-
1
-
-
0002676017
-
Lazy learning: special issue editorial
-
Lazy learning: special issue editorial. Artif. Intell. Rev. 1997, 7-10.
-
(1997)
Artif. Intell. Rev.
, pp. 7-10
-
-
-
3
-
-
0033954256
-
The protein data bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., Bourne P.E. The protein data bank. Nucleic Acids Res. 2000, 28:235-242.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
4
-
-
85004911383
-
Positional flexibilities of amino acid residues in globular proteins
-
Bhaskaran P., Ponnuswamy P.K. Positional flexibilities of amino acid residues in globular proteins. Int. J. Peptide Protein Res. 1988, 32:241-255.
-
(1988)
Int. J. Peptide Protein Res.
, vol.32
, pp. 241-255
-
-
Bhaskaran, P.1
Ponnuswamy, P.K.2
-
6
-
-
0035023445
-
Predicting protein-protein interactions from primary structure
-
Bock J.R., Gough D.A. Predicting protein-protein interactions from primary structure. Bioinformatics 2001, 17:455-460.
-
(2001)
Bioinformatics
, vol.17
, pp. 455-460
-
-
Bock, J.R.1
Gough, D.A.2
-
7
-
-
0021349111
-
Molecular structures: perception, autocorrelation descriptor and SAR studies
-
Broto P., Moreau G., Vandicke C. Molecular structures: perception, autocorrelation descriptor and SAR studies. Eur. J. Med. Chem. 1984, 19:71-78.
-
(1984)
Eur. J. Med. Chem.
, vol.19
, pp. 71-78
-
-
Broto, P.1
Moreau, G.2
Vandicke, C.3
-
8
-
-
34250845013
-
Proteometric study of ghrelin receptor function variations upon mutations using amino acid sequence autocorrelation vectors and genetic algorithm-based least square support vector machines
-
Caballero J., Fernández L., Garriga M., Abreu J.I., Collina S., Fernández M. Proteometric study of ghrelin receptor function variations upon mutations using amino acid sequence autocorrelation vectors and genetic algorithm-based least square support vector machines. J. Mol. Graph. Model. 2007, 26:166-178.
-
(2007)
J. Mol. Graph. Model.
, vol.26
, pp. 166-178
-
-
Caballero, J.1
Fernández, L.2
Garriga, M.3
Abreu, J.I.4
Collina, S.5
Fernández, M.6
-
9
-
-
33846630833
-
SODOCK: swarm optimization for highly flexible protein-ligand docking
-
Chen H.M., Liu B.F., Huang H.L., Hwang S.E., Ho S.I. SODOCK: swarm optimization for highly flexible protein-ligand docking. J. Comput. Chem. 2007, 28:612-623.
-
(2007)
J. Comput. Chem.
, vol.28
, pp. 612-623
-
-
Chen, H.M.1
Liu, B.F.2
Huang, H.L.3
Hwang, S.E.4
Ho, S.I.5
-
10
-
-
0034687538
-
Prediction of protein subcellular locations by incorporating quasi-sequence-order effect
-
Chou K.C. Prediction of protein subcellular locations by incorporating quasi-sequence-order effect. Biochem. Biophys. Res. Commun. 2000, 278:477-483.
-
(2000)
Biochem. Biophys. Res. Commun.
, vol.278
, pp. 477-483
-
-
Chou, K.C.1
-
11
-
-
0035874091
-
Prediction of protein cellular attributes using pseudo-amino acid composition
-
Chou K.C. Prediction of protein cellular attributes using pseudo-amino acid composition. Proteins 2001, 43:246-255.
-
(2001)
Proteins
, vol.43
, pp. 246-255
-
-
Chou, K.C.1
-
12
-
-
12744279642
-
Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
-
Chou K.C. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes. Bioinformatics 2005, 21:10-19.
-
(2005)
Bioinformatics
, vol.21
, pp. 10-19
-
-
Chou, K.C.1
-
13
-
-
18344391868
-
Prediction of membrane protein types by incorporating amphipathic effects
-
Chou K.C., Cai Y.D. Prediction of membrane protein types by incorporating amphipathic effects. J. Chem. Inf. Model. 2005, 45:407-413.
-
(2005)
J. Chem. Inf. Model.
, vol.45
, pp. 407-413
-
-
Chou, K.C.1
Cai, Y.D.2
-
14
-
-
45549110576
-
Regression by local fitting: methods, properties, and computational algorithms
-
Cleveland W.S., Devlin S.J., Grosse E. Regression by local fitting: methods, properties, and computational algorithms. J Econometrics 1988, 37:87-114.
