-
1
-
-
0035252648
-
How enzymes adapt: Lessons from directed evolution
-
Arnold, F. H., P. L. Wintrode, K. Miyazaki, and A. Gershenson. 2001. How enzymes adapt: lessons from directed evolution. Trends Biochem. Sci. 26:100-106.
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 100-106
-
-
Arnold, F.H.1
Wintrode, P.L.2
Miyazaki, K.3
Gershenson, A.4
-
2
-
-
0000180763
-
Temperature dependence of the hydrophobic interaction in protein folding
-
Baldwin, R. L. 1986. Temperature dependence of the hydrophobic interaction in protein folding. Proc. Natl. Acad. Sci. USA. 83:8069-8072.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 8069-8072
-
-
Baldwin, R.L.1
-
3
-
-
0033596744
-
Comparing the thermodynamic stabilities of a related thermophilic and mesophilic enzyme
-
Beadle, B. M., W. A. Baase, D. B. Wilson, N. R. Gilkes, and B. K. Shoichet. 1999. Comparing the thermodynamic stabilities of a related thermophilic and mesophilic enzyme. Biochemistry. 38:2570-2576.
-
(1999)
Biochemistry
, vol.38
, pp. 2570-2576
-
-
Beadle, B.M.1
Baase, W.A.2
Wilson, D.B.3
Gilkes, N.R.4
Shoichet, B.K.5
-
7
-
-
0034636990
-
A view of dynamics changes in the molten globulenative folding step by quasielastic neutron scattering
-
Bu, Z., D. A. Neumann, S.-H. Lee, C. M. Brown, D. M. Engelmann, and C. C. Han. 2000. A view of dynamics changes in the molten globulenative folding step by quasielastic neutron scattering. J. Mol. Biol. 301: 525-536.
-
(2000)
J. Mol. Biol.
, vol.301
, pp. 525-536
-
-
Bu, Z.1
Neumann, D.A.2
Lee, S.-H.3
Brown, C.M.4
Engelmann, D.M.5
Han, C.C.6
-
8
-
-
0033612756
-
Stability and activity of mesophilic subtilisin E and its thermophilic homolog: Insights from molecular dynamics simulations
-
Colombo, G., and K. M. Merz. 1999. Stability and activity of mesophilic subtilisin E and its thermophilic homolog: insights from molecular dynamics simulations. J. Am. Chem. Soc. 121:6895-6903.
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 6895-6903
-
-
Colombo, G.1
Merz, K.M.2
-
9
-
-
0034663581
-
Side chain conformational entropy in protein unfolded states
-
Creamer, T. P. 2000. Side chain conformational entropy in protein unfolded states. Proteins. 40:443-450.
-
(2000)
Proteins
, vol.40
, pp. 443-450
-
-
Creamer, T.P.1
-
10
-
-
0028871798
-
Side-chain conformational entropy in protein folding
-
Doig, A. J., and J. E. Sternberg. 1995. Side-chain conformational entropy in protein folding. Protein Sci. 4:2247-2251.
-
(1995)
Protein Sci.
, vol.4
, pp. 2247-2251
-
-
Doig, A.J.1
Sternberg, J.E.2
-
11
-
-
0031851978
-
Equilibrium NMR studies of unfolded and partially folded proteins
-
Dyson, H. J., and P. E. Wright. 1998. Equilibrium NMR studies of unfolded and partially folded proteins. Nat. Struct. Biol. 5 (Suppl):499-503.
-
(1998)
Nat. Struct. Biol.
, vol.5
, Issue.SUPPL.
, pp. 499-503
-
-
Dyson, H.J.1
Wright, P.E.2
-
12
-
-
0033528657
-
Thermodynamic stability of a cold-active α-amylase from antarctic bacterium Alteromonas haloplanctis
-
Feller, G., D. d'Amico, and C. Gerday. 1999. Thermodynamic stability of a cold-active α-amylase from antarctic bacterium Alteromonas haloplanctis. Biochemistry. 38:4613-4619.
