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Volumn 341, Issue 1-2, 2004, Pages 149-165

Some microsatellites may act as novel polymorphic cis-regulatory elements through transcription factor binding

Author keywords

Polypyrimidine; Promoter; Repeats; Triplex

Indexed keywords

CIS ACTING ELEMENT; DNA BASE; DOUBLE STRANDED DNA; MICROSATELLITE DNA; POLYPYRIMIDINE TRACT BINDING PROTEIN; SINGLE STRANDED DNA; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR SP1;

EID: 5044234452     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.06.035     Document Type: Article
Times cited : (43)

References (35)
  • 1
    • 0035880416 scopus 로고    scopus 로고
    • Quantitative effects on gene silencing by allelic variation at a tetranucleotide microsatellite
    • V. Albanese, N.F. Biguet, H. Kiefer, E. Bayard, J. Mallet, and R. Meloni Quantitative effects on gene silencing by allelic variation at a tetranucleotide microsatellite Hum. Mol. Genet. 10 2001 1785 1792
    • (2001) Hum. Mol. Genet. , vol.10 , pp. 1785-1792
    • Albanese, V.1    Biguet, N.F.2    Kiefer, H.3    Bayard, E.4    Mallet, J.5    Meloni, R.6
  • 2
    • 0030999532 scopus 로고    scopus 로고
    • Polypurine/polypyrimidine sequences as cis-acting transcriptional regulators
    • S.K. Brahmachari, P.S. Sarkar, S. Raghavan, M. Narayan, and A.K. Maiti Polypurine/polypyrimidine sequences as cis-acting transcriptional regulators Gene 190 1997 17 26
    • (1997) Gene , vol.190 , pp. 17-26
    • Brahmachari, S.K.1    Sarkar, P.S.2    Raghavan, S.3    Narayan, M.4    Maiti, A.K.5
  • 3
    • 0029932545 scopus 로고    scopus 로고
    • The polypyrimidine tract binding (PTB) protein interacts with single-stranded DNA in a sequence-specific manner
    • F. Brunel, M.M. Zakin, H. Buc, and M. Buckle The polypyrimidine tract binding (PTB) protein interacts with single-stranded DNA in a sequence-specific manner Nucleic Acids Res. 24 1996 1608 1615
    • (1996) Nucleic Acids Res. , vol.24 , pp. 1608-1615
    • Brunel, F.1    Zakin, M.M.2    Buc, H.3    Buckle, M.4
  • 5
    • 0025297864 scopus 로고
    • Effect of length, supercoiling, and pH on intramolecular triplex formation. Multiple conformers at pur.pyr mirror repeats
    • D.A. Collier, and R.D. Wells Effect of length, supercoiling, and pH on intramolecular triplex formation. Multiple conformers at pur.pyr mirror repeats J. Biol. Chem. 265 1990 10652 10658
    • (1990) J. Biol. Chem. , vol.265 , pp. 10652-10658
    • Collier, D.A.1    Wells, R.D.2
  • 6
    • 0036510121 scopus 로고    scopus 로고
    • A polymorphic microsatellite that mediates induction of PIG3 by p53
    • A. Contente, A. Dittmer, M.C. Koch, J. Roth, and M. Dobbelstein A polymorphic microsatellite that mediates induction of PIG3 by p53 Nat. Genet. 30 2002 315 320
    • (2002) Nat. Genet. , vol.30 , pp. 315-320
    • Contente, A.1    Dittmer, A.2    Koch, M.C.3    Roth, J.4    Dobbelstein, M.5
  • 8
    • 0034788585 scopus 로고    scopus 로고
    • Effect of triplet repeat expansion on chromatin structure and expression of DMPK and neighboring genes, SIX5 and DMWD, in myotonic dystrophy
    • R. Frisch, K.R. Singleton, P.A. Moses, I.L. Gonzalez, P. Carango, H.G. Marks, and V.L. Funanage Effect of triplet repeat expansion on chromatin structure and expression of DMPK and neighboring genes, SIX5 and DMWD, in myotonic dystrophy Mol. Genet. Metab. 74 2001 281 291
    • (2001) Mol. Genet. Metab. , vol.74 , pp. 281-291
    • Frisch, R.1    Singleton, K.R.2    Moses, P.A.3    Gonzalez, I.L.4    Carango, P.5    Marks, H.G.6    Funanage, V.L.7
  • 11
    • 0033052101 scopus 로고    scopus 로고
    • Polypyrimidine-tract binding protein (PTB) is necessary, but not sufficient, for efficient internal initiation of translation of human rhinovirus-2 RNA
    • S.L. Hunt, and R.J. Jackson Polypyrimidine-tract binding protein (PTB) is necessary, but not sufficient, for efficient internal initiation of translation of human rhinovirus-2 RNA RNA 5 1999 344 359
    • (1999) RNA , vol.5 , pp. 344-359
    • Hunt, S.L.1    Jackson, R.J.2
  • 12
    • 0031081111 scopus 로고    scopus 로고
    • Simple sequence repeats as a source of quantitative genetic variation