-
(1988)
J Econometrics
, vol.37
, pp. 87-114
-
-
Cleveland, W.S.1
Devlin, S.J.2
Grosse, E.3
-
15
-
-
0023972269
-
Prediction of protein helix content from an autocorrelation analysis of sequence hydrophobicities
-
David S.H. Prediction of protein helix content from an autocorrelation analysis of sequence hydrophobicities. Biopolymers 1988, 27:451-477.
-
(1988)
Biopolymers
, vol.27
, pp. 451-477
-
-
David, S.H.1
-
16
-
-
0033521194
-
First principles prediction of protein folding rates
-
Debe D.A., Goddard W.A. First principles prediction of protein folding rates. J. Mol. Biol. 1999, 294:619-625.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 619-625
-
-
Debe, D.A.1
Goddard, W.A.2
-
17
-
-
0035173844
-
The roles of stability and contact order in determining protein folding rates
-
Dinner A.R., Karplus M. The roles of stability and contact order in determining protein folding rates. Nat. Struct. Biol. 2001, 8:21-22.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 21-22
-
-
Dinner, A.R.1
Karplus, M.2
-
18
-
-
0037173002
-
Topological determinants of protein folding
-
Dokholyan N.V., Li L., Feng D., Shakhnovich E.I. Topological determinants of protein folding. Proc. Natl. Acad. Sci. USA 2002, 99:8637-8641.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 8637-8641
-
-
Dokholyan, N.V.1
Li, L.2
Feng, D.3
Shakhnovich, E.I.4
-
19
-
-
3343000049
-
Methods to study protein folding by stopped-flow FT-IR
-
Fabian H., Naumann D. Methods to study protein folding by stopped-flow FT-IR. Methods 2004, 34:28-40.
-
(2004)
Methods
, vol.34
, pp. 28-40
-
-
Fabian, H.1
Naumann, D.2
-
21
-
-
0038440629
-
A measure of conformational entropy change during thermal protein unfolding using neutron spectroscopy
-
Fitter J. A measure of conformational entropy change during thermal protein unfolding using neutron spectroscopy. Biophys. J. 2003, 84:3924-3930.
-
(2003)
Biophys. J.
, vol.84
, pp. 3924-3930
-
-
Fitter, J.1
-
22
-
-
0037402639
-
Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics
-
Galzitskaya O.V., Garbuzynskiy S.O., Ivankov D.N., Finkelstein A.V. Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics. Proteins 2003, 51:162-166.
-
(2003)
Proteins
, vol.51
, pp. 162-166
-
-
Galzitskaya, O.V.1
Garbuzynskiy, S.O.2
Ivankov, D.N.3
Finkelstein, A.V.4
-
23
-
-
0037432567
-
Local secondary structure content predicts folding rates for simple, two-state proteins
-
Gong H., Isom D.G., Srinivasan R., Rose G.D. Local secondary structure content predicts folding rates for simple, two-state proteins. J. Mol. Biol. 2003, 327:1149-1154.
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 1149-1154
-
-
Gong, H.1
Isom, D.G.2
Srinivasan, R.3
Rose, G.D.4
-
24
-
-
0037432567
-
Local secondary structure content predicts folding rates for simple, two-state proteins
-
Gong H., Isom D.G., Srinivasan R., Rose G.D. Local secondary structure content predicts folding rates for simple, two-state proteins. J. Mol. Biol. 2003, 327:1149-1154.
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 1149-1154
-
-
Gong, H.1
Isom, D.G.2
Srinivasan, R.3
Rose, G.D.4
-
25
-
-
0141959709
-
Importance of native-state topology for determining the folding rate of two-state proteins
-
Gromiha M.M. Importance of native-state topology for determining the folding rate of two-state proteins. J. Chem. Inf. Comput. Sci. 2003, 43:1481-1485.
-
(2003)
J. Chem. Inf. Comput. Sci.
, vol.43
, pp. 1481-1485
-
-
Gromiha, M.M.1
-
26
-
-
18344371857
-
A statistical model for predicting protein folding rates from amino acid sequence with structural class information
-
Gromiha M.M. A statistical model for predicting protein folding rates from amino acid sequence with structural class information. J. Chem. Inf. Model. 2005, 45:494-501.
