-
1
-
-
35748979923
-
Comparative and pharmacophore model for deacetylase SIRT1
-
Huhtiniemi T, Wittekindt C, Laitinen T, Leppänen J, Salminen A, et al.(2006) Comparative and pharmacophore model for deacetylase SIRT1. J Comput Aided Mol Des 20: 589-99.
-
(2006)
J Comput Aided Mol Des
, vol.20
, pp. 589-599
-
-
Huhtiniemi, T.1
Wittekindt, C.2
Laitinen, T.3
Leppänen, J.4
Salminen, A.5
-
2
-
-
35349011726
-
Active regulator of SIRT1 cooperates with SIRT1 and facilitates suppression of p53 activity
-
Kim EJ, Kho JH, Kang MR, Um SJ, (2007) Active regulator of SIRT1 cooperates with SIRT1 and facilitates suppression of p53 activity. Mol Cell 28: 277-90.
-
(2007)
Mol Cell
, vol.28
, pp. 277-290
-
-
Kim, E.J.1
Kho, J.H.2
Kang, M.R.3
Um, S.J.4
-
3
-
-
58149202185
-
Phosphorylation regulates SIRT1 function
-
Sasaki T, Maier B, Koclega KD, Chruszcz M, Gluba W, et al.(2008) Phosphorylation regulates SIRT1 function. PLoS ONE 3: e4020.
-
(2008)
PLoS ONE
, vol.3
-
-
Sasaki, T.1
Maier, B.2
Koclega, K.D.3
Chruszcz, M.4
Gluba, W.5
-
4
-
-
34547875773
-
Sirtuins: critical regulators at the crossroads between cancer and aging
-
Saunders LR, Verdin E, (2007) Sirtuins: critical regulators at the crossroads between cancer and aging. Oncogene 26: 5489-5504.
-
(2007)
Oncogene
, vol.26
, pp. 5489-5504
-
-
Saunders, L.R.1
Verdin, E.2
-
5
-
-
0035913903
-
hSIR2(SIRT1) functions as an NAD-dependent p53 deacetylase
-
Vaziri H, Dessain SK, Ng Eaton E, Imai SI, Frye RA, et al.(2001) hSIR2(SIRT1) functions as an NAD-dependent p53 deacetylase. Cell 107: 149-159.
-
(2001)
Cell
, vol.107
, pp. 149-159
-
-
Vaziri, H.1
Dessain, S.K.2
Ng Eaton, E.3
Imai, S.I.4
Frye, R.A.5
-
6
-
-
16344384026
-
Suppression of FOXO1 activity by FHL2 through SIRT1-mediated deacetylation
-
Yang Y, Hou H, Haller EM, Nicosia SV, Bai W, (2005) Suppression of FOXO1 activity by FHL2 through SIRT1-mediated deacetylation. EMBO J 24: 1021-1032.
-
(2005)
EMBO J
, vol.24
, pp. 1021-1032
-
-
Yang, Y.1
Hou, H.2
Haller, E.M.3
Nicosia, S.V.4
Bai, W.5
-
7
-
-
14544282413
-
Nutrient control of glucose homeostasis through a complex of PGC-1alpha and SIRT1
-
Rodgers JT, Lerin C, Haas W, Gygi SP, Spiegelman BM, et al.(2005) Nutrient control of glucose homeostasis through a complex of PGC-1alpha and SIRT1. Nature 434: 113-118.
-
(2005)
Nature
, vol.434
, pp. 113-118
-
-
Rodgers, J.T.1
Lerin, C.2
Haas, W.3
Gygi, S.P.4
Spiegelman, B.M.5
-
8
-
-
35549008884
-
SIRT1 promotes endothelium-dependent vascular relaxation by activating endothelial nitric oxide synthase
-
Mattagajasingh I, Kim CS, Naqvi A, Yamamori T, Hoffman TA, et al.(2007) SIRT1 promotes endothelium-dependent vascular relaxation by activating endothelial nitric oxide synthase. Proc Natl Acad Sci USA 104: 14855-14860.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 14855-14860
-
-
Mattagajasingh, I.1
Kim, C.S.2
Naqvi, A.3
Yamamori, T.4
Hoffman, T.A.5
-
9
-
-
3042681042
-
Sirt1 promotes fat mobilization in white adipocytes by repressing PPARgamma
-
Picard F, Kurtev M, Chung N, Topark-Ngarm A, Senawong T, et al.(2004) Sirt1 promotes fat mobilization in white adipocytes by repressing PPARgamma. Nature 429: 771-776.
