Analysis of left-handed Z-DNA formation in short d(CG)n sequences in Escherichia coli and Halobacterium halobium plasmids: Stabilization by increasing repeat length and DNA supercoiling but not salinity

Journal of Biological Chemistry

Volumn 271, Issue 16, 1996, Pages 9340-9346

  Kim, Jong Myoung ^a   Yang, Chin Fen ^a   DasSarma, Shiladitya ^a  

^a UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ESCHERICHIA COLI; HALOBACTERIUM SALINARUM; HALOPHILIC ARCHAEON;

BACTERIAL DNA; DNA Z; SODIUM CHLORIDE;

ARTICLE; BACTERIAL GENETICS; BACTERIUM MUTANT; DNA SEQUENCE; DNA SUPERCOILING; ESCHERICHIA COLI; HALOBACTERIUM SALINARUM; NONHUMAN; PLASMID; PRIORITY JOURNAL;

BASE COMPOSITION; BASE SEQUENCE; DNA; DNA, SUPERHELICAL; ESCHERICHIA COLI; HALOBACTERIUM SALINARUM; KINETICS; NUCLEIC ACID CONFORMATION; PLASMIDS; RESTRICTION MAPPING; SODIUM CHLORIDE;

EID: 0029871364     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.271.16.9340     Document Type: Article

References (51)