-
(2005)
J. Chem. Inf. Model.
, vol.45
, pp. 494-501
-
-
Gromiha, M.M.1
-
27
-
-
66149112049
-
Multiple contact network is a key determinant to protein folding rates
-
Gromiha M.M. Multiple contact network is a key determinant to protein folding rates. J. Chem. Inf. Model. 2009, 49:1130-1135.
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 1130-1135
-
-
Gromiha, M.M.1
-
28
-
-
0035967862
-
Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: application of long-range order to folding rate prediction
-
Gromiha M.M., Selvaraj S. Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: application of long-range order to folding rate prediction. J. Mol. Biol. 2001, 310:27-32.
-
(2001)
J. Mol. Biol.
, vol.310
, pp. 27-32
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
29
-
-
1842464687
-
Inter-residue interactions in protein folding and stability
-
Gromiha M.M., Selvaraj S. Inter-residue interactions in protein folding and stability. Prog. Biophys. Mol. Biol. 2004, 86:235-277.
-
(2004)
Prog. Biophys. Mol. Biol.
, vol.86
, pp. 235-277
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
30
-
-
38949121906
-
Bioinformatics approaches for understanding and predicting protein folding rates
-
Gromiha M.M., Selvaraj S. Bioinformatics approaches for understanding and predicting protein folding rates. Curr. Bioinformatics 2008, 3:1-9.
-
(2008)
Curr. Bioinformatics
, vol.3
, pp. 1-9
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
31
-
-
33747822326
-
FOLD-RATE: prediction of protein folding rates from amino acid sequence
-
Gromiha M.M., Thangakani A.M., Selvaraj S. FOLD-RATE: prediction of protein folding rates from amino acid sequence. Nucleic Acids Res. 2006, 34:W70-W74.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Gromiha, M.M.1
Thangakani, A.M.2
Selvaraj, S.3
-
32
-
-
28544451206
-
Analysis of peptide-protein binding using amino acid descriptors: prediction and experimental verification for human histocompatibility complex HLA-A*0201
-
Guan P., Doytchinova I.A., Walshe V.A., Borrow P., Flower D.R. Analysis of peptide-protein binding using amino acid descriptors: prediction and experimental verification for human histocompatibility complex HLA-A*0201. J. Med. Chem. 2005, 48:7418-7425.
-
(2005)
J. Med. Chem.
, vol.48
, pp. 7418-7425
-
-
Guan, P.1
Doytchinova, I.A.2
Walshe, V.A.3
Borrow, P.4
Flower, D.R.5
-
33
-
-
33746928751
-
Local lazy regression: making use of the neighborhood to improve QSAR predictions
-
Guha R., Dutta D., Jurs P.C., Chen T. Local lazy regression: making use of the neighborhood to improve QSAR predictions. J. Chem. Inf. Model. 2006, 46:1836-1847.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 1836-1847
-
-
Guha, R.1
Dutta, D.2
Jurs, P.C.3
Chen, T.4
-
34
-
-
33947600314
-
Support vector machines approach for predicting druggable proteins: recent progress in its exploration and investigation of its usefulness
-
Han L.Y., Zheng C.J., Xie B., Jia J., Ma X.H., Zhu F., Lin H.H., Chen X., Chen Y.Z. Support vector machines approach for predicting druggable proteins: recent progress in its exploration and investigation of its usefulness. Drug Discov. Today 2007, 12:304-313.
-
(2007)
Drug Discov. Today
, vol.12
, pp. 304-313
-
-
Han, L.Y.1
Zheng, C.J.2
Xie, B.3
Jia, J.4
Ma, X.H.5
Zhu, F.6
Lin, H.H.7
Chen, X.8
Chen, Y.Z.9
-
35
-
-
37649004604
-
Application of quantum topological molecular similarity descriptors in QSPR study of the O-methylation of substituted phenols
-
Hemmateenejad B., Mohajeri A. Application of quantum topological molecular similarity descriptors in QSPR study of the O-methylation of substituted phenols. J. Comput. Chem. 2008, 29:266-274.
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 266-274
-
-
Hemmateenejad, B.1
Mohajeri, A.2
-
36
-
-
0033191625
-
Applications of genetic algorithms on the structure-activity relationship analysis of some cinnamamides
-
Hou T.J., Wang J.M., Liao N., Xu X.J. Applications of genetic algorithms on the structure-activity relationship analysis of some cinnamamides. J. Chem. Inf. Comput. Sci. 1999, 39:775-781.