-
(2004)
Nature
, vol.429
, pp. 771-776
-
-
Picard, F.1
Kurtev, M.2
Chung, N.3
Topark-Ngarm, A.4
Senawong, T.5
-
10
-
-
42649146208
-
SIRT1, an antiinflammatory and antiaging protein, is decreased in lungs of patients with chronic obstructive pulmonary disease
-
Rajendrasozhan S, Yang SR, Kinnula VL, Rahman I, (2008) SIRT1, an antiinflammatory and antiaging protein, is decreased in lungs of patients with chronic obstructive pulmonary disease. Am J Respir Crit Care Med 177: 861-870.
-
(2008)
Am J Respir Crit Care Med
, vol.177
, pp. 861-870
-
-
Rajendrasozhan, S.1
Yang, S.R.2
Kinnula, V.L.3
Rahman, I.4
-
11
-
-
36248935670
-
Sirt1 interacts with transducin-like enhancer of split-1 to inhibit nuclear factor kappaB-mediated transcription
-
Ghosh HS, Spencer JV, Ng B, McBurney MW, Robbins PD, (2007) Sirt1 interacts with transducin-like enhancer of split-1 to inhibit nuclear factor kappaB-mediated transcription. Biochem J 408: 105-111.
-
(2007)
Biochem J
, vol.408
, pp. 105-111
-
-
Ghosh, H.S.1
Spencer, J.V.2
Ng, B.3
McBurney, M.W.4
Robbins, P.D.5
-
12
-
-
0033214237
-
The SIR2/3/4 complex and SIR2 alone promote longevity in Saccharomyces cerevisiae by two different mechanisms
-
Kaeberlein M, McVey M, Guarente L, (1999) The SIR2/3/4 complex and SIR2 alone promote longevity in Saccharomyces cerevisiae by two different mechanisms. Genes Dev 13: 2570-80.
-
(1999)
Genes Dev
, vol.13
, pp. 2570-2580
-
-
Kaeberlein, M.1
McVey, M.2
Guarente, L.3
-
13
-
-
33746245679
-
C. elegans 14-3-3 proteins regulate life span and interact with SIR-2.1 and DAF-16/FOXO
-
Wang Y, Oh SW, Deplancke B, Luo J, Walhout AJ, et al.(2006) C. elegans 14-3-3 proteins regulate life span and interact with SIR-2.1 and DAF-16/FOXO. Mech Ageing Dev 127: 741-747.
-
(2006)
Mech Ageing Dev
, vol.127
, pp. 741-747
-
-
Wang, Y.1
Oh, S.W.2
Deplancke, B.3
Luo, J.4
Walhout, A.J.5
-
14
-
-
3943071801
-
Sirtuin activators mimic caloric restriction and delay ageing in metazoans
-
Wood JG, Rogina B, Lavu S, Howitz K, Helfand SL, et al.(2004) Sirtuin activators mimic caloric restriction and delay ageing in metazoans. Nature 430: 686-689.
-
(2004)
Nature
, vol.430
, pp. 686-689
-
-
Wood, J.G.1
Rogina, B.2
Lavu, S.3
Howitz, K.4
Helfand, S.L.5
-
16
-
-
34547914840
-
Sirtuins: the 'magnificent seven', function, metabolism and longevity
-
Dali-Youcef N, Lagouge M, Froelich S, Koehl C, Schoonjans K, et al.(2007) Sirtuins: the 'magnificent seven', function, metabolism and longevity. Ann Med 39: 335-345.
-
(2007)
Ann Med
, vol.39
, pp. 335-345
-
-
Dali-Youcef, N.1
Lagouge, M.2
Froelich, S.3
Koehl, C.4
Schoonjans, K.5
-
17
-
-
33751113602
-
Mammalian sirtuins-emerging roles in physiology, aging, and calorie restriction
-
Haigis MC, Guarente LP, (2006) Mammalian sirtuins-emerging roles in physiology, aging, and calorie restriction. Genes Dev 20: 2913-2921.
-
(2006)
Genes Dev
, vol.20
, pp. 2913-2921
-
-
Haigis, M.C.1
Guarente, L.P.2
-
18
-
-
34848817393
-
Diabetes Spectrum
-
Hollander P, (2007) Diabetes Spectrum 20: 159.
