-
2
-
-
67650741773
-
Motors, switches, and contacts in a replisome
-
Hamdan S.M., and Richardson C.C. Motors, switches, and contacts in a replisome. Annu. Rev. Biochem. 78 (2009) 205-243
-
(2009)
Annu. Rev. Biochem.
, vol.78
, pp. 205-243
-
-
Hamdan, S.M.1
Richardson, C.C.2
-
3
-
-
54349118941
-
SSB as an organizer/mobilizer of genome maintenance complexes
-
Shereda R.D., Kozlov A.G., Lohman T.M., Cox M.M., and Keck J.L. SSB as an organizer/mobilizer of genome maintenance complexes. Crit. Rev. Biochem. Mol. Biol. 43 (2008) 289-318
-
(2008)
Crit. Rev. Biochem. Mol. Biol.
, vol.43
, pp. 289-318
-
-
Shereda, R.D.1
Kozlov, A.G.2
Lohman, T.M.3
Cox, M.M.4
Keck, J.L.5
-
4
-
-
0032568497
-
Dissecting the order of bacteriophage T4 DNA polymerase holoenzyme assembly
-
Sexton D.J., Kaboord B.F., Berdis A.J., Carver T.E., and Benkovic S.J. Dissecting the order of bacteriophage T4 DNA polymerase holoenzyme assembly. Biochemistry 37 (1998) 7749-7756
-
(1998)
Biochemistry
, vol.37
, pp. 7749-7756
-
-
Sexton, D.J.1
Kaboord, B.F.2
Berdis, A.J.3
Carver, T.E.4
Benkovic, S.J.5
-
6
-
-
0035856473
-
Clamp loader structure predicts the architecture of DNA polymerase III holoenzyme and RFC
-
O'Donnell M., Jeruzalmi D., and Kuriyan J. Clamp loader structure predicts the architecture of DNA polymerase III holoenzyme and RFC. Curr. Biol. 11 (2001) R935-946
-
(2001)
Curr. Biol.
, vol.11
-
-
O'Donnell, M.1
Jeruzalmi, D.2
Kuriyan, J.3
-
7
-
-
0035906661
-
Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection
-
Patel P.H., Suzuki M., Adman E., Shinkai A., and Loeb L.A. Prokaryotic DNA polymerase I: evolution, structure, and "base flipping" mechanism for nucleotide selection. J. Mol. Biol. 308 (2001) 823-837
-
(2001)
J. Mol. Biol.
, vol.308
, pp. 823-837
-
-
Patel, P.H.1
Suzuki, M.2
Adman, E.3
Shinkai, A.4
Loeb, L.A.5
-
8
-
-
33947517676
-
A survey of single-molecule techniques in chemical biology
-
Cornish P.V., and Ha T. A survey of single-molecule techniques in chemical biology. ACS Chem. Biol. 2 (2007) 53-61
-
(2007)
ACS Chem. Biol.
, vol.2
, pp. 53-61
-
-
Cornish, P.V.1
Ha, T.2
-
9
-
-
0033548686
-
Fluorescence spectroscopy of single biomolecules
-
Weiss S. Fluorescence spectroscopy of single biomolecules. Science 283 (1999) 1676-1683
-
(1999)
Science
, vol.283
, pp. 1676-1683
-
-
Weiss, S.1
-
10
-
-
0033813064
-
Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy
-
Weiss S. Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy. Nat. Struct. Biol. 7 (2000) 724-729
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 724-729
-
-
Weiss, S.1
-
12
-
-
0037832404
-
Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization
-
Yildiz A., Forkey J.N., McKinney S.A., Ha T., Goldman Y.E., and Selvin P.R. Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization. Science 300 (2003) 2061-2065
-
(2003)
Science
, vol.300
, pp. 2061-2065
-
-
Yildiz, A.1
Forkey, J.N.2
McKinney, S.A.3
Ha, T.4
Goldman, Y.E.5
Selvin, P.R.6
-
13
-
-
30144436268
-
RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP
-
Dumont S., Cheng W., Serebrov V., Beran R.K., Tinoco Jr. I., Pyle A.M., and Bustamante C. RNA translocation and unwinding mechanism of HCV NS3 helicase and its coordination by ATP. Nature 439 (2006) 105-108
-
(2006)
Nature
, vol.439
, pp. 105-108
-
-
Dumont, S.1
Cheng, W.2
Serebrov, V.3
Beran, R.K.4
Tinoco Jr., I.5
Pyle, A.M.6
Bustamante, C.7
-
14
-
-
34447509295
-
Antitumour drugs impede DNA uncoiling by topoisomerase I
-
Koster D.A., Palle K., Bot E.S., Bjornsti M.A., and Dekker N.H. Antitumour drugs impede DNA uncoiling by topoisomerase I. Nature 448 (2007) 213-217
-
(2007)
Nature
, vol.448
, pp. 213-217
-
-
Koster, D.A.1
Palle, K.2
Bot, E.S.3
Bjornsti, M.A.4
Dekker, N.H.5
-
15
-
-
42449159316
-
Single-molecule observations of topotecan-mediated TopIB activity at a unique DNA sequence
-
Koster D.A., Czerwinski F., Halby L., Crut A., Vekhoff P., Palle K., Arimondo P.B., and Dekker N.H. Single-molecule observations of topotecan-mediated TopIB activity at a unique DNA sequence. Nucleic Acids Res. 36 (2008) 2301-2310
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 2301-2310
-
-
Koster, D.A.1
Czerwinski, F.2
Halby, L.3
Crut, A.4
Vekhoff, P.5
Palle, K.6
Arimondo, P.B.7
Dekker, N.H.8
-
16
-
-
63349107871
-
Analysis of the eukaryotic topoisomerase II DNA gate: a single-molecule FRET and structural perspective
-
Collins T.R., Hammes G.G., and Hsieh T.S. Analysis of the eukaryotic topoisomerase II DNA gate: a single-molecule FRET and structural perspective. Nucleic Acids Res. 37 (2009) 712-720
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 712-720
-
-
Collins, T.R.1
Hammes, G.G.2
Hsieh, T.S.3
-
17
-
-
0043194014
-
Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases
-
Charvin G., Bensimon D., and Croquette V. Single-molecule study of DNA unlinking by eukaryotic and prokaryotic type-II topoisomerases. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 9820-9825
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 9820-9825
-
-
Charvin, G.1
Bensimon, D.2
Croquette, V.3
-
19
-
-
0038061515
-
Thermophilic topoisomerase I on a single DNA molecule
-
Dekker N.H., Viard T., de La Tour C.B., Duguet M., Bensimon D., and Croquette V. Thermophilic topoisomerase I on a single DNA molecule. J. Mol. Biol. 329 (2003) 271-282
-
(2003)
J. Mol. Biol.
, vol.329
, pp. 271-282
-
-
Dekker, N.H.1
Viard, T.2
de La Tour, C.B.3
Duguet, M.4
Bensimon, D.5
Croquette, V.6
-
20
-
-
0034690257
-
Single-molecule analysis of DNA uncoiling by a type II topoisomerase
-
Strick T.R., Croquette V., and Bensimon D. Single-molecule analysis of DNA uncoiling by a type II topoisomerase. Nature 404 (2000) 901-904
-
(2000)
Nature
, vol.404
, pp. 901-904
-
-
Strick, T.R.1
Croquette, V.2
Bensimon, D.3
-
21
-
-
64349121964
-
Bacterial translocation motors investigated by single molecule techniques
-
Allemand J.F., and Maier B. Bacterial translocation motors investigated by single molecule techniques. FEMS Microbiol. Rev. 33 (2009) 593-610
-
(2009)
FEMS Microbiol. Rev.
