-
1
-
-
0028947257
-
Funnels, pathways and the energy landscape of protein folding - A synthesis
-
Bryngelson J.D., Onuchic J.N., Socci N.D., Wolynes P.G. Funnels, pathways and the energy landscape of protein folding - a synthesis. Proteins: Struct. Funct. Genet. 21:1995;167-195.
-
(1995)
Proteins: Struct. Funct. Genet.
, vol.21
, pp. 167-195
-
-
Bryngelson, J.D.1
Onuchic, J.N.2
Socci, N.D.3
Wolynes, P.G.4
-
2
-
-
1842298212
-
From Levinthal to pathways to funnels
-
Dill K.A., Chan H.S. From Levinthal to pathways to funnels. Nature Struct. Biol. 4:1997;10-19.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 10-19
-
-
Dill, K.A.1
Chan, H.S.2
-
3
-
-
0037215268
-
The topomer search model: A simple, quantitative theory of two-state protein folding kinetics
-
Makarov D.E., Plaxco K.W. The topomer search model: a simple, quantitative theory of two-state protein folding kinetics. Protein Sci. 12:2002;17-26.
-
(2002)
Protein Sci.
, vol.12
, pp. 17-26
-
-
Makarov, D.E.1
Plaxco, K.W.2
-
4
-
-
0029940033
-
Molecular collapse: The rate-limiting step in two-state cytochrome c folding
-
Sosnick T.R., Mayne L., Englander S.W. Molecular collapse: the rate-limiting step in two-state cytochrome c folding. Proteins: Struct. Funct. Genet. 24:1996;413-426.
-
(1996)
Proteins: Struct. Funct. Genet.
, vol.24
, pp. 413-426
-
-
Sosnick, T.R.1
Mayne, L.2
Englander, S.W.3
-
5
-
-
0034604105
-
A surprising simplicity to protein folding
-
Baker D. A surprising simplicity to protein folding. Nature. 405:2000;39-42.
-
(2000)
Nature
, vol.405
, pp. 39-42
-
-
Baker, D.1
-
6
-
-
0032502839
-
Contact order, transition state placement and refolding rates of single domain proteins
-
Plaxco K.W., Simons K.T., Baker D. Contact order, transition state placement and refolding rates of single domain proteins. J. Mol. Biol. 277:1998;985-994.
-
(1998)
J. Mol. Biol.
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
7
-
-
0035906728
-
Rescuing a destabilized protein fold through backbone cyclization
-
Camarero J.A., Fushman D., Sato S., Giriat I., Cowburn D., Raleigh D.P., Muir T.W. Rescuing a destabilized protein fold through backbone cyclization. J. Mol. Biol. 308:2001;1045-1062.
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 1045-1062
-
-
Camarero, J.A.1
Fushman, D.2
Sato, S.3
Giriat, I.4
Cowburn, D.5
Raleigh, D.P.6
Muir, T.W.7
-
8
-
-
0345489611
-
Folding kinetics of a fluorescent variant of monomeric λ repressor
-
Ghaemmaghami S., Word J.M., Burton R.E., Richardson J.S., Oas T.G. Folding kinetics of a fluorescent variant of monomeric λ repressor. Biochemistry. 36:1998;7633-7637.
-
(1998)
Biochemistry
, vol.36
, pp. 7633-7637
-
-
Ghaemmaghami, S.1
Word, J.M.2
Burton, R.E.3
Richardson, J.S.4
Oas, T.G.5
-
9
-
-
0036215854
-
Folding rate prediction using total contact distance
-
Zhou H., Zhou Y. Folding rate prediction using total contact distance. Biophys. J. 82:2002;458-463.
-
(2002)
Biophys. J.
, vol.82
, pp. 458-463
-
-
Zhou, H.1
Zhou, Y.2
-
10
-
-
0035173844
-
The roles of stability and contact order in determining protein folding rates
-
Dinner A., Karplus M. The roles of stability and contact order in determining protein folding rates. Nature Struct. Biol. 8:2001;21-22.
