Distinct frequency-distributions of homopolymeric DNA tracts in different genomes

Nucleic Acids Research

Volumn 26, Issue 17, 1998, Pages 4056-4062

  Dechering, Koen J ^a,b   Cuelenaere, Koen ^a   Konings, Ruud N H ^a   Leunissen, Jack A M ^a  

^a RADBOUD UNIVERSITY NIJMEGEN   (Netherlands)

^b NV ORGANON   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARABIDOPSIS; ARTICLE; CAENORHABDITIS ELEGANS; DNA BASE COMPOSITION; DNA REPLICATION; DNA SEQUENCE; ESCHERICHIA COLI; GENE FREQUENCY; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; PLASMODIUM FALCIPARUM; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE;

ARABIDOPSIS; ARABIDOPSIS THALIANA; CAENORHABDITIS ELEGANS; EMBRYOPHYTA; ESCHERICHIA COLI; EUKARYOTA; HOMO SAPIENS; INVERTEBRATA; MYCOBACTERIUM; MYCOBACTERIUM TUBERCULOSIS; PLASMODIUM FALCIPARUM; PROKARYOTA; PROTOZOA; SACCHAROMYCES CEREVISIAE;

EID: 0032167569     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/26.17.4056     Document Type: Article

References (46)

1. Hyde,J.E. and Sims,P.F.G. (1987) Gene, 61, 177-187.
2. Musto,H., Rodriguez Maseda,H. and Bernardi,G. (1995) Gene. 152, 127-132.
3. Nelson,H.C.M., Finch,J.T., Luisi,B.F. and Klug,A. (1987) Nature. 330, 221-226.
4. Marini,J.C., Levene,S.D., Crothers,D.M. and Englund,P.T. (1982) Proc. Natl Acad. Sci. USA, 79, 7664-7668.
5. Koo,H.-S., Wu,H.-M. and Crothers,D.M. (1986) Nature, 320, 501-506.
6. Goodsell,D.S., Kaczor-Grzeskowiak,M. and Dickerson,R.E. (1994) J. Mol. Biol., 239, 79-96.
7. Cress,D.W. and Nevins,J.R. (1996) Mol. Cell. Biol., 16, 2119-2127.
8. Parvin,J.D., McCormick,R.J., Sharp,P.A. and Fisher,D.E. (1995) Nature, 373, 724-727.
9. Zhu,Z. and Thiele,D.J. (1996) Cell, 87, 459-470.
10. Struhl,K. (1985) Proc. Natl Acad. Sci. USA, 82, 8419-8423.
11. Iyer,V. and Struhl,K. (1995) EMBO J., 14, 2570-2579.
12. Kaes,E., Izaurralde,E. and Laemmli,U.K. (1989) J. Mol. Biol., 210, 587-599.
13. Gasser,S.M. and Laemlli,U.K. (1986) Cell. 46, 521-530.
14. Kaes,E. and Laemmli,U.K. (1992) EMBO J., 11, 705-716.
15. Miassod,R., Razin,S.V. and Hancock,R. (1997) Nucleic Acids Res., 25, 2041-2046.
16. Levinson,G. and Gutman,G.A. (1987) Mol. Biol. Evol., 4, 203-221.
17. Treier,M., Pfeifle,C. and Tautz,D. (1989) EMBO J., 8, 1517-1525.
18. Hancock,J.M. (1993) Nucleic Acids Res. 21, 2823-2830.
19. Hancock,J.M. (1995) J. Mol. Evol., 41, 1038-1047.
20. Richards,R.I. and Sutherland,G.R. (1994) Nature Genet., 6, 114-116.
21. Bates,G. and Lehrach,H. (1994) Bioessays, 16, 277-284.
22. Walsh,J.B. (1987) Genetics, 115, 553-567.
23. Tautz,D., Trick,M. and Dover,G.A. (1986) Nature, 322, 652-656.
24. Hancock,J.M. (1996) Bioessays, 18, 421-425.
25. Devereux,J., Haeberli,P. and Smithies,O. (1984) Nucleic Acids Res., 12, 387-395.
26. Marx,K.A., Hess,S.T. and Blake,R.D. (1993) J. Biomol. Struct. Dynamics, 11, 57-66.
27. Dame,J.B., Arnot,D.E., Bourke,P.F., Chakrabarti,D., Christodoulou,Z., Coppel,R.L., Cowman,A.F., Craig,A.G., Fischer,K., Foster,J. et al. (1996) Mol. Biochem. Parasitol., 79, 1-12.
28. Lanzer,M., de Bruin,D. and Ravetch,J.V. (1993) Nature, 361, 654-657.
29. McCutchan,T.F., Dame,J.B., Miller,L.H. and Barnwell,J. (1984) Science, 225, 808-811.
30. Pollack,Y., Katzen,A.L., Spira,D.T. and Golenser,J. (1982) Nucleic Acids Res., 10, 539-546.
31. Newfeld,S.J., Tachida,H. and Yedvobnick,B. (1994) J. Mol. Evol., 38, 637-641.
32. Tachida,H. and Iizuka,M. (1992) Genetics, 131, 471-478.
33. Cox,R. and Mirkin,S.M. (1997) Proc. Natl Acad. Sci. USA, 94, 5237-5242.
34. Schlötterer,C. and Tautz,D. (1992) Nucleic Acids Res., 20, 211-215.
35. Blattner,F.R., Plunket,III,G., Bloch,C.A., Perna,N.T., Burland,V., Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C.K., Mayhew,G.F., Gregor,J., Wayne Davis,N., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J., Mau,B. and Shao,Y. (1997) Science, 277, 1453-1462.
36. Doolittle,W.F. and Sapienza,C. (1980) Nature, 284, 601-603.
37. Henderson,S.T. and Petes,T.D. (1992) Mol. Cell. Biol., 12, 2749-2757.
38. Tran,H.T., Degtyareva,N.P., Koloteva,N.N., Sugino,A., Masumoto,H., Gordenin,D.A. and Resnick,M.A. (1995) Mol. Cell. Biol., 15, 5607-5617.
39. Farber,R.A., Petes,T.D., Dominska,M., Hudgens,S.S. and Liskay,R.M. (1994) Hum. Mol. Genet., 3, 253-256.
40. Vologodskii,A. (1992) Topology and Physics of Circular DNA. CRC Press, Boca Raton, FL.
41. Saitoh,N., Goldberg,I. and Earnshaw,W.C. (1995) Bioessays, 17, 759-766.
42. Pologe,L.G., De Bruin,D. and Ravetch,J.V. (1990) Mol. Cell. Biol., 10, 3243-3246.
43. Weber,J.L. (1988) Exp. Parasitol., 66, 143-170.
44. Cavalier-Smith,T. (1985) In Cavalier-Smith,T. (ed.), The Evolution of Genome Size. John Wiley, New York, pp. 69-103.
45. Hodgkin,J., Plasterk,R.H.A. and Waterson,R.H. (1995) Science, 270, 410-414.
46. Schmidt,R., West,J., Love,K., Lenehan,Z., Lister,C., Thompson,H., Bouchez,D. and Dean,C. (1995) Science, 270, 480-483.