
-
0023127913
-
Proton nuclear magnetic resonance studies on bulge-containing DNA oligonucleotides from a mutational hot-spot sequence
-
Woodson SA, Crothers DM. 1987. Proton nuclear magnetic resonance studies on bulge-containing DNA oligonucleotides from a mutational hot-spot sequence. Biochemistry. 26:904-912.
-
(1987)
Biochemistry
, vol.26
, pp. 904-912
-
-
Woodson, S.A.1
Crothers, D.M.2
-
92
-
-
33846805782
-
Conservation of noncoding microsatellites in plants: Implication for gene regulation
-
Zhang L, et al. 2006. Conservation of noncoding microsatellites in plants: implication for gene regulation. BMC Genomics. 7:323.
-
(2006)
BMC Genomics
, vol.7
, pp. 323
-
-
Zhang, L.1
-
93
-
-
0034523552
-
Insertions, substitutions, and the origin of microsatellites
-
Zhu Y, Strassmann JE, Queller DC. 2000. Insertions, substitutions, and the origin of microsatellites. Genet Res. 76:227-236.
-
(2000)
Genet. Res.
, vol.76
, pp. 227-236
-
-
Zhu, Y.1
Strassmann, J.E.2
Queller, D.C.3
|