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 21-22
-
-
Dinner, A.1
Karplus, M.2
-
12
-
-
0037133574
-
How the folding rate constant of simple, single-domain proteins depends on the number of native contacts
-
Makarov D.E., Keller C.A., Plaxco K.W., Metiu H. How the folding rate constant of simple, single-domain proteins depends on the number of native contacts. Proc. Natl Acad. Sci. USA. 99:2002;3535-3539.
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 3535-3539
-
-
Makarov, D.E.1
Keller, C.A.2
Plaxco, K.W.3
Metiu, H.4
-
13
-
-
0018782641
-
Hierarchic organization of domains in globular proteins
-
Rose G.D. Hierarchic organization of domains in globular proteins. J. Mol. Biol. 134:1979;447-470.
-
(1979)
J. Mol. Biol.
, vol.134
, pp. 447-470
-
-
Rose, G.D.1
-
15
-
-
0033405203
-
A physical basis for protein secondary structure
-
Srinivasan R., Rose G.D. A physical basis for protein secondary structure. Proc. Natl Acad. Sci. USA. 96:1999;14258-14263.
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 14258-14263
-
-
Srinivasan, R.1
Rose, G.D.2
-
16
-
-
0033080081
-
Is protein folding hierarchic? II. Folding intermediates and transition states
-
Baldwin R.L., Rose G.D. Is protein folding hierarchic? II. Folding intermediates and transition states. Trends Biochem. Sci. 24:1999;77-83.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 77-83
-
-
Baldwin, R.L.1
Rose, G.D.2
-
17
-
-
0032972986
-
Is protein folding hierarchic? I. Local structure and peptide folding
-
Baldwin R.L., Rose G.D. Is protein folding hierarchic? I. Local structure and peptide folding. Trends Biochem. Sci. 24:1999;26-33.
-
(1999)
Trends Biochem. Sci.
, vol.24
, pp. 26-33
-
-
Baldwin, R.L.1
Rose, G.D.2
-
18
-
-
0031940406
-
The early folding kinetics of apomyoglobin
-
Pappu R.V., Weaver D.L. The early folding kinetics of apomyoglobin. Protein Sci. 7:1998;480-490.
-
(1998)
Protein Sci.
, vol.7
, pp. 480-490
-
-
Pappu, R.V.1
Weaver, D.L.2
-
19
-
-
0035005366
-
Pre-organized secondary structure as an important determinant of fast protein folding
-
Myers J.K., Oas T.G. Pre-organized secondary structure as an important determinant of fast protein folding. Nature Struct. Biol. 8:2001;552-558.
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 552-558
-
-
Myers, J.K.1
Oas, T.G.2
-
20
-
-
0038502170
-
Folding dynamics and mechanism of beta-hairpin formation
-
Munoz V., Thompson P.A., Hofrichter J., Eaton W.A. Folding dynamics and mechanism of beta-hairpin formation. Nature. 390:1997;196-199.
-
(1997)
Nature
, vol.390
, pp. 196-199
-
-
Munoz, V.1
Thompson, P.A.2
Hofrichter, J.3
Eaton, W.A.4
-
21
-
-
0035997388
-
Mechanism of fast protein folding
-
Myers J.K., Oas T.G. Mechanism of fast protein folding. Annu. Rev. Biochem. 71:2002;783-815.
-
(2002)
Annu. Rev. Biochem.
, vol.71
, pp. 783-815
-
-
Myers, J.K.1
Oas, T.G.2
-
22
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
Kabsch W., Sander C. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers. 22:1983;2577-2637.
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
23
-
-
0034687123
-
Topology, stability, sequence, and length: Defining the determinants of two-state protein folding kinetics
-
Plaxco K.W., Simons K.T., Ruczinski I., Baker D. Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics. Biochemistry. 39:2000;11177-11183.
