-
1
-
-
0036583926
-
Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics
-
Ong, S. E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A., and Mann, M. (2002) Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Mol. Cell. Proteomics 1, 376-386
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 376-386
-
-
Ong, S.E.1
Blagoev, B.2
Kratchmarova, I.3
Kristensen, D.B.4
Steen, H.5
Pandey, A.6
Mann, M.7
-
2
-
-
0037304325
-
Quantitative proteomics using mass spectrometry
-
Sechi, S., and Oda, Y. (2003) Quantitative proteomics using mass spectrometry. Curr. Opin. Chem. Biol. 7, 70-77
-
(2003)
Curr. Opin. Chem. Biol
, vol.7
, pp. 70-77
-
-
Sechi, S.1
Oda, Y.2
-
3
-
-
0032875697
-
Quantitative analysis of complex protein mixtures using isotope-coded affinity tags
-
Gygi, S. P., Rist, B., Gerber, S. A., Turecek, F., Gelb, M. H., and Aebersold, R. (1999) Quantitative analysis of complex protein mixtures using isotope-coded affinity tags. Nat. Biotechnol. 17, 994-999
-
(1999)
Nat. Biotechnol
, vol.17
, pp. 994-999
-
-
Gygi, S.P.1
Rist, B.2
Gerber, S.A.3
Turecek, F.4
Gelb, M.H.5
Aebersold, R.6
-
4
-
-
0036171359
-
De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging
-
Cagney, G., and Emili, A. (2002) De novo peptide sequencing and quantitative profiling of complex protein mixtures using mass-coded abundance tagging. Nat. Biotechnol. 20, 163-170
-
(2002)
Nat. Biotechnol
, vol.20
, pp. 163-170
-
-
Cagney, G.1
Emili, A.2
-
5
-
-
23944472666
-
Comprehensive label-free method for the relative quantification of proteins from biological samples
-
Higgs, R. E., Knierman, M. D., Gelfanova, V., Butler, J. P., and Hale, J. E. (2005) Comprehensive label-free method for the relative quantification of proteins from biological samples. J. Proteome Res. 4, 1442-1450
-
(2005)
J. Proteome Res
, vol.4
, pp. 1442-1450
-
-
Higgs, R.E.1
Knierman, M.D.2
Gelfanova, V.3
Butler, J.P.4
Hale, J.E.5
-
6
-
-
0037795741
-
Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS
-
Gerber, S. A., Rush, J., Stemman, O., Kirschner, M. W., and Gygi, S. P. (2003) Absolute quantification of proteins and phosphoproteins from cell lysates by tandem MS. Proc. Natl. Acad. Sci. U. S. A. 100, 6940-6945
-
(2003)
Proc. Natl. Acad. Sci. U. S. A
, vol.100
, pp. 6940-6945
-
-
Gerber, S.A.1
Rush, J.2
Stemman, O.3
Kirschner, M.W.4
Gygi, S.P.5
-
8
-
-
22844436250
-
Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards
-
Ishihama, Y., Sato, T., Tabata, T., Miyamoto, N., Sagane, K., Nagasu, T., and Oda, Y. (2005) Quantitative mouse brain proteomics using culture-derived isotope tags as internal standards. Nat. Biotechnol. 23, 617-621
-
(2005)
Nat. Biotechnol
, vol.23
, pp. 617-621
-
-
Ishihama, Y.1
Sato, T.2
Tabata, T.3
Miyamoto, N.4
Sagane, K.5
Nagasu, T.6
Oda, Y.7
-
9
-
-
13444260275
-
The absolute quantification strategy: A general procedure for the quantification of proteins and post-translational modifications
-
Kirkpatrick, D. S., Gerber, S. A., and Gygi, S. P. (2005) The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications. Methods (Duluth) 35, 265-273
-
(2005)
Methods (Duluth)
, vol.35
, pp. 265-273
-
-
Kirkpatrick, D.S.1
Gerber, S.A.2
Gygi, S.P.3
-
10
-
-
14944367554
-
High throughput proteome screening for biomarker detection
-
Pan, S., Zhang, H., Rush, J., Eng, J., Zhang, N., Patterson, D., Comb, M. J., and Aebersold, R. (2005) High throughput proteome screening for biomarker detection. Mol. Cell. Proteomics 4, 182-190
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 182-190
-
-
Pan, S.1
Zhang, H.2
Rush, J.3
Eng, J.4
Zhang, N.5
Patterson, D.6
Comb, M.J.7
Aebersold, R.8
-
11
-
-
23144442824
-
Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides
-
Beynon, R. J., Doherty, M. K., Pratt, J. M., and Gaskell, S. J. (2005) Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides. Nat. Methods 2, 587-589
-
(2005)
Nat. Methods
, vol.2
, pp. 587-589
-
-
Beynon, R.J.1
Doherty, M.K.2
Pratt, J.M.3
Gaskell, S.J.4
-
12
-
-
33847179916
-
Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes
-
Pratt, J. M., Simpson, D. M., Doherty, M. K., J., R., Gaskell, S. J., and Beynon, R. J. (2006) Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes. Nat. Protocols 1, 1029-1043
-
(2006)
Nat. Protocols
, vol.1
, pp. 1029-1043
-
-
Pratt, J.M.1
Simpson, D.M.2
Doherty, M.K.J.R.3
Gaskell, S.J.4
Beynon, R.J.5
-
13
-
-
33847416604
-
A synthetic protein approach toward accurate mass spectrometric quantification of component stoichiometry of multiprotein complexes
-
Kito, K., Ota, K., Fujita, T., and Ito, T. (2007) A synthetic protein approach toward accurate mass spectrometric quantification of component stoichiometry of multiprotein complexes. J. Proteome Res. 6, 792-800
-
(2007)
J. Proteome Res
, vol.6
, pp. 792-800
-
-
Kito, K.1
Ota, K.2
Fujita, T.3
Ito, T.4
-
14
-
-
0002635460
-
Proteolysis of native proteins as a structural probe
-
Beynon, R. J, and Bond, J. S, eds pp, Oxford University Press, Oxford
-
Hubbard, S. J., and Beynon, R. J. (2001) Proteolysis of native proteins as a structural probe, in Proteolytic Enzymes. A Practical Approach (Beynon, R. J., and Bond, J. S., eds) pp. 233-264, Oxford University Press, Oxford
-
(2001)
Proteolytic Enzymes. A Practical Approach
, pp. 233-264
-
-
Hubbard, S.J.1
Beynon, R.J.2
-
15
-
-
0032539578
-
The structural aspects of limited proteolysis of native proteins
-
Hubbard, S. J. (1998) The structural aspects of limited proteolysis of native proteins. Biochim. Biophys. Acta 1382, 191-206
-
(1998)
Biochim. Biophys. Acta
, vol.1382
, pp. 191-206
-
-
Hubbard, S.J.1
-
16
-
-
0029921147
-
Probing the tertiary structure of proteins by limited proteolysis and mass spectrometry: The case of Minibody
-
Zappacosta, F., Pessi, A., Bianchi, E., Venturini, S., Sollazzo, M., Tramontano, A., Marino, G., and Pucci, P. (1996) Probing the tertiary structure of proteins by limited proteolysis and mass spectrometry: the case of Minibody. Protein Sci. 5, 802-813
-
(1996)
Protein Sci
, vol.5
, pp. 802-813
-
-
Zappacosta, F.1
Pessi, A.2
Bianchi, E.3
Venturini, S.4
Sollazzo, M.5
Tramontano, A.6
Marino, G.7
Pucci, P.8
-
17
-
-
0031812617
-
Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures
-
Hubbard, S. J., Beynon, R. J., and Thornton, J. M. (1998) Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures. Protein Eng. 11, 349-359
-
(1998)
Protein Eng
, vol.11
, pp. 349-359
-
-
Hubbard, S.J.1
Beynon, R.J.2
Thornton, J.M.3
-
18
-
-
0033534621
-
Proteolysis of native proteins. Trapping of a reaction intermediate
-
Wu, C., Robertson, D. H., Hubbard, S. J., Gaskell, S. J., and Beynon, R. J. (1999) Proteolysis of native proteins. Trapping of a reaction intermediate. J. Biol. Chem. 274, 1108-1115
-
(1999)
J. Biol. Chem
, vol.274
, pp. 1108-1115
-
-
Wu, C.1
Robertson, D.H.2
Hubbard, S.J.3
Gaskell, S.J.4
Beynon, R.J.5
-
19
-
-
0033783397
-
Improved matrix-assisted laser desorption/ionization mass spectrometric analysis of tryptic hydrolysates of proteins following guanidination of lysine-containing peptides
-
Brancia, F. L., Oliver, S. G., and Gaskell, S. J. (2000) Improved matrix-assisted laser desorption/ionization mass spectrometric analysis of tryptic hydrolysates of proteins following guanidination of lysine-containing peptides. Rapid Commun. Mass Spectrom. 14, 2070 -2073
-
(2000)
Rapid Commun. Mass Spectrom
, vol.14
, pp. 2070-2073
-
-
Brancia, F.L.1