-
(1999)
J. Chem. Inf. Comput. Sci.
, vol.39
, pp. 775-781
-
-
Hou, T.J.1
Wang, J.M.2
Liao, N.3
Xu, X.J.4
-
37
-
-
77952957389
-
-
.
-
-
-
-
38
-
-
33646028225
-
Amino acid sequence predicts folding rate for middle-size two-state proteins
-
Huang J.T., Tian J. Amino acid sequence predicts folding rate for middle-size two-state proteins. Proteins 2006, 63:551-554.
-
(2006)
Proteins
, vol.63
, pp. 551-554
-
-
Huang, J.T.1
Tian, J.2
-
39
-
-
46449092464
-
Analysis and prediction of protein folding rates using quadratic response surface models
-
Huang L.T., Gromiha M.M. Analysis and prediction of protein folding rates using quadratic response surface models. J. Comput. Chem. 2008, 29:1675-1683.
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 1675-1683
-
-
Huang, L.T.1
Gromiha, M.M.2
-
40
-
-
35648931551
-
On the role of structural class of a protein with two-state folding kinetics in determining correlations between its size, topology, and folding rate
-
Istomin A.Y., Jacobs D.J., Livesay D.R. On the role of structural class of a protein with two-state folding kinetics in determining correlations between its size, topology, and folding rate. Protein Sci. 2007, 16:2564-2569.
-
(2007)
Protein Sci.
, vol.16
, pp. 2564-2569
-
-
Istomin, A.Y.1
Jacobs, D.J.2
Livesay, D.R.3
-
41
-
-
2942689229
-
Prediction of protein folding rates from the amino acid sequence-predicted secondary structure
-
Ivankov D.N., Finkelstein A.V. Prediction of protein folding rates from the amino acid sequence-predicted secondary structure. Proc. Natl. Acad. Sci. USA 2004, 101:8942-8944.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 8942-8944
-
-
Ivankov, D.N.1
Finkelstein, A.V.2
-
42
-
-
0042510944
-
Contact order revisited: Influence of protein size on the folding rate
-
Ivankov D.N., Garbuzynskiy S.O., Alm E., Plaxco K.W., Baker D., Finkelstein A.V. Contact order revisited: Influence of protein size on the folding rate. Protein Sci. 2003, 12:2057-2062.
-
(2003)
Protein Sci.
, vol.12
, pp. 2057-2062
-
-
Ivankov, D.N.1
Garbuzynskiy, S.O.2
Alm, E.3
Plaxco, K.W.4
Baker, D.5
Finkelstein, A.V.6
-
43
-
-
33847367710
-
Secondary structure length as a determinant of folding rate of proteins with two- and three-state kinetics
-
Huang J.T., Cheng J.P., Chen H. Secondary structure length as a determinant of folding rate of proteins with two- and three-state kinetics. Proteins: Struct. Funct. Bioinformatics 2007, 67:12-17.
-
(2007)
Proteins: Struct. Funct. Bioinformatics
, vol.67
, pp. 12-17
-
-
Huang, J.T.1
Cheng, J.P.2
Chen, H.3
-
44
-
-
64549141572
-
Prediction of protein folding rates from primary sequences using hybrid sequence representation
-
Jiang Y.F., Iglinski P., Kurgan L. Prediction of protein folding rates from primary sequences using hybrid sequence representation. J. Comput. Chem. 2009, 30:772-783.
-
(2009)
J. Comput. Chem.
, vol.30
, pp. 772-783
-
-
Jiang, Y.F.1
Iglinski, P.2
Kurgan, L.3
-
45
-
-
56949090293
-
QSAR study of malonyl-CoA decarboxylase inhibitors using GA-MLR and a new strategy of consensus modeling
-
Li J.Z., Lei B.L., Liu H.X., Li S.Y., Yao X.J., Liu M.C., Gramatica P. QSAR study of malonyl-CoA decarboxylase inhibitors using GA-MLR and a new strategy of consensus modeling. J. Comput. Chem. 2008, 29:2636-2647.
-
(2008)
J. Comput. Chem.
, vol.29
, pp. 2636-2647
-
-
Li, J.Z.1
Lei, B.L.2
Liu, H.X.3
Li, S.Y.4
Yao, X.J.5
Liu, M.C.6
Gramatica, P.7
-
46
-
-
33747816816
-
PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence
-
Li Z.R., Lin H.H., Han L.Y., Jiang L., Chen X., Chen Y.Z. PROFEAT: a web server for computing structural and physicochemical features of proteins and peptides from amino acid sequence. Nucleic Acids Res. 2006, 34:W32-W37.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Li, Z.R.1
Lin, H.H.2
Han, L.Y.3
Jiang, L.4
Chen, X.5
Chen, Y.Z.6
-
47
-
-
0034874330
-
Accurate prediction of protein secondary structural content
-
Lin Z., Pan X.M. Accurate prediction of protein secondary structural content. J. Protein Chem. 2001, 20:217-220.