-
(2007)
, vol.20
, pp. 159
-
-
Hollander, P.1
-
19
-
-
36749087548
-
Small molecule activators of SIRT1 as therapeutics for the treatment of type 2 diabetes
-
Milne JC, Lambert PD, Schenk S, Carney DP, Smith JJ, et al.(2007) Small molecule activators of SIRT1 as therapeutics for the treatment of type 2 diabetes. Nature 450: 712-6.
-
(2007)
Nature
, vol.450
, pp. 712-716
-
-
Milne, J.C.1
Lambert, P.D.2
Schenk, S.3
Carney, D.P.4
Smith, J.J.5
-
20
-
-
63149150180
-
Discovery of oxazolo4,5-b.pyridines and related heterocyclic analogs as novel SIRT1 activators
-
Bemis JE, Vu CB, Xie R, Nunes JJ, Ng PY, et al.(2009) Discovery of oxazolo4,5-b.pyridines and related heterocyclic analogs as novel SIRT1 activators. Bioorg Med Chem Lett 19: 2350-3.
-
(2009)
Bioorg Med Chem Lett
, vol.19
, pp. 2350-2353
-
-
Bemis, J.E.1
Vu, C.B.2
Xie, R.3
Nunes, J.J.4
Ng, P.Y.5
-
21
-
-
2942534101
-
Structural basis for nicotinamide cleavage and ADP-ribose transfer by NAD(+)-dependent Sir2 histone/protein deacetylases
-
Zhao K, Harshaw R, Chai X, Marmorstein R, (2004) Structural basis for nicotinamide cleavage and ADP-ribose transfer by NAD(+)-dependent Sir2 histone/protein deacetylases. Proc Natl Acad Sci USA 101: 8563.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 8563
-
-
Zhao, K.1
Harshaw, R.2
Chai, X.3
Marmorstein, R.4
-
22
-
-
0037072885
-
Structural basis for the NAD-dependent deacetylase mechanism of Sir2
-
Chang JH, Kim HC, Hwang KY, Lee JW, Jackson SP, et al.(2002) Structural basis for the NAD-dependent deacetylase mechanism of Sir2. J Biol Chem 277: 34489-34498.
-
(2002)
J Biol Chem
, vol.277
, pp. 34489-34498
-
-
Chang, J.H.1
Kim, H.C.2
Hwang, K.Y.3
Lee, J.W.4
Jackson, S.P.5
-
24
-
-
0035917536
-
Crystal structure of a SIR2 homolog-NAD complex
-
Min J, Landry J, Sternglanz R, Xu RM, (2001) Crystal structure of a SIR2 homolog-NAD complex. Cell 105: 269.
-
(2001)
Cell
, vol.105
, pp. 269
-
-
Min, J.1
Landry, J.2
Sternglanz, R.3
Xu, R.M.4
-
25
-
-
15244355745
-
Mechanism of sirtuin inhibition by nicotinamide: altering the NAD(+) cosubstrate specificity of a Sir2 enzyme
-
Avalos JL, Bever KM, Wolberger C, (2005) Mechanism of sirtuin inhibition by nicotinamide: altering the NAD(+) cosubstrate specificity of a Sir2 enzyme. Mol Cell 17: 855.
-
(2005)
Mol Cell
, vol.17
, pp. 855
-
-
Avalos, J.L.1
Bever, K.M.2
Wolberger, C.3
-
26
-
-
1542298916
-
Structure and Substrate Binding Properties of cobB, a Sir2 Homolog Protein Deacetylase from Escherichia coli
-
Zhao K, Chai X, Marmorstein R, (2004) Structure and Substrate Binding Properties of cobB, a Sir2 Homolog Protein Deacetylase from Escherichia coli. Journal of Molecular Biology 337: 731.
-
(2004)
Journal of Molecular Biology
, vol.337
, pp. 731
-
-
Zhao, K.1
Chai, X.2
Marmorstein, R.3
-
27
-
-
33947203766
-
Evaluation of the structural quality of modeled proteins by using globularity criteria
-
Costantini S, Facchiano AM, Colonna G, (2007) Evaluation of the structural quality of modeled proteins by using globularity criteria. BMC Structural Biology 7: 9.