-
(1999)
Biochemistry
, vol.38
, pp. 4613-4619
-
-
Feller, G.1
D'Amico, D.2
Gerday, C.3
-
14
-
-
0032555351
-
Function and picosecond dynamics of bacteriorhodopsin in purple membrane at different lipidation and hydration
-
Fitter, J., S. A. W. Verclas, R. E. Lechner, H. Seelert, and N. A. Dencher. 1998. Function and picosecond dynamics of bacteriorhodopsin in purple membrane at different lipidation and hydration. FEBS Lett. 433:321-325.
-
(1998)
FEBS Lett.
, vol.433
, pp. 321-325
-
-
Fitter, J.1
Verclas, S.A.W.2
Lechner, R.E.3
Seelert, H.4
Dencher, N.A.5
-
15
-
-
0033865067
-
Structural equilibrium fluctuations in mesophilic and thermophilic α-amylase
-
Fitter, J., and J. Heberle. 2000. Structural equilibrium fluctuations in mesophilic and thermophilic α-amylase. Biophys. J. 79:1629-1636.
-
(2000)
Biophys. J.
, vol.79
, pp. 1629-1636
-
-
Fitter, J.1
Heberle, J.2
-
16
-
-
0035807038
-
Activity and stability of a thermostable α-amylase compared to its mesophilic homologue: Mechanisms of thermal adaptation
-
Fitter, J., R. Herrmann, N. A. Dencher, A. Blume, and T. Hauß. 2001a. Activity and stability of a thermostable α-amylase compared to its mesophilic homologue: mechanisms of thermal adaptation. Biochemistry. 40:10723-10731.
-
(2001)
Biochemistry
, vol.40
, pp. 10723-10731
-
-
Fitter, J.1
Herrmann, R.2
Dencher, N.A.3
Blume, A.4
Hauß, T.5
-
17
-
-
0035398397
-
Dynamical properties of a-amylase in the folded and unfolded state: The role of thermal equilibrium fluctuations for conformational entropy and protein stabilisation
-
Fitter, J., R. Herrmann, T. Hauß, R. E. Lechner, and N. A. Dencher. 2001b. Dynamical properties of a-amylase in the folded and unfolded state: the role of thermal equilibrium fluctuations for conformational entropy and protein stabilisation. Physica B. 301:1-7.
-
(2001)
Physica B
, vol.301
, pp. 1-7
-
-
Fitter, J.1
Herrmann, R.2
Hauß, T.3
Lechner, R.E.4
Dencher, N.A.5
-
18
-
-
0026320866
-
The energy landscapes and motions of proteins
-
Frauenfelder, H., S. G. Silgar, and P. G. Wolynes. 1991. The energy landscapes and motions of proteins. Science. 254:1598-1603.
-
(1991)
Science
, vol.254
, pp. 1598-1603
-
-
Frauenfelder, H.1
Silgar, S.G.2
Wolynes, P.G.3
-
19
-
-
0023475026
-
Configurational entropy of native proteins
-
Karplus, M., T. Ichiye, and B. M. Pettitt. 1987. Configurational entropy of native proteins. Biophys. J. 52:1083-1085.
-
(1987)
Biophys. J.
, vol.52
, pp. 1083-1085
-
-
Karplus, M.1
Ichiye, T.2
Pettitt, B.M.3
-
20
-
-
0031853060
-
Protein dynamics from NMR
-
Kay, L. E. 1998. Protein dynamics from NMR. Nat. Struct. Biol. 5:513-515.
-
(1998)
Nat. Struct. Biol.
, vol.5
, pp. 513-515
-
-
Kay, L.E.1
-
21
-
-
0028100759
-
Liquid-like side-chain dynamics in myoglobin
-
Kneller, G. R., and J. C. Smith. 1994. Liquid-like side-chain dynamics in myoglobin. J. Mol. Biol. 242:181-185.