Oliver, S.G.2
Gaskell, S.J.3
-
20
-
-
0034544548
-
Increased sensitivity of tryptic peptide detection by MALDI-TOF mass spectrometry is achieved by conversion of lysine to homoarginine
-
Hale, J. E., Butler, J. P., Knierman, M. D., and Becker, G. W. (2000) Increased sensitivity of tryptic peptide detection by MALDI-TOF mass spectrometry is achieved by conversion of lysine to homoarginine. Anal. Biochem. 287, 110-117
-
(2000)
Anal. Biochem
, vol.287
, pp. 110-117
-
-
Hale, J.E.1
Butler, J.P.2
Knierman, M.D.3
Becker, G.W.4
-
21
-
-
2642568030
-
The proteome of chicken skeletal muscle: Changes in soluble protein expression during growth in a layer strain
-
Doherty, M. K., McLean, L., Hayter, J. R., Pratt, J. M., Robertson, D. H., EI-Shafei, A., Gaskell, S. J., and Beynon, R. J. (2004) The proteome of chicken skeletal muscle: changes in soluble protein expression during growth in a layer strain. Proteomics 4, 2082-2093
-
(2004)
Proteomics
, vol.4
, pp. 2082-2093
-
-
Doherty, M.K.1
McLean, L.2
Hayter, J.R.3
Pratt, J.M.4
Robertson, D.H.5
EI-Shafei, A.6
Gaskell, S.J.7
Beynon, R.J.8
-
22
-
-
2642550627
-
A proteome analysis of the subcutaneous gel in avian hatchlings
-
McLean, L., Doherty, M. K., Deeming, D. C., and Beynon, R. J. (2004) A proteome analysis of the subcutaneous gel in avian hatchlings. Mol. Cell. Proteomics 3, 250-256
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 250-256
-
-
McLean, L.1
Doherty, M.K.2
Deeming, D.C.3
Beynon, R.J.4
-
23
-
-
1942470508
-
The contributions of specific amino acid side chains to signal intensities of peptides in matrix-assisted laser desorption/ ionization mass spectrometry
-
Baumgart, S., Lindner, Y., Kuhne, R., Oberemm, A., Wenschuh, H., and Krause, E. (2004) The contributions of specific amino acid side chains to signal intensities of peptides in matrix-assisted laser desorption/ ionization mass spectrometry. Rapid Commun. Mass Spectrom. 18, 863-868
-
(2004)
Rapid Commun. Mass Spectrom
, vol.18
, pp. 863-868
-
-
Baumgart, S.1
Lindner, Y.2
Kuhne, R.3
Oberemm, A.4
Wenschuh, H.5
Krause, E.6
-
24
-
-
0033214277
-
The dominance of arginine-containing peptides in MALDI-derived tryptic mass fingerprints of proteins
-
Krause, E., Wenschuh, H., and Jungblut, P. R. (1999) The dominance of arginine-containing peptides in MALDI-derived tryptic mass fingerprints of proteins. Anal. Chem. 71, 4160-4165
-
(1999)
Anal. Chem
, vol.71
, pp. 4160-4165
-
-
Krause, E.1
Wenschuh, H.2
Jungblut, P.R.3
-
25
-
-
13844315284
-
Nanoflow liquid chromatography coupled to matrix-assisted laser desorption/ionization mass spectrometry: Sample preparation, data analysis, and application to the analysis of complex peptide mixtures
-
Mirgorodskaya, E., Braeuer, C., Fucini, P., Lehrach, H., and Gobom, J. (2005) Nanoflow liquid chromatography coupled to matrix-assisted laser desorption/ionization mass spectrometry: sample preparation, data analysis, and application to the analysis of complex peptide mixtures. Proteomics 5, 399-408
-
(2005)
Proteomics
, vol.5
, pp. 399-408
-
-
Mirgorodskaya, E.1
Braeuer, C.2
Fucini, P.3
Lehrach, H.4
Gobom, J.5
-
26
-
-
33846133955
-
Computational prediction of proteotypic peptides for quantitative proteomics
-
Mallick, P., Schirle, M., Chen, S. S., Flory, M. R., Lee, H., Martin, D., Ranish, J., Raught, B., Schmitt, R., Wenner, T., Kuster, B., and Aebersold, R. (2007) Computational prediction of proteotypic peptides for quantitative proteomics. Nat. Biotechnol. 25, 125-131
-
(2007)
Nat. Biotechnol
, vol.25
, pp. 125-131
-
-
Mallick, P.1
Schirle, M.2
Chen, S.S.3
Flory, M.R.4
Lee, H.5
Martin, D.6
Ranish, J.7
Raught, B.8
Schmitt, R.9
Wenner, T.10
Kuster, B.11
Aebersold, R.12
|