    • Y. Kashi, D. King, and M. Soller Simple sequence repeats as a source of quantitative genetic variation Trends Genet. 13 1997 74 78
    • (1997) Trends Genet. , vol.13 , pp. 74-78
    • Kashi, Y.1    King, D.2    Soller, M.3
  • 13
    • 0034607554 scopus 로고    scopus 로고
    • Proteinâ€"protein interaction among hnRNPs shuttling between nucleus and cytoplasm
    • J.H. Kim, B. Hahm, Y.K. Kim, M. Choi, and S.K. Jang Protein†"protein interaction among hnRNPs shuttling between nucleus and cytoplasm J. Mol. Biol. 298 2000 395 405
    • (2000) J. Mol. Biol. , vol.298 , pp. 395-405
    • Kim, J.H.1    Hahm, B.2    Kim, Y.K.3    Choi, M.4    Jang, S.K.5
  • 14
    • 0023433855 scopus 로고
    • Supercoiling of the DNA template during transcription
    • L.F. Liu, and J.C. Wang Supercoiling of the DNA template during transcription Proc. Natl. Acad Sci. U. S. A. 84 1987 7024 7027
    • (1987) Proc. Natl. Acad Sci. U. S. A. , vol.84 , pp. 7024-7027
    • Liu, L.F.1    Wang, J.C.2
  • 15
    • 0344096705 scopus 로고    scopus 로고
    • The (gt)n(ga)m containing intron 2 of HLAâ€"DRB alleles binds a zinc-dependent protein and forms non B-DNA structures
    • W. Maueler, G. Bassili, R. Arnold, R. Renkawitz, and J.T. Epplen The (gt)n(ga)m containing intron 2 of HLAâ€"DRB alleles binds a zinc-dependent protein and forms non B-DNA structures Gene 226 1999 9 23
    • (1999) Gene , vol.226 , pp. 9-23
    • Maueler, W.1    Bassili, G.2    Arnold, R.3    Renkawitz, R.4    Epplen, J.T.5
  • 17
    • 0029880654 scopus 로고    scopus 로고
    • Formation of a triple-stranded DNA between d(GGA:TCC) repeats and d(GGA) repeat oligonucleotides
    • Y. Mishima, T. Suda, and R. Kominami Formation of a triple-stranded DNA between d(GGA:TCC) repeats and d(GGA) repeat oligonucleotides J. Biochem. 119 1996 805 810
    • (1996) J. Biochem. , vol.119 , pp. 805-810
    • Mishima, Y.1    Suda, T.2    Kominami, R.3
  • 18
    • 0030726763 scopus 로고    scopus 로고
    • n repeats and promotion by high mobility group protein 1 and histone H1
    • n repeats and promotion by high mobility group protein 1 and histone H1 J. Biol. Chem. 272 1997 26578 26584
    • (1997) J. Biol. Chem. , vol.272 , pp. 26578-26584
    • Mishima, Y.1    Kaizu, H.2    Kominami, R.3
  • 19
    • 0036765863 scopus 로고    scopus 로고
    • Triplex-forming DNAs in the human interphase nucleus visualized in situ by polypurine/polypyrimidine DNA probes and antitriplex antibodies
    • M. Ohno, T. Fukagawa, J.S. Lee, and T. Ikemura Triplex-forming DNAs in the human interphase nucleus visualized in situ by polypurine/polypyrimidine DNA probes and antitriplex antibodies Chromosoma 111 2002 201 213
    • (2002) Chromosoma , vol.111 , pp. 201-213
    • Ohno, M.1    Fukagawa, T.2    Lee, J.S.3    Ikemura, T.4
  • 21
    • 0026504544 scopus 로고
    • Diverse transcriptional functions of the multisubunit eukaryotic TFIID complex
    • B.F. Pugh, and R. Tjian Diverse transcriptional functions of the multisubunit eukaryotic TFIID complex J. Biol. Chem. 267 1992 679 682
    • (1992) J. Biol. Chem. , vol.267 , pp. 679-682
    • Pugh, B.F.1    Tjian, R.2
  • 22
    • 0028971143 scopus 로고
    • MatInd and MatInspector: New fast and versatile tools for detection of consensus matches in nucleotide sequence data
    • K. Quandt, K. Frech, H. Karas, E. Wingender, and T. Werner MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data Nucleic Acids Res. 23 1995 4878 4884
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4878-4884
    • Quandt, K.1    Frech, K.2    Karas, H.3    Wingender, E.4    Werner, T.5
  • 23
    • 0033969298 scopus 로고    scopus 로고
    • Transcription of the human c-Src promoter is dependent on Sp1, a novel pyrimidine binding factor SPy, and can be inhibited by triplex-forming oligonucleotides
    • S. Ritchie, F.M. Boyd, J. Wong, and K. Bonham Transcription of the human c-Src promoter is dependent on Sp1, a novel pyrimidine binding factor SPy, and can be inhibited by triplex-forming oligonucleotides J. Biol. Chem. 275 2000 847 854
    • (2000) J. Biol. Chem. , vol.275 , pp. 847-854
    • Ritchie, S.1    Boyd, F.M.2    Wong, J.3    Bonham, K.4