-
(2001)
J. Protein Chem.
, vol.20
, pp. 217-220
-
-
Lin, Z.1
Pan, X.M.2
-
48
-
-
33845277149
-
QSAR prediction of estrogen activity for a large set of diverse chemicals under the guidance of OECD principles
-
Liu H.X., Papa E., Gramatica P. QSAR prediction of estrogen activity for a large set of diverse chemicals under the guidance of OECD principles. Chem. Res. Toxicol. 2006, 19:1540-1548.
-
(2006)
Chem. Res. Toxicol.
, vol.19
, pp. 1540-1548
-
-
Liu, H.X.1
Papa, E.2
Gramatica, P.3
-
49
-
-
33749035288
-
Direct correlation between proteins' folding rates and their amino acid compositions: an ab initio folding rate prediction
-
Ma B.G., Guo J.X., Zhang H.Y. Direct correlation between proteins' folding rates and their amino acid compositions: an ab initio folding rate prediction. Proteins 2006, 65:362-372.
-
(2006)
Proteins
, vol.65
, pp. 362-372
-
-
Ma, B.G.1
Guo, J.X.2
Zhang, H.Y.3
-
50
-
-
16344382372
-
Protein folding: the stepwise assembly of foldon units
-
Maity H., Maity M., Krishna M.M.G., Mayne L., Englander S.W. Protein folding: the stepwise assembly of foldon units. Proc. Natl. Acad. Sci. USA 2005, 102:4741-4746.
-
(2005)
Proc. Natl. Acad. Sci. USA
, vol.102
, pp. 4741-4746
-
-
Maity, H.1
Maity, M.2
Krishna, M.M.G.3
Mayne, L.4
Englander, S.W.5
-
51
-
-
0037133574
-
How the folding rate constant of simple, single-domain proteins depends on the number of native contacts
-
Makarov D.E., Keller C.A., Plaxco K.W., Metiu H. How the folding rate constant of simple, single-domain proteins depends on the number of native contacts. Proc. Natl. Acad. Sci. USA 2002, 99:3535-3539.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 3535-3539
-
-
Makarov, D.E.1
Keller, C.A.2
Plaxco, K.W.3
Metiu, H.4
-
52
-
-
20044363782
-
Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins
-
Maxwell K.L., Wildes D., Zarrine-Afsar A., De Los Rios M.A., Brown A.G., Friel C.T., Hedberg L., Horng J.C., Bona D., Miller E.J., Vallee-Belisle A., Main E.R.G., Bemporad F., Qiu L., Teilum K., Vu N.D., Edwards A.M., Ruczinski I., Poulsen F.M., Kragelund B.B., Michnick S.W., Chiti F., Bai Y., Hagen S.J., Serrano L., Oliveberg M., Raleigh D.P., Wittung-Stafshede P., Radford S.E., Jackson S.E., Sosnick T.R., Marqusee S., Davidson A.R., Plaxco K.W. Protein folding: defining a "standard" set of experimental conditions and a preliminary kinetic data set of two-state proteins. Protein Sci. 2005, 14:602-661.
-
(2005)
Protein Sci.
, vol.14
, pp. 602-661
-
-
Maxwell, K.L.1
Wildes, D.2
Zarrine-Afsar, A.3
De Los Rios, M.A.4
Brown, A.G.5
Friel, C.T.6
Hedberg, L.7
Horng, J.C.8
Bona, D.9
Miller, E.J.10
Vallee-Belisle, A.11
Main, E.R.G.12
Bemporad, F.13
Qiu, L.14
Teilum, K.15
Vu, N.D.16
Edwards, A.M.17
Ruczinski, I.18
Poulsen, F.M.19
Kragelund, B.B.20
Michnick, S.W.21
Chiti, F.22
Bai, Y.23
Hagen, S.J.24
Serrano, L.25
Oliveberg, M.26
Raleigh, D.P.27
Wittung-Stafshede, P.28
Radford, S.E.29
Jackson, S.E.30
Sosnick, T.R.31
Marqusee, S.32
Davidson, A.R.33
Plaxco, K.W.34
more..