, vol.33
, pp. 593-610
-
-
Allemand, J.F.1
Maier, B.2
-
22
-
-
43249117738
-
Sequence-directed DNA export guides chromosome translocation during sporulation in Bacillus subtilis
-
Ptacin J.L., Nollmann M., Becker E.C., Cozzarelli N.R., Pogliano K., and Bustamante C. Sequence-directed DNA export guides chromosome translocation during sporulation in Bacillus subtilis. Nat. Struct. Mol. Biol. 15 (2008) 485-493
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 485-493
-
-
Ptacin, J.L.1
Nollmann, M.2
Becker, E.C.3
Cozzarelli, N.R.4
Pogliano, K.5
Bustamante, C.6
-
24
-
-
18744408766
-
Single-molecule manipulation measurements of DNA transport proteins
-
Saleh O.A., Allemand J.F., Croquette V., and Bensimon D. Single-molecule manipulation measurements of DNA transport proteins. Chemphyschem 6 (2005) 813-818
-
(2005)
Chemphyschem
, vol.6
, pp. 813-818
-
-
Saleh, O.A.1
Allemand, J.F.2
Croquette, V.3
Bensimon, D.4
-
25
-
-
20444500568
-
Analysis of DNA supercoil induction by FtsK indicates translocation without groove-tracking
-
Saleh O.A., Bigot S., Barre F.X., and Allemand J.F. Analysis of DNA supercoil induction by FtsK indicates translocation without groove-tracking. Nat. Struct. Mol. Biol. 12 (2005) 436-440
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 436-440
-
-
Saleh, O.A.1
Bigot, S.2
Barre, F.X.3
Allemand, J.F.4
-
26
-
-
3242699635
-
Fast, DNA-sequence independent translocation by FtsK in a single-molecule experiment
-
Saleh O.A., Perals C., Barre F.X., and Allemand J.F. Fast, DNA-sequence independent translocation by FtsK in a single-molecule experiment. EMBO J. 23 (2004) 2430-2439
-
(2004)
EMBO J.
, vol.23
, pp. 2430-2439
-
-
Saleh, O.A.1
Perals, C.2
Barre, F.X.3
Allemand, J.F.4
-
27
-
-
0023665337
-
Escherichia coli thioredoxin stabilizes complexes of bacteriophage T7 DNA polymerase and primed templates
-
Huber H.E., Tabor S., and Richardson C.C. Escherichia coli thioredoxin stabilizes complexes of bacteriophage T7 DNA polymerase and primed templates. J. Biol. Chem. 262 (1987) 16224-16232
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 16224-16232
-
-
Huber, H.E.1
Tabor, S.2
Richardson, C.C.3
-
28
-
-
0032518398
-
Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution
-
Doublie S., Tabor S., Long A.M., Richardson C.C., and Ellenberger T. Crystal structure of a bacteriophage T7 DNA replication complex at 2.2 A resolution. Nature 391 (1998) 251-258
-
(1998)
Nature
, vol.391
, pp. 251-258
-
-
Doublie, S.1
Tabor, S.2
Long, A.M.3
Richardson, C.C.4
Ellenberger, T.5
-
29
-
-
0026356394
-
Requirements for primer synthesis by bacteriophage T7 63-kDa gene 4 protein. Roles of template sequence and T7 56-kDa gene 4 protein
-
Mendelman L.V., and Richardson C.C. Requirements for primer synthesis by bacteriophage T7 63-kDa gene 4 protein. Roles of template sequence and T7 56-kDa gene 4 protein. J. Biol. Chem. 266 (1991) 23240-23250
-
(1991)
J. Biol. Chem.
, vol.266
, pp. 23240-23250
-
-
Mendelman, L.V.1
Richardson, C.C.2
-
30
-
-
2142675722
-
Template recognition sequence for RNA primer synthesis by gene 4 protein of bacteriophage T7
-
Tabor S., and Richardson C.C. Template recognition sequence for RNA primer synthesis by gene 4 protein of bacteriophage T7. Proc. Natl. Acad. Sci. U. S. A. 78 (1981) 205-209
-
(1981)
Proc. Natl. Acad. Sci. U. S. A.