1. Pohl, F. M., and Jovin, T. M. (1972) J. Mol. Biol. 67, 370-396
2. Wang, A. H.-J., Quigley, G. J., Kolpak, F. J., Crawford, J. L., van Boom, J. H., van der Marel, G., and Rich, A. (1979) Nature 282, 680-686
3. Nordheim, A., Lafer, E. M., Peck, L. J., Wang, J. C., Stollar, B. D., and Rich, A. (1982) Cell 31, 309-318
4. Singleton, C. K., Klysik, J., Stirdivant, S. M., and Wells, R. D. (1982) Nature 299, 312-316
5. Johnston, B. H., and Rich, A. (1985) Cell 42, 713-724
6. Rich, A., Nordheim, A., and Wang, A. H.-J. (1984) Annu. Rev. Biochem. 53, 791-846
7. Nordheim, A., and Rich, A. (1983) Proc. Natl. Acad. Sci. U. S. A. 80, 1821-1825
8. Peck, L. J., and Wang, J. C. (1983) Proc. Natl. Acad. Sci. U.S.A. 80, 6206-6210
9. McLean, M. J., Blaho, J. A., Kilpatrick, M. W., and Wells, R. D. (1986) Proc. Natl. Acad. Sci. U. S. A. 83, 5884-5888
10. Stirdivant, S. M., Klysik, J., and Wells, R. D. (1982) J. Biol. Chem. 257, 10159-10165
11. Wang, J. C. (1984) J. Cell Sci. Suppl. 1, 21-29
12. Ellison, M. J., Kelleher, R. J., III, Wang, A. H.-J., Habener, J. F., and Rich, A. (1985) Proc. Natl. Acad. Sci. U. S. A. 82, 8320-8324
13. Klysik, J., Stirdivant, S. M., Singleton, C. K., Zacharias, W., and Wells, R. D. (1983) J. Mol. Biol. 168, 51-71
14. Moller, A., Nordheim, A., Kozlowsk, S. A., Patel, D. J., and Rich, A. (1984) Biochemistry 23, 54-62
15. Kilpatrick, M. W., Klysik, J., Singleton, C. K., Zarling, D. A., Jovin, T. M., Henau, L. H., Erlanger, B. F., and Wells, R. D. (1984) J. Biol. Chem. 259, 7268-7274
16. Hoheisel, J. D., and Pohl, F. M. (1987) J. Mol. Biol. 193, 447-464
17. Jaworski, A., Hsieh, W.-T, Blaho, J. A., Larson, J. E., and Wells, R. D. (1987) Science 238, 773-777
18. Vlach, J., Dvorak, M., Bartunck, P., Pecenka, V., Travnicek, M., and Sponar, J. (1989) Biochem. Biophys. Res. Commun. 158, 737-742
19. Bianchi, A., Wells, R. D., Heintz, N. H., and Caddie, M. S. (1990) J. Biol. Chem. 265, 21789-21796
20. Thomas, M. J., Freeland, T. M., and Strobl, J. S. (1990) Mol. Cell. Biol. 53, 78-87
21. Wittig, B., Dorbic, T., and Rich, A. (1991) Proc. Natl. Acad. Sci. U. S. A. 88, 2259-2263
22. Ferl, R. J., and Paul, A.-L. (1992) Plant Mol. Biol. 18, 1181-1184
23. Moore, R. L., and McCarthy, B. J. (1969) J. Bacteriol. 99, 248-254
24. Yang, C.-F., Kim, J.-M., Molinari, E., and DasSarma, S. (1996) J. Bacteriol. 178, 840-845
25. Pruss, G. J., Manes, S. H., and Drlica, K. (1982) Cell 31, 35-41
26. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Ed., Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
27. DasSarma, S., RajBhandary, U. L., and Khorana, H. G. (1984) Proc. Natl. Acad. Sci. U. S. A. 81, 125-129
28. Cline, S. W., and Doolittle, W. F. (1987) J. Bacterial. 169, 1341-1344
29. Kim, J.-M. (1995) Left-handed Z-DNA in Halobacterium halobium. Ph.D. thesis, University of Massachusetts, Amherst
30. DasSarma, S., and Fleischmann, E. M. (eds) (1995) Archaea: A Laboratory Manual. Halophiles, Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
31. Lafer, E. M., Moller, A., Nordheim, A., Stollar, B. D., and Rich, A. (1981) Proc. Natl. Acad. Sci. U. S. A. 78, 3546-3550
32. Krishna, P., Morgan, A. R., and van de Sande, J. H. (1991) Biochem. J. 275, 711-719
33. Ng, W.-L., and DasSarma, S. (1993) J. Bacterial. 175, 4584-4586
34. Hackett, N. R., Krebs, M. P., DasSarma, S., Goebel, W., RajBhandary, U. L., and Khorana, H. G. (1990) Nucleic Acids Res. 18, 3408
35. Keller, W. (1975) Proc. Natl. Acad. Sci. U. S. A. 72, 4876-4880
36. Singleton, C. K., and Wells, R. D. (1982) Anal. Biochem. 122, 253-257
37. Revet, B., Zarling, D. A., Jovin, T. M., and Delain, E. (1984) EMBO J. 3, 3353-3358
38. Lafer, E. M., Sousa, R., and Rich, A. (1985) EMBO J. 4, 3655-3660
39. Azorin, F., Hahn, R., and Rich, A. (1984) Proc. Natl. Acad. Sci U. S. A. 81, 5714-5718
40. Lesnik, E. A., Bes'chetnikova, Z. A., Maslova, R. N., and Varshavsky, J. M. (1991) FEBS Lett. 280, 91-93
41. Klysik, J., Stirdivant, S. M., Larson, J. E., Hart, P. A., and Wells, R. D. (1981) Nature 290, 672-676
42. Sternglanz, R., DiNardo, S., Voelkel, K. A., Nishimura, Y., Hirota, Y., Becherer, K., Zumstein, L., and Wang, J. C. (1981) Proc. Natl Acad. Sci. U. S. A. 78, 2747-2751
43. Chen, D., Bowater, R., Dorman, C. J., and Lilley, D. M. J. (1992) Proc. Natl. Acad. Sci. U. S. A. 89, 8784-8788
44. Singleton, C. K., Klysik. J., and Wells, R. D. (1983) Proc. Natl. Acad. Sci. U. S. A. 80, 2447-2451
45. Nordheim, A., and Rich, A. (1983) Nature 303, 674-679
46. Ho, P. S., Ellison, M. J., Quigley, G. J., and Rich, A. (1986) EMBO J. 5, 2737-2744
47. Thomas, T. J., Baarsch, M. J., and Messner, R. P. (1988) Anal. Biochem. 168, 358-366
48. Quadrifoglio, F., Manzini, G., Vasser, M., Dinkelspiel, K., and Crea, R. (1981) Nucleic Acids Res. 9, 2195-2206
49. Anderson, P., and Bauer, W. R. (1978) Biochemistry 17, 594-601
50. Thomas, T. J., Gunnia, U. B., and Thomas, T. (1991) J. Biol. Chem. 266, 6137-6141
51. Lukomski, S., and Wells, R. D. (1994) Proc. Natl. Acad. Sci. U. S. A. 91, 9980-9984