-
53
-
-
0036678120
-
Experimental evaluation of topological parameters determining protein-folding rates
-
Miller E.J., Fischer K.F., Marqusee S. Experimental evaluation of topological parameters determining protein-folding rates. Proc. Natl. Acad. Sci. USA 2002, 99:10359-10363.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 10359-10363
-
-
Miller, E.J.1
Fischer, K.F.2
Marqusee, S.3
-
54
-
-
0001057103
-
Autocorrelation of a topological structure: a new molecular descriptor
-
Moreau G., Broto P. Autocorrelation of a topological structure: a new molecular descriptor. Nouv. J. Chim. 1980, 4:359-360.
-
(1980)
Nouv. J. Chim.
, vol.4
, pp. 359-360
-
-
Moreau, G.1
Broto, P.2
-
55
-
-
0033613165
-
A simple model for calculating the kinetics of protein folding from three-dimensional structures
-
Muñoz V., Eaton W.A. A simple model for calculating the kinetics of protein folding from three-dimensional structures. Proc. Natl. Acad. Sci. USA 1999, 96:11311-11316.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 11311-11316
-
-
Muñoz, V.1
Eaton, W.A.2
-
56
-
-
12944309313
-
Scaling of folding times with protein size
-
Naganathan A.N., Munoz V. Scaling of folding times with protein size. J. Am. Chem. Soc. 2005, 127:480-481.
-
(2005)
J. Am. Chem. Soc.
, vol.127
, pp. 480-481
-
-
Naganathan, A.N.1
Munoz, V.2
-
57
-
-
1042265247
-
Approaches to measure chemical similarity-a review
-
Nikolova N., Jaworska J. Approaches to measure chemical similarity-a review. QSAR Comb. Sci. 2003, 22:1006-1026.
-
(2003)
QSAR Comb. Sci.
, vol.22
, pp. 1006-1026
-
-
Nikolova, N.1
Jaworska, J.2
-
58
-
-
0038693127
-
Structural determinants of the rate of protein folding
-
Nölting B., Schälike W., Hampel P., Grundig F., Gantert S., Sips N., Bandlow W., Qi P.X. Structural determinants of the rate of protein folding. J. Theor. Biol. 2003, 223:299-307.
-
(2003)
J. Theor. Biol.
, vol.223
, pp. 299-307
-
-
Nölting, B.1
Schälike, W.2
Hampel, P.3
Grundig, F.4
Gantert, S.5
Sips, N.6
Bandlow, W.7
Qi, P.X.8
-
59
-
-
46449120907
-
Predicting protein folding rates from geometric contact and amino acid sequence
-
Ouyang Z., Liang J. Predicting protein folding rates from geometric contact and amino acid sequence. Protein Sci. 2008, 17:1256-1263.
-
(2008)
Protein Sci.
, vol.17
, pp. 1256-1263
-
-
Ouyang, Z.1
Liang, J.2
-
60
-
-
33847110311
-
Lazy learning-based online identification and adaptive PID control: a case study for CSTR process
-
Pan T., Li S., Cai W.J. Lazy learning-based online identification and adaptive PID control: a case study for CSTR process. Ind. Eng. Chem. Res. 2007, 46:472-480.
-
(2007)
Ind. Eng. Chem. Res.
, vol.46
, pp. 472-480
-
-
Pan, T.1
Li, S.2
Cai, W.J.3
-
61
-
-
0032502839
-
Contact order, transition state placement and the refolding rates of single domain proteins
-
Plaxco K.W., Simons K.T., Baker D. Contact order, transition state placement and the refolding rates of single domain proteins. J. Mol. Biol. 1998, 277:985-994.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
62
-
-
33645240906
-
Prediction of folding rates of small proteins: empirical relations based on length, secondary structure content, residue type, and stability
-
Prabhu N.P., Bhuyan A.K. Prediction of folding rates of small proteins: empirical relations based on length, secondary structure content, residue type, and stability. Biochemistry 2006, 45:3805-3812.
-
(2006)
Biochemistry
, vol.45
, pp. 3805-3812
-
-
Prabhu, N.P.1
Bhuyan, A.K.2
-
63
-
-
17144369578
-
Protein folding rates estimated from contact predictions
-
Punta M., Rost B. Protein folding rates estimated from contact predictions. J. Mol. Biol. 2005, 348:507-512.