, vol.78
, pp. 205-209
-
-
Tabor, S.1
Richardson, C.C.2
-
31
-
-
0031040805
-
Template recognition and ribonucleotide specificity of the DNA primase of bacteriophage T7
-
Kusakabe T., and Richardson C.C. Template recognition and ribonucleotide specificity of the DNA primase of bacteriophage T7. J. Biol. Chem. 272 (1997) 5943-5951
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 5943-5951
-
-
Kusakabe, T.1
Richardson, C.C.2
-
32
-
-
0038054465
-
Modular architecture of the bacteriophage T7 primase couples RNA primer synthesis to DNA synthesis
-
Kato M., Ito T., Wagner G., Richardson C.C., and Ellenberger T. Modular architecture of the bacteriophage T7 primase couples RNA primer synthesis to DNA synthesis. Mol. Cell 11 (2003) 1349-1360
-
(2003)
Mol. Cell
, vol.11
, pp. 1349-1360
-
-
Kato, M.1
Ito, T.2
Wagner, G.3
Richardson, C.C.4
Ellenberger, T.5
-
33
-
-
2542484343
-
Effect of single-stranded DNA-binding proteins on the helicase and primase activities of the bacteriophage T7 gene 4 protein
-
He Z.G., and Richardson C.C. Effect of single-stranded DNA-binding proteins on the helicase and primase activities of the bacteriophage T7 gene 4 protein. J. Biol. Chem. 279 (2004) 22190-22197
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 22190-22197
-
-
He, Z.G.1
Richardson, C.C.2
-
34
-
-
0031587827
-
Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69
-
Wang J., Sattar A.K., Wang C.C., Karam J.D., Konigsberg W.H., and Steitz T.A. Crystal structure of a pol alpha family replication DNA polymerase from bacteriophage RB69. Cell 89 (1997) 1087-1099
-
(1997)
Cell
, vol.89
, pp. 1087-1099
-
-
Wang, J.1
Sattar, A.K.2
Wang, C.C.3
Karam, J.D.4
Konigsberg, W.H.5
Steitz, T.A.6
-
35
-
-
0035369086
-
Structure of the replicating complex of a pol alpha family DNA polymerase
-
Franklin M.C., Wang J., and Steitz T.A. Structure of the replicating complex of a pol alpha family DNA polymerase. Cell 105 (2001) 657-667
-
(2001)
Cell
, vol.105
, pp. 657-667
-
-
Franklin, M.C.1
Wang, J.2
Steitz, T.A.3
-
36
-
-
33846493138
-
A structural rationale for stalling of a replicative DNA polymerase at the most common oxidative thymine lesion, thymine glycol
-
Aller P., Rould M.A., Hogg M., Wallace S.S., and Doublie S. A structural rationale for stalling of a replicative DNA polymerase at the most common oxidative thymine lesion, thymine glycol. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 814-818
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 814-818
-
-
Aller, P.1
Rould, M.A.2
Hogg, M.3
Wallace, S.S.4
Doublie, S.5
-
37
-
-
2442450532
-
Dual functions of single-stranded DNA-binding protein in helicase loading at the bacteriophage T4 DNA replication fork
-
Ma Y., Wang T., Villemain J.L., Giedroc D.P., and Morrical S.W. Dual functions of single-stranded DNA-binding protein in helicase loading at the bacteriophage T4 DNA replication fork. J. Biol. Chem. 279 (2004) 19035-19045
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 19035-19045
-
-
Ma, Y.1
Wang, T.2
Villemain, J.L.3
Giedroc, D.P.4
Morrical, S.W.5
-
38
-
-
0034628915
-
Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage
-
Moarefi I., Jeruzalmi D., Turner J., O'Donnell M., and Kuriyan J. Crystal structure of the DNA polymerase processivity factor of T4 bacteriophage. J. Mol. Biol. 296 (2000) 1215-1223
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1215-1223
-
-
Moarefi, I.1
Jeruzalmi, D.2