-
(2007)
BMC Structural Biology
, vol.7
, pp. 9
-
-
Costantini, S.1
Facchiano, A.M.2
Colonna, G.3
-
29
-
-
38049047165
-
Molecular modelling of miraculin: structural analyses and functional hypotheses
-
Paladino A, Costantini S, Colonna G, Facchiano AM, (2008) Molecular modelling of miraculin: structural analyses and functional hypotheses. Biochemical and Biophysical Research Communications 367: 26-32.
-
(2008)
Biochemical and Biophysical Research Communications
, vol.367
, pp. 26-32
-
-
Paladino, A.1
Costantini, S.2
Colonna, G.3
Facchiano, A.M.4
-
30
-
-
0034663597
-
Application of enhanced multiple sequence alignment profiles to improve protein secondary structure prediction
-
Cuff JA, Barton GJ, (2000) Application of enhanced multiple sequence alignment profiles to improve protein secondary structure prediction. Proteins: Structure, Function and Genetics 40: 502-511.
-
(2000)
Proteins: Structure, Function and Genetics
, vol.40
, pp. 502-511
-
-
Cuff, J.A.1
Barton, G.J.2
-
31
-
-
58849136179
-
Prediction of the protein structural class by specific peptide frequencies
-
Costantini S, Facchiano AM, (2009) Prediction of the protein structural class by specific peptide frequencies. Biochimie 91: 226-9.
-
(2009)
Biochimie
, vol.91
, pp. 226-229
-
-
Costantini, S.1
Facchiano, A.M.2
-
32
-
-
36749031065
-
ClusPro: performance in CAPRI rounds 6-11 and the new server
-
Comeau SR, Kozakov D, Brenke R, Shen Y, Beglov D, et al.(2007) ClusPro: performance in CAPRI rounds 6-11 and the new server. Proteins 69: 781-5.
-
(2007)
Proteins
, vol.69
, pp. 781-785
-
-
Comeau, S.R.1
Kozakov, D.2
Brenke, R.3
Shen, Y.4
Beglov, D.5
-
33
-
-
2642524483
-
A physical reference state unifies the structure-derived potential of mean force for protein folding and binding
-
Liu S, Zhang C, Zhou H, Zhou Y, (2004) A physical reference state unifies the structure-derived potential of mean force for protein folding and binding. Proteins 56: 93-101.
-
(2004)
Proteins
, vol.56
, pp. 93-101
-
-
Liu, S.1
Zhang, C.2
Zhou, H.3
Zhou, Y.4
-
34
-
-
33744956371
-
Use of substrate analogs and mutagenesis to study substrate binding and catalysis in the Sir2 family of NAD-dependent protein deacetylases
-
Khan AN, Lewis PN, (2006) Use of substrate analogs and mutagenesis to study substrate binding and catalysis in the Sir2 family of NAD-dependent protein deacetylases. J Biol Chem 281: 11702-11.
-
(2006)
J Biol Chem
, vol.281
, pp. 11702-11711
-
-
Khan, A.N.1
Lewis, P.N.2
-
35
-
-
0141719702
-
Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan
-
Howitz KT, Bitterman KJ, Cohen HY, Lamming DW, Lavu S, et al.(2003) Small molecule activators of sirtuins extend Saccharomyces cerevisiae lifespan. Nature 425: 191-196.
-
(2003)
Nature
, vol.425
, pp. 191-196
-
-
Howitz, K.T.1
Bitterman, K.J.2
Cohen, H.Y.3
Lamming, D.W.4
Lavu, S.5
-
36
-
-
1542358787
-
Prediction and functional analysis of native disorder in proteins from the three kingdoms of life
-
Ward JJ, Sodhi JS, McGuffin LJ, Buxton BF, Jones DT, (2004) Prediction and functional analysis of native disorder in proteins from the three kingdoms of life. Journal of Molecular Biology 337: 635-645.
-
(2004)
Journal of Molecular Biology
, vol.337
, pp. 635-645
-
-
Ward, J.J.1
Sodhi, J.S.2
McGuffin, L.J.3
Buxton, B.F.4
Jones, D.T.5
-
37
-
-
36749081458
-
Assessment of disorder predictions in CASP7
-
Bordoli L, Kiefer F, Schwede T, (2007) Assessment of disorder predictions in CASP7. Proteins 69S: 129-136.