-
(1994)
J. Mol. Biol.
, vol.242
, pp. 181-185
-
-
Kneller, G.R.1
Smith, J.C.2
-
22
-
-
0033988897
-
Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex
-
Lee, A. L., S. A. Kinnear, and A. J. Wand. 2002. Redistribution and loss of side chain entropy upon formation of a calmodulin-peptide complex. Nat. Struct. Biol. 7:72-77.
-
(2002)
Nat. Struct. Biol.
, vol.7
, pp. 72-77
-
-
Lee, A.L.1
Kinnear, S.A.2
Wand, A.J.3
-
24
-
-
0030864810
-
Reduced BPTI is collapsed. A pulsed field gradient NMR study of unfolded and partially folded bovine pancreatic trypsin inhibitor
-
Pan, H., G. Barany, and C. Woodward. 1997. Reduced BPTI is collapsed. A pulsed field gradient NMR study of unfolded and partially folded bovine pancreatic trypsin inhibitor, Protein Science 6:1985-1992.
-
(1997)
Protein Science
, vol.6
, pp. 1985-1992
-
-
Pan, H.1
Barany, G.2
Woodward, C.3
-
25
-
-
0043194670
-
Evolution of the internal dynamics of two globular proteins from dry powder to solution
-
Perez, J., J. M. Zanotti, and D. Durand. 1999. Evolution of the internal dynamics of two globular proteins from dry powder to solution. Biophys. J. 77:454-469.
-
(1999)
Biophys. J.
, vol.77
, pp. 454-469
-
-
Perez, J.1
Zanotti, J.M.2
Durand, D.3
-
26
-
-
0027250627
-
Contribution of hydration to protein folding thermodynamics
-
Privalov, P. L., and G. I. Makhatadze. 1993. Contribution of hydration to protein folding thermodynamics. J. Mol. Biol. 232:660-679.
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 660-679
-
-
Privalov, P.L.1
Makhatadze, G.I.2
-
27
-
-
0000820095
-
Thermodynamics of protein folding
-
Privalov, P. L. 1997. Thermodynamics of protein folding. J. Chem. Thermodyn. 29:447-474.
-
(1997)
J. Chem. Thermodyn.
, vol.29
, pp. 447-474
-
-
Privalov, P.L.1
-
28
-
-
0026720247
-
Crystalline ribonuclease A losses function below the dynamical transition
-
Rasmussen, B. F., A. M. Stoc, D. Ringe, and G. A. Petsko. 1992. Crystalline ribonuclease A losses function below the dynamical transition. Nature. 357:423-424.
-
(1992)
Nature
, vol.357
, pp. 423-424
-
-
Rasmussen, B.F.1
Stoc, A.M.2
Ringe, D.3
Petsko, G.A.4
-
29
-
-
0030927638
-
Picosecond dynamical changes on denaturation of yeast phosphoglycerate kinase revealed by quasielastic neutron scattering
-
Receveur, V., P. Calmettes, J. C. Smith, M. Desmadril, G. Coddens, and D. Durand. 1997. Picosecond dynamical changes on denaturation of yeast phosphoglycerate kinase revealed by quasielastic neutron scattering. Proteins. 28:380-387.
-
(1997)
Proteins
, vol.28
, pp. 380-387
-
-
Receveur, V.1
Calmettes, P.2
Smith, J.C.3
Desmadril, M.4
Coddens, G.5
Durand, D.6
-
30
-
-
0025877453
-
Protein hydration and function
-
Rupley, J. A., and G. Careri. 1991. Protein hydration and function. Adv. Protein Chem. 41:37-172.
-
(1991)
Adv. Protein Chem.
, vol.41
, pp. 37-172
-
-
Rupley, J.A.1
Careri, G.2
-
31
-
-
0001351515
-
Estimation of absolute and relative entropies of macromolecules using the covariance matrix
-
Schlitter, J. 1993. Estimation of absolute and relative entropies of macromolecules using the covariance matrix. Chem Phys. Lett. 215: 617-621.
-
(1993)
Chem Phys. Lett.