  • 24
    • 0035979178 scopus 로고    scopus 로고
    • A polymorphic dinucleotide repeat in the rat nucleolin gene forms Z-DNA and inhibits promoter activity
    • S. Rothenburg, F. Koch-Nolte, A. Rich, and F. Haag A polymorphic dinucleotide repeat in the rat nucleolin gene forms Z-DNA and inhibits promoter activity Proc. Natl. Acad Sci. U. S. A. 98 2001 8985 8990
    • (2001) Proc. Natl. Acad Sci. U. S. A. , vol.98 , pp. 8985-8990
    • Rothenburg, S.1    Koch-Nolte, F.2    Rich, A.3    Haag, F.4
  • 25
    • 0029620648 scopus 로고
    • Microsatellites evolve more rapidly in humans than in chimpanzees
    • D.C. Rubinsztein, J. Leggo, and W. Amos Microsatellites evolve more rapidly in humans than in chimpanzees Genomics 30 1995 610 612
    • (1995) Genomics , vol.30 , pp. 610-612
    • Rubinsztein, D.C.1    Leggo, J.2    Amos, W.3
  • 26
    • 0037192176 scopus 로고    scopus 로고
    • A polypyrimidine/polypurine tract within the Hmga2 minimal promoter: A common feature of many growth-related genes
    • A. Rustighi, M.A. Tessari, F. Vascotto, R. Sgarra, V. Giancotti, and G. Manfioletti A polypyrimidine/polypurine tract within the Hmga2 minimal promoter: a common feature of many growth-related genes Biochemistry 41 2002 1229 1240
    • (2002) Biochemistry , vol.41 , pp. 1229-1240
    • Rustighi, A.1    Tessari, M.A.2    Vascotto, F.3    Sgarra, R.4    Giancotti, V.5    Manfioletti, G.6
  • 27
    • 0029097232 scopus 로고
    • Formation of a parallel-stranded DNA homoduplex by d(GGA) repeat oligonucleotides
    • T. Suda, Y. Mishima, H. Asakura, and R. Kominami Formation of a parallel-stranded DNA homoduplex by d(GGA) repeat oligonucleotides Nucleic Acids Res. 23 1995 3771 3777
    • (1995) Nucleic Acids Res. , vol.23 , pp. 3771-3777
    • Suda, T.1    Mishima, Y.2    Asakura, H.3    Kominami, R.4
  • 29
    • 0028905957 scopus 로고
    • Heterogeneous nuclear ribonucleoprotein K is a DNA-binding transactivator
    • T. Tomonaga, and D. Levens Heterogeneous nuclear ribonucleoprotein K is a DNA-binding transactivator J. Biol. Chem. 270 1995 4875 4881
    • (1995) J. Biol. Chem. , vol.270 , pp. 4875-4881
    • Tomonaga, T.1    Levens, D.2
  • 30
    • 0032167572 scopus 로고    scopus 로고
    • NGG-triplet repeats form similar intrastrand structures: Implications for the triplet expansion diseases
    • K. Usdin NGG-triplet repeats form similar intrastrand structures: implications for the triplet expansion diseases Nucleic Acids Res. 26 1998 4078 4085
    • (1998) Nucleic Acids Res. , vol.26 , pp. 4078-4085
    • Usdin, K.1
  • 31
    • 0034980722 scopus 로고    scopus 로고
    • Evidence for functionally significant polymorphism of human glutamate cysteine ligase catalytic subunit: Association with glutathione levels and drug resistance in the National Cancer Institute tumor cell line panel
    • A.C. Walsh, J.A. Feulner, and A. Reilly Evidence for functionally significant polymorphism of human glutamate cysteine ligase catalytic subunit: association with glutathione levels and drug resistance in the National Cancer Institute tumor cell line panel Toxicol. Sci. 61 2001 218 223
    • (2001) Toxicol. Sci. , vol.61 , pp. 218-223
    • Walsh, A.C.1    Feulner, J.A.2    Reilly, A.3
  • 32
    • 0027161022 scopus 로고
    • Mutation of human short tandem repeats
    • J.L. Weber, and C. Wong Mutation of human short tandem repeats Hum. Mol. Genet. 2 1993 1123 1128
    • (1993) Hum. Mol. Genet. , vol.2 , pp. 1123-1128
    • Weber, J.L.1    Wong, C.2
  • 34
    • 0033925281 scopus 로고    scopus 로고
    • Microsatellite polymorphism in the heme oxygenase-1 gene promoter is associated with susceptibility to emphysema
    • N. Yamada, M. Yamaya, S. Okinaga, K. Nakayama, K. Sekizawa, S. Shibahara, and H. Sasaki Microsatellite polymorphism in the heme oxygenase-1 gene promoter is associated with susceptibility to emphysema Am. J. Hum. Genet. 66 2000 187 195
    • (2000) Am. J. Hum. Genet. , vol.66 , pp. 187-195
    • Yamada, N.1    Yamaya, M.2    Okinaga, S.3    Nakayama, K.4    Sekizawa, K.5    Shibahara, S.6    Sasaki, H.7


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