Turner, J.3
O'Donnell, M.4
Kuriyan, J.5
-
39
-
-
0035909835
-
A zinc ribbon protein in DNA replication: primer synthesis and macromolecular interactions by the bacteriophage T4 primase
-
Valentine A.M., Ishmael F.T., Shier V.K., and Benkovic S.J. A zinc ribbon protein in DNA replication: primer synthesis and macromolecular interactions by the bacteriophage T4 primase. Biochemistry 40 (2001) 15074-15085
-
(2001)
Biochemistry
, vol.40
, pp. 15074-15085
-
-
Valentine, A.M.1
Ishmael, F.T.2
Shier, V.K.3
Benkovic, S.J.4
-
40
-
-
0022345854
-
The polymerase subunit of DNA polymerase III of Escherichia coli. II. Purification of the alpha subunit, devoid of nuclease activities
-
Maki H., and Kornberg A. The polymerase subunit of DNA polymerase III of Escherichia coli. II. Purification of the alpha subunit, devoid of nuclease activities. J. Biol. Chem. 260 (1985) 12987-12992
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 12987-12992
-
-
Maki, H.1
Kornberg, A.2
-
41
-
-
1642351959
-
Distinct roles of DNA polymerases delta and epsilon at the replication fork in Xenopus egg extracts
-
Fukui T., Yamauchi K., Muroya T., Akiyama M., Maki H., Sugino A., and Waga S. Distinct roles of DNA polymerases delta and epsilon at the replication fork in Xenopus egg extracts. Genes Cells 9 (2004) 179-191
-
(2004)
Genes Cells
, vol.9
, pp. 179-191
-
-
Fukui, T.1
Yamauchi, K.2
Muroya, T.3
Akiyama, M.4
Maki, H.5
Sugino, A.6
Waga, S.7
-
42
-
-
54249092768
-
Dividing the workload at a eukaryotic replication fork
-
Kunkel T.A., and Burgers P.M. Dividing the workload at a eukaryotic replication fork. Trends Cell Biol. 18 (2008) 521-527
-
(2008)
Trends Cell Biol.
, vol.18
, pp. 521-527
-
-
Kunkel, T.A.1
Burgers, P.M.2
-
43
-
-
0036345594
-
Yeast origins establish a strand bias for replicational mutagenesis
-
Pavlov Y.I., Newlon C.S., and Kunkel T.A. Yeast origins establish a strand bias for replicational mutagenesis. Mol. Cell 10 (2002) 207-213
-
(2002)
Mol. Cell
, vol.10
, pp. 207-213
-
-
Pavlov, Y.I.1
Newlon, C.S.2
Kunkel, T.A.3
-
44
-
-
42949119884
-
Division of labor at the eukaryotic replication fork
-
Nick McElhinny S.A., Gordenin D.A., Stith C.M., Burgers P.M., and Kunkel T.A. Division of labor at the eukaryotic replication fork. Mol. Cell 30 (2008) 137-144
-
(2008)
Mol. Cell
, vol.30
, pp. 137-144
-
-
Nick McElhinny, S.A.1
Gordenin, D.A.2
Stith, C.M.3
Burgers, P.M.4
Kunkel, T.A.5
-
45
-
-
34447336941
-
Yeast DNA polymerase epsilon participates in leading-strand DNA replication
-
Pursell Z.F., Isoz I., Lundstrom E.B., Johansson E., and Kunkel T.A. Yeast DNA polymerase epsilon participates in leading-strand DNA replication. Science 317 (2007) 127-130
-
(2007)
Science
, vol.317
, pp. 127-130
-
-
Pursell, Z.F.1
Isoz, I.2
Lundstrom, E.B.3
Johansson, E.4
Kunkel, T.A.5
-
47
-
-
39449123549
-
The MCM complex: (just) a replicative helicase?
-
Costa A., and Onesti S. The MCM complex: (just) a replicative helicase?. Biochem. Soc. Trans. 36 (2008) 136-140
-
(2008)
Biochem. Soc. Trans.
, vol.36
, pp. 136-140
-
-
Costa, A.1
Onesti, S.2
-
48
-
-
0020286426
-
Studies on DNA replication in the bacteriophage T4 in vitro system
-
Alberts B.M., Barry J., Bedinger P., Formosa T., Jongeneel C.V., and Kreuzer K.N. Studies on DNA replication in the bacteriophage T4 in vitro system. Cold Spring Harbor Symp. Quant. Biol. 47 Pt 2 (1983) 655-668
-
(1983)
Cold Spring Harbor Symp. Quant. Biol.