-
(2007)
Proteins
, vol.69 S
, pp. 129-136
-
-
Bordoli, L.1
Kiefer, F.2
Schwede, T.3
-
38
-
-
14644435825
-
Intrinsically unstructured proteins and their functions
-
Dyson HJ, Wright PE, (2005) Intrinsically unstructured proteins and their functions. Nat Rev Mol Cell Biol 6: 197-208.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 197-208
-
-
Dyson, H.J.1
Wright, P.E.2
-
39
-
-
0035022941
-
Intrinsically disordered protein
-
Dunker AK, Lawson JD, Brown CJ, Williams RM, Romero P, et al.(2001) Intrinsically disordered protein. J Mol Graph Model 19: 26-59.
-
(2001)
J Mol Graph Model
, vol.19
, pp. 26-59
-
-
Dunker, A.K.1
Lawson, J.D.2
Brown, C.J.3
Williams, R.M.4
Romero, P.5
-
40
-
-
0036803243
-
Intrinsically unstructured proteins
-
Tompa P, (2002) Intrinsically unstructured proteins. Trends Biochem Sci 27: 527-533.
-
(2002)
Trends Biochem Sci
, vol.27
, pp. 527-533
-
-
Tompa, P.1
-
41
-
-
33847768609
-
Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions
-
Xie H, Vucetic S, Iakoucheva LM, Oldfield CJ, Dunker AK, et al.(2007) Functional anthology of intrinsic disorder. 1. Biological processes and functions of proteins with long disordered regions. J Proteome Res 6: 1882-1898.
-
(2007)
J Proteome Res
, vol.6
, pp. 1882-1898
-
-
Xie, H.1
Vucetic, S.2
Iakoucheva, L.M.3
Oldfield, C.J.4
Dunker, A.K.5
-
42
-
-
34250365395
-
Nucleocytoplasmic shuttling of the NAD+-dependent histone deacetylase SIRT1
-
Tanno M, Sakamoto J, Miura T, Shimamoto K, Horio Y, (2007) Nucleocytoplasmic shuttling of the NAD+-dependent histone deacetylase SIRT1. J Biol Chem 282: 6823-32.
-
(2007)
J Biol Chem
, vol.282
, pp. 6823-6832
-
-
Tanno, M.1
Sakamoto, J.2
Miura, T.3
Shimamoto, K.4
Horio, Y.5
-
43
-
-
53649100104
-
JNK2-dependent regulation of SIRT1 protein stability
-
Ford J, Ahmed S, Allison S, Jiang M, Milner J, (2008) JNK2-dependent regulation of SIRT1 protein stability Cell Cycle 19: 3091-3097.
-
(2008)
Cell Cycle
, vol.19
, pp. 3091-3097
-
-
Ford, J.1
Ahmed, S.2
Allison, S.3
Jiang, M.4
Milner, J.5
-
44
-
-
4344590155
-
Small molecules that regulate lifespan: evidence for xenohormesis
-
Lamming DW, Wood JG, Sinclair DA, (2004) Small molecules that regulate lifespan: evidence for xenohormesis. Mol Microbiol 53: 1003-9.
-
(2004)
Mol Microbiol
, vol.53
, pp. 1003-1009
-
-
Lamming, D.W.1
Wood, J.G.2
Sinclair, D.A.3
-
45
-
-
2342473198
-
The importance of intrinsic disorder for protein phosphorylation
-
Iakoucheva LM, Radivojac P, Brown CJ, O'Connor TR, Sikes JG, et al.(2004) The importance of intrinsic disorder for protein phosphorylation. Nucleic Acids Res 32: 1037.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1037
-
-
Iakoucheva, L.M.1
Radivojac, P.2
Brown, C.J.3
O'Connor, T.R.4
Sikes, J.G.5
-
46
-
-
33947304756
-
Substrate competition as a source of ultrasensitivity in the inactivation of Wee1
-
Kim SY, Ferrell JE, (2007) Substrate competition as a source of ultrasensitivity in the inactivation of Wee1. Cell 128: 1133.
-
(2007)
Cell
, vol.128
, pp. 1133
-
-
Kim, S.Y.1
Ferrell, J.E.2
-
47
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson T, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.3
-
48
-
-
0027136282
-
Comparative protein modelling by satisfaction of spatial restraints
-
Sali A, Blundell TL, (1993) Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 234: 779-815.
-
(1993)
J Mol Biol
, vol.234
, pp. 779-815
-
-
Sali, A.1
Blundell, T.L.2
-
49
-
-
0000243829
-
PROCHECK: a program to check the stereochemical quality of protein structures
-
Laskowski RA, MacArthur MW, Moss DS, Thornton JM, (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Cryst 26: 283-291.