, vol.215
, pp. 617-621
-
-
Schlitter, J.1
-
32
-
-
0035940465
-
Temperature dependence of dynamics and thermodynamics of the regulatory protein domain of human cardiac tropin C
-
Spyracopoulos, L., P. Lavigne, M. P. Crump, S. M. Gagne, C. M. Kay, and B. D. Sykes. 2001. Temperature dependence of dynamics and thermodynamics of the regulatory protein domain of human cardiac tropin C. Biochemistry. 40:12541-12551.
-
(2001)
Biochemistry
, vol.40
, pp. 12541-12551
-
-
Spyracopoulos, L.1
Lavigne, P.2
Crump, M.P.3
Gagne, S.M.4
Kay, C.M.5
Sykes, B.D.6
-
33
-
-
0034868445
-
NMR relaxation studies of the role of conformational entropy in protein stability and ligand binding
-
Stone, M. J. 2001. NMR relaxation studies of the role of conformational entropy in protein stability and ligand binding. Acc. Chem. Res. 34:379-388.
-
(2001)
Acc. Chem. Res.
, vol.34
, pp. 379-388
-
-
Stone, M.J.1
-
34
-
-
0002638463
-
Heat capacity and entropy changes in processes involving proteins
-
Sturtevant, J. M. 1977. Heat capacity and entropy changes in processes involving proteins. Proc. Natl. Acad. Sci. USA. 74:2236-2240.
-
(1977)
Proc. Natl. Acad. Sci. USA
, vol.74
, pp. 2236-2240
-
-
Sturtevant, J.M.1
-
35
-
-
19044399611
-
Role of protein-water hydrogen bond dynamics in the protein dynamical transition
-
Tarek, M., and D. J. Tobias. 2002. Role of protein-water hydrogen bond dynamics in the protein dynamical transition. Phys. Rev. Lett. 88:138101-138104.
-
(2002)
Phys. Rev. Lett.
, vol.88
, pp. 138101-138104
-
-
Tarek, M.1
Tobias, D.J.2
-
36
-
-
0007300482
-
Correlations in space and time and Born approximation scattering in systems of interacting particles
-
Van Hove, L. 1954. Correlations in space and time and Born approximation scattering in systems of interacting particles. Phys. Rev. Lett. 95:249-262.
-
(1954)
Phys. Rev. Lett.
, vol.95
, pp. 249-262
-
-
Van Hove, L.1
-
37
-
-
0000656973
-
Neutron incoherent scattering law for diffusion in a potential of spherical symmetry: General formalism and application to diffusion inside a sphere
-
Volino, F., and A. J. Dianoux. 1980. Neutron incoherent scattering law for diffusion in a potential of spherical symmetry: general formalism and application to diffusion inside a sphere. Mol. Phys. 41:271-279.
-
(1980)
Mol. Phys.
, vol.41
, pp. 271-279
-
-
Volino, F.1
Dianoux, A.J.2
-
38
-
-
0027980359
-
Molecular basis of cooperativity in protein folding
-
Xie, D., and E. Freire. 1994. Molecular basis of cooperativity in protein folding. Proteins. 19:291-301.
-
(1994)
Proteins
, vol.19
, pp. 291-301
-
-
Xie, D.1
Freire, E.2
-
39
-
-
0030601792
-
Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: Application to protein folding
-
Yang, D., and L. E. Kay. 1996. Contributions to conformational entropy arising from bond vector fluctuations measured from NMR-derived order parameters: application to protein folding. J. Mol. Biol. 263:369-382.
-
(1996)
J. Mol. Biol.
, vol.263
, pp. 369-382
-
-
Yang, D.1
Kay, L.E.2
-
40
-
-
0034595671
-
How soft is a protein? A protein dynamics force constant measured by neutron scattering
-
Zaccai, G. 2000. How soft is a protein? A protein dynamics force constant measured by neutron scattering. Science. 288:1604-1607.
-
(2000)
Science
, vol.288
, pp. 1604-1607
-
-
Zaccai, G.1
|