, vol.47
, Issue.PART 2
, pp. 655-668
-
-
Alberts, B.M.1
Barry, J.2
Bedinger, P.3
Formosa, T.4
Jongeneel, C.V.5
Kreuzer, K.N.6
-
49
-
-
30744446944
-
The control mechanism for lagging strand polymerase recycling during bacteriophage T4 DNA replication
-
Yang J., Nelson S.W., and Benkovic S.J. The control mechanism for lagging strand polymerase recycling during bacteriophage T4 DNA replication. Mol. Cell 21 (2006) 153-164
-
(2006)
Mol. Cell
, vol.21
, pp. 153-164
-
-
Yang, J.1
Nelson, S.W.2
Benkovic, S.J.3
-
50
-
-
8544278025
-
DNA polymerase fidelity: kinetics, structure, and checkpoints
-
Joyce C.M., and Benkovic S.J. DNA polymerase fidelity: kinetics, structure, and checkpoints. Biochemistry 43 (2004) 14317-14324
-
(2004)
Biochemistry
, vol.43
, pp. 14317-14324
-
-
Joyce, C.M.1
Benkovic, S.J.2
-
51
-
-
0037310493
-
Damage repair DNA polymerases Y
-
Yang W. Damage repair DNA polymerases Y. Curr. Opin. Struct. Biol. 13 (2003) 23-30
-
(2003)
Curr. Opin. Struct. Biol.
, vol.13
, pp. 23-30
-
-
Yang, W.1
-
52
-
-
21244506437
-
Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function
-
Prakash S., Johnson R.E., and Prakash L. Eukaryotic translesion synthesis DNA polymerases: specificity of structure and function. Annu. Rev. Biochem. 74 (2005) 317-353
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 317-353
-
-
Prakash, S.1
Johnson, R.E.2
Prakash, L.3
-
53
-
-
0025799903
-
Kinetic mechanism of DNA polymerase I (Klenow fragment): identification of a second conformational change and evaluation of the internal equilibrium constant
-
Dahlberg M.E., and Benkovic S.J. Kinetic mechanism of DNA polymerase I (Klenow fragment): identification of a second conformational change and evaluation of the internal equilibrium constant. Biochemistry 30 (1991) 4835-4843
-
(1991)
Biochemistry
, vol.30
, pp. 4835-4843
-
-
Dahlberg, M.E.1
Benkovic, S.J.2
-
54
-
-
0026785756
-
Minimal kinetic mechanism for misincorporation by DNA polymerase I (Klenow fragment)
-
Eger B.T., and Benkovic S.J. Minimal kinetic mechanism for misincorporation by DNA polymerase I (Klenow fragment). Biochemistry 31 (1992) 9227-9236
-
(1992)
Biochemistry
, vol.31
, pp. 9227-9236
-
-
Eger, B.T.1
Benkovic, S.J.2
-
55
-
-
0026033193
-
Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant
-
Patel S.S., Wong I., and Johnson K.A. Pre-steady-state kinetic analysis of processive DNA replication including complete characterization of an exonuclease-deficient mutant. Biochemistry 30 (1991) 511-525
-
(1991)
Biochemistry
, vol.30
, pp. 511-525
-
-
Patel, S.S.1
Wong, I.2
Johnson, K.A.3
-
56
-
-
0026026192
-
An induced-fit kinetic mechanism for DNA replication fidelity: direct measurement by single-turnover kinetics
-
Wong I., Patel S.S., and Johnson K.A. An induced-fit kinetic mechanism for DNA replication fidelity: direct measurement by single-turnover kinetics. Biochemistry 30 (1991) 526-537
-
(1991)
Biochemistry
, vol.30
, pp. 526-537
-
-
Wong, I.1
Patel, S.S.2
Johnson, K.A.3
-
57
-
-
48249095613
-
Single-molecule approach to molecular biology in living bacterial cells
-
Xie X.S., Choi P.J., Li G.W., Lee N.K., and Lia G. Single-molecule approach to molecular biology in living bacterial cells. Annu. Rev. Biophys. 37 (2008) 417-444
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 417-444
-
-
Xie, X.S.1
Choi, P.J.2
Li, G.W.3
Lee, N.K.4
Lia, G.5
-
58
-
-
33846472401
-
Single-molecule studies of complex systems: the replisome
-
van Oijen A.M. Single-molecule studies of complex systems: the replisome. Mol. Biosyst. 3 (2007) 117-125
-
(2007)
Mol. Biosyst.