-
(1993)
J Appl Cryst
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
50
-
-
0020997912
-
Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W, Sander C, (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 2: 2577-2637.
-
(1983)
Biopolymers
, vol.2
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
51
-
-
34248164010
-
Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii
-
Nishimasu H, Fushinobu S, Shoun H, Wakagi T, (2007) Crystal structures of an ATP-dependent hexokinase with broad substrate specificity from the hyperthermophilic archaeon Sulfolobus tokodaii. J Biol Chem 282: 9923-9931.
-
(2007)
J Biol Chem
, vol.282
, pp. 9923-9931
-
-
Nishimasu, H.1
Fushinobu, S.2
Shoun, H.3
Wakagi, T.4
-
52
-
-
34548136236
-
An evaluation of automated homology modelling methods at low target-template sequence similarity
-
Dalton JAR, Jackson RM, (2007) An evaluation of automated homology modelling methods at low target-template sequence similarity. Bioinformatics 23: 1901-1908.
-
(2007)
Bioinformatics
, vol.23
, pp. 1901-1908
-
-
Dalton, J.A.R.1
Jackson, R.M.2
-
53
-
-
0025183708
-
Best local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers E, Lipman DJ, (1990) Best local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.4
Lipman, D.J.5
-
54
-
-
0035967880
-
FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties
-
Shi J, Blundell TL, Mizuguchi K, (2001) FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties. J Mol Biol 310: 243-257.
-
(2001)
J Mol Biol
, vol.310
, pp. 243-257
-
-
Shi, J.1
Blundell, T.L.2
Mizuguchi, K.3
-
55
-
-
0242362161
-
Combining local-structure, fold-recognition, and new fold methods for protein structure prediction
-
Karplus K, Karchin R, Draper J, Casper J, Mandel-Gutfreund Y, et al.(2003) Combining local-structure, fold-recognition, and new fold methods for protein structure prediction. Proteins 6: 491-6.
-
(2003)
Proteins
, vol.6
, pp. 491-496
-
-
Karplus, K.1
Karchin, R.2
Draper, J.3
Casper, J.4
Mandel-Gutfreund, Y.5
-
56
-
-
0037188507
-
Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction
-
Xiang Z, Soto CS, Honig B, (2002) Evaluating conformational free energies: the colony energy and its application to the problem of loop prediction. PNAS 99: 7432-7437.
-
(2002)
PNAS
, vol.99
, pp. 7432-7437
-
-
Xiang, Z.1
Soto, C.S.2
Honig, B.3
-
57
-
-
27344454932
-
GROMACS: fast, flexible, and free
-
Van Der Spoel D Lindahl E, Hess B, Groenhof G, Mark AE, et al.(2005) GROMACS: fast, flexible, and free. J Comput Chem 26: 1701-1718.
-
(2005)
J Comput Chem
, vol.26
, pp. 1701-1718
-
-
van der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
-
58
-
-
34248570351
-
Simulation of conformational changes occurring when a protein interacts with its receptor
-
Costantini S, Colonna G, Facchiano AM, (2007) Simulation of conformational changes occurring when a protein interacts with its receptor. Computational Biology and Chemistry 31: 196-206.
-
(2007)
Computational Biology and Chemistry
, vol.31
, pp. 196-206
-
-
Costantini, S.1
Colonna, G.2
Facchiano, A.M.3
-
59
-
-
56149094423
-
Molecular modelling of co-receptor CD8aa and its complex with MHC class I and T-cell receptor in sea bream (Sparus aurata)
-
Costantini S, Buonocore F, Facchiano AM, (2008) Molecular modelling of co-receptor CD8aa and its complex with MHC class I and T-cell receptor in sea bream (Sparus aurata). Fish Shellfish Immunology 25: 782-90.
-
(2008)
Fish Shellfish Immunology
, vol.25
, pp. 782-790
-
-
Costantini, S.1
Buonocore, F.2
Facchiano, A.M.3
-
60
-
-
0030028728
-
Principals of protein-protein interactions derived from structural studies
-
Jones S, Thornton JM, (1996) Principals of protein-protein interactions derived from structural studies. PNAS 93: 13-20.
-
(1996)
PNAS
, vol.93
, pp. 13-20
-
-
Jones, S.1
Thornton, J.M.2
|