-
(2005)
J. Mol. Biol.
, vol.348
, pp. 507-512
-
-
Punta, M.1
Rost, B.2
-
64
-
-
21444454088
-
PROFcon: novel prediction of long-range contacts
-
Punta M., Rost B. PROFcon: novel prediction of long-range contacts. Bioinformatics 2005, 21:2960-2968.
-
(2005)
Bioinformatics
, vol.21
, pp. 2960-2968
-
-
Punta, M.1
Rost, B.2
-
65
-
-
0030814427
-
An update of the DEF database of protein fold class predictions
-
Reczko M., Karras D., Bohr H. An update of the DEF database of protein fold class predictions. Nucleic Acids Res. 1997, 25:235.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 235
-
-
Reczko, M.1
Karras, D.2
Bohr, H.3
-
66
-
-
0028467707
-
Application of genetic function approximation to quantitative structure-activity relationships and quantitative structure-property relationships
-
Rogers D., Hopfinger A.J. Application of genetic function approximation to quantitative structure-activity relationships and quantitative structure-property relationships. J. Chem. Inf. Comput. Sci. 1994, 34:854-866.
-
(1994)
J. Chem. Inf. Comput. Sci.
, vol.34
, pp. 854-866
-
-
Rogers, D.1
Hopfinger, A.J.2
-
67
-
-
0037566828
-
A simple parameter relating sequences with folding rates of small alpha helical proteins
-
Shao H., Peng Y., Zeng Z.H. A simple parameter relating sequences with folding rates of small alpha helical proteins. Protein Peptide Lett. 2003, 10:277-280.
-
(2003)
Protein Peptide Lett.
, vol.10
, pp. 277-280
-
-
Shao, H.1
Peng, Y.2
Zeng, Z.H.3
-
68
-
-
33747880465
-
Ensemble classifier for protein fold pattern recognition
-
Shen H.B., Chou K.C. Ensemble classifier for protein fold pattern recognition. Bioinformatics 2006, 22:1717-1722.
-
(2006)
Bioinformatics
, vol.22
, pp. 1717-1722
-
-
Shen, H.B.1
Chou, K.C.2
-
69
-
-
37549004451
-
PseAAC: a flexible web server for generating various kinds of protein pseudo amino acid composition
-
Shen H.B., Chou K.C. PseAAC: a flexible web server for generating various kinds of protein pseudo amino acid composition. Anal. Biochem. 2008, 373:386-388.
-
(2008)
Anal. Biochem.
, vol.373
, pp. 386-388
-
-
Shen, H.B.1
Chou, K.C.2
-
70
-
-
69949110263
-
Prediction of protein folding rates from primary sequence by fusing multiple sequential features
-
Shen H.B., Song J.N., Chou K.C. Prediction of protein folding rates from primary sequence by fusing multiple sequential features. J. Biomed. Sci. Eng. 2009, 2:136-143.
-
(2009)
J. Biomed. Sci. Eng.
, vol.2
, pp. 136-143
-
-
Shen, H.B.1
Song, J.N.2
Chou, K.C.3
-
71
-
-
29244463544
-
Population structure inferred by local spatial autocorrelation: An example from an Amerindian tribal population
-
Sokal R.R., Thomson B.A. Population structure inferred by local spatial autocorrelation: An example from an Amerindian tribal population. Am. J. Phys. Anthropol. 2006, 129:121-131.
-
(2006)
Am. J. Phys. Anthropol.
, vol.129
, pp. 121-131
-
-
Sokal, R.R.1
Thomson, B.A.2
-
72
-
-
0029922443
-
Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins
-
Tomii K., Kanehisa M. Analysis of amino acid indices and mutation matrices for sequence comparison and structure prediction of proteins. Protein Eng. 1996, 9:27-36.
-
(1996)
Protein Eng.
, vol.9
, pp. 27-36
-
-
Tomii, K.1
Kanehisa, M.2
-
73
-
-
0034663581
-
Side-chain conformational entropy in protein unfolded states
-
Trevor P.C. Side-chain conformational entropy in protein unfolded states. Proteins: Struct. Funct. Genet. 2000, 40:443-450.
-
(2000)
Proteins: Struct. Funct. Genet.
, vol.40
, pp. 443-450
-
-
Trevor, P.C.1
-
74
-
-
0038724207
-
The importance of being earnest: validation is the absolute essential for successful application and interpretation of QSPR models
-
Tropsha A., Gramatica P., Gombar V.K. The importance of being earnest: validation is the absolute essential for successful application and interpretation of QSPR models. QSAR Comb. Sci. 2003, 22:69-77.