-
(2000)
Biochemistry
, vol.39
, pp. 11177-11183
-
-
Plaxco, K.W.1
Simons, K.T.2
Ruczinski, I.3
Baker, D.4
-
25
-
-
0036307683
-
Application of the diffusion-collision model to the folding of three-helix bundle proteins
-
Islam S.A., Karplus M., Weaver D.L. Application of the diffusion-collision model to the folding of three-helix bundle proteins. J. Mol. Biol. 318:2000;199-215.
-
(2000)
J. Mol. Biol.
, vol.318
, pp. 199-215
-
-
Islam, S.A.1
Karplus, M.2
Weaver, D.L.3
-
27
-
-
0035919635
-
Persistence of native-like topology in a denatured protein in 8 M urea
-
Shortle D., Ackerman M. Persistence of native-like topology in a denatured protein in 8 M urea. Science. 293:2001;487-489.
-
(2001)
Science
, vol.293
, pp. 487-489
-
-
Shortle, D.1
Ackerman, M.2
-
28
-
-
0036784642
-
A simple model for polyproline II in unfolded states of alanine-based peptides
-
Pappu R.V., Rose G.D. A simple model for polyproline II in unfolded states of alanine-based peptides. Protein Sci. 2002.
-
(2002)
Protein Sci.
-
-
Pappu, R.V.1
Rose, G.D.2
-
29
-
-
0028868995
-
The structure of the transition state for folding of chymotrypsin inhibitor 2 analyzed by protein-engineering methods: Evidence for a nucleation-condensation mechanisim for protein folding
-
Itzhaki L.S., Otzen D.E., Fersht A.R. The structure of the transition state for folding of chymotrypsin inhibitor 2 analyzed by protein-engineering methods: evidence for a nucleation-condensation mechanisim for protein folding. J. Mol. Biol. 254:1995;260-288.
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 260-288
-
-
Itzhaki, L.S.1
Otzen, D.E.2
Fersht, A.R.3
-
30
-
-
0035066647
-
φ-values for BPTI folding intermediates and implications for transition state analysis
-
Bulaj G., Goldenberg D.P. φ-values for BPTI folding intermediates and implications for transition state analysis. Nature Struct. Biol. 8:2001;326-330.
-
(2001)
Nature Struct. Biol.
, vol.8
, pp. 326-330
-
-
Bulaj, G.1
Goldenberg, D.P.2
-
31
-
-
0036260620
-
Understanding protein hydrogen bond formation with H/D amide isotope effects
-
Krantz B.A., Srivastava A.K., Nauli S., Baker D., Sauer R.T., Sosnick T.R. Understanding protein hydrogen bond formation with H/D amide isotope effects. Nature Struct. Biol. 9:2002;458-463.
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 458-463
-
-
Krantz, B.A.1
Srivastava, A.K.2
Nauli, S.3
Baker, D.4
Sauer, R.T.5
Sosnick, T.R.6
-
34
-
-
0033527587
-
Submillisecond folding of the peripheral subunit-binding domain
-
Spector S., Raleigh D.P. Submillisecond folding of the peripheral subunit-binding domain. J. Mol. Biol. 293:1999;763-768.
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 763-768
-
-
Spector, S.1
Raleigh, D.P.2
-
35
-
-
0033954256
-
The Protein Data Bank
-
Berman H.M., Westbrook J., Feng Z., Gilliland G., Bhat T.N., Weissig H., Shindyalov I.N., Bourne P.E. The Protein Data Bank. Nucl. Acids Res. 28:2000;235-242.
-
(2000)
Nucl. Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
36
-
-
0034610360
-
Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation
-
Mayor U., Johnson C.M., Daggett V., Fersht A.R. Protein folding and unfolding in microseconds to nanoseconds by experiment and simulation. Proc. Natl Acad. Sci. USA. 97:2000;13518-13522.
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 13518-13522
-
-
Mayor, U.1
Johnson, C.M.2
Daggett, V.3
Fersht, A.R.4
|