-
(2003)
QSAR Comb. Sci.
, vol.22
, pp. 69-77
-
-
Tropsha, A.1
Gramatica, P.2
Gombar, V.K.3
-
75
-
-
0027943145
-
Comparing the predictive accuracy of models using a simple randomization test
-
van der Voet H. Comparing the predictive accuracy of models using a simple randomization test. Chemometrics Intell. Lab. Syst. 1994, 25:313-323.
-
(1994)
Chemometrics Intell. Lab. Syst.
, vol.25
, pp. 313-323
-
-
van der Voet, H.1
-
76
-
-
0028851251
-
Autocorrelation of molecular surface properties for modeling corticosteroid binding globulin and cytosolic ah receptor activity by neural networks
-
Wagener M., Sadowski J., Gasteiger J. Autocorrelation of molecular surface properties for modeling corticosteroid binding globulin and cytosolic ah receptor activity by neural networks. J. Am. Chem. Soc. 2002, 117:7769-7775.
-
(2002)
J. Am. Chem. Soc.
, vol.117
, pp. 7769-7775
-
-
Wagener, M.1
Sadowski, J.2
Gasteiger, J.3
-
77
-
-
0033968062
-
Chemoinformatics-similarity and diversity in chemical libraries
-
Willett P. Chemoinformatics-similarity and diversity in chemical libraries. Curr. Opin. Biotechnol. 2000, 11:85-88.
-
(2000)
Curr. Opin. Biotechnol.
, vol.11
, pp. 85-88
-
-
Willett, P.1
-
78
-
-
72449157094
-
A combined molecular modeling study on gelatinases and their potent inhibitors
-
Xi L.L., Du J., Li S.Y., Li J.Z., Liu H.X., Yao X.J. A combined molecular modeling study on gelatinases and their potent inhibitors. J. Comput. Chem. 2010, 31:24-42.
-
(2010)
J. Comput. Chem.
, vol.31
, pp. 24-42
-
-
Xi, L.L.1
Du, J.2
Li, S.Y.3
Li, J.Z.4
Liu, H.X.5
Yao, X.J.6
-
79
-
-
13244258262
-
Mapping protein energy landscapes with amide hydrogen exchange and mass spectrometry: I. A generalized model for a two-state protein and comparison with experiment
-
Xiao H., Hoerner J.K., Eyles S.J., Dobo A., Voigtman E., Mel'cuk A.I., Kaltashov I.A. Mapping protein energy landscapes with amide hydrogen exchange and mass spectrometry: I. A generalized model for a two-state protein and comparison with experiment. Protein Sci. 2005, 14:543-557.
-
(2005)
Protein Sci.
, vol.14
, pp. 543-557
-
-
Xiao, H.1
Hoerner, J.K.2
Eyles, S.J.3
Dobo, A.4
Voigtman, E.5
Mel'cuk, A.I.6
Kaltashov, I.A.7
-
80
-
-
3342898158
-
Protein folding studied by real-time NMR spectroscopy
-
Zeeb M., Balbach J. Protein folding studied by real-time NMR spectroscopy. Methods 2004, 34:65-74.
-
(2004)
Methods
, vol.34
, pp. 65-74
-
-
Zeeb, M.1
Balbach, J.2
-
81
-
-
33750321978
-
A novel automated lazy learning QSAR (ALL-QSAR) approach: method development, applications, and virtual screening of chemical databases using validated ALL-QSAR models
-
Zhang S., Golbraikh A., Oloff S., Kohn H., Tropsha A. A novel automated lazy learning QSAR (ALL-QSAR) approach: method development, applications, and virtual screening of chemical databases using validated ALL-QSAR models. J. Chem. Inf. Model. 2006, 46:1984-1995.
-
(2006)
J. Chem. Inf. Model.
, vol.46
, pp. 1984-1995
-
-
Zhang, S.1
Golbraikh, A.2
Oloff, S.3
Kohn, H.4
Tropsha, A.5
-
82
-
-
0036215854
-
Folding rate prediction using total contact distance
-
Zhou H.Y., Zhou Y.Q. Folding rate prediction using total contact distance. Biophys. J. 2002, 82:458-463.
-
(2002)
Biophys. J.
, vol.82
, pp. 458-463
-
-
Zhou, H.Y.1
Zhou, Y.Q.2
|