, vol.3
, pp. 117-125
-
-
van Oijen, A.M.1
-
59
-
-
44449097780
-
Do-it-yourself guide: how to use the modern single-molecule toolkit
-
Walter N.G., Huang C.Y., Manzo A.J., and Sobhy M.A. Do-it-yourself guide: how to use the modern single-molecule toolkit. Nat. Methods 5 (2008) 475-489
-
(2008)
Nat. Methods
, vol.5
, pp. 475-489
-
-
Walter, N.G.1
Huang, C.Y.2
Manzo, A.J.3
Sobhy, M.A.4
-
60
-
-
44449134820
-
A practical guide to single-molecule FRET
-
Roy R., Hohng S., and Ha T. A practical guide to single-molecule FRET. Nat. Methods 5 (2008) 507-516
-
(2008)
Nat. Methods
, vol.5
, pp. 507-516
-
-
Roy, R.1
Hohng, S.2
Ha, T.3
-
61
-
-
0034594940
-
Single-molecule studies of the effect of template tension on T7 DNA polymerase activity
-
Wuite G.J.L., Smith S.B., Young M., Keller D., and Bustamante C. Single-molecule studies of the effect of template tension on T7 DNA polymerase activity. Nature 404 (2000) 103-106
-
(2000)
Nature
, vol.404
, pp. 103-106
-
-
Wuite, G.J.L.1
Smith, S.B.2
Young, M.3
Keller, D.4
Bustamante, C.5
-
62
-
-
0034710990
-
Replication by a single DNA polymerase of a stretched single-stranded DNA
-
Maier B., Bensimon D., and Croquette V. Replication by a single DNA polymerase of a stretched single-stranded DNA. Proc. Natl. Acad. Sci. U. S. A. 97 (2000) 12002-12007
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 12002-12007
-
-
Maier, B.1
Bensimon, D.2
Croquette, V.3
-
63
-
-
38049186506
-
Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism
-
Lionnet T., Spiering M.M., Benkovic S.J., Bensimon D., and Croquette V. Real-time observation of bacteriophage T4 gp41 helicase reveals an unwinding mechanism. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 19790-19795
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 19790-19795
-
-
Lionnet, T.1
Spiering, M.M.2
Benkovic, S.J.3
Bensimon, D.4
Croquette, V.5
-
64
-
-
33847156024
-
shrunk the DNA: DNA length as a probe for nucleic-acid enzyme activity
-
van Oijen A.M., and Honey I. shrunk the DNA: DNA length as a probe for nucleic-acid enzyme activity. Biopolymers 85 (2007) 144-153
-
(2007)
Biopolymers
, vol.85
, pp. 144-153
-
-
van Oijen, A.M.1
Honey, I.2
-
65
-
-
38849174361
-
Single-molecule studies of fork dynamics in Escherichia coli DNA replication
-
Tanner N.A., Hamdan S.M., Jergic S., Loscha K.V., Schaeffer P.M., Dixon N.E., and van Oijen A.M. Single-molecule studies of fork dynamics in Escherichia coli DNA replication. Nat. Struct. Mol. Biol. 15 (2008) 170-176
-
(2008)
Nat. Struct. Mol. Biol.
, vol.15
, pp. 170-176
-
-
Tanner, N.A.1
Hamdan, S.M.2
Jergic, S.3
Loscha, K.V.4
Schaeffer, P.M.5
Dixon, N.E.6
van Oijen, A.M.7
-
66
-
-
31844453991
-
DNA primase acts as a molecular brake in DNA replication
-
Lee J.B., Hite R.K., Hamdan S.M., Xie X.S., Richardson C.C., and van Oijen A.M. DNA primase acts as a molecular brake in DNA replication. Nature 439 (2006) 621-624
-
(2006)
Nature
, vol.439
, pp. 621-624
-
-
Lee, J.B.1
Hite, R.K.2
Hamdan, S.M.3
Xie, X.S.4
Richardson, C.C.5
van Oijen, A.M.6
-
67
-
-
34547740094
-
Dynamic DNA helicase-DNA polymerase interactions assure processive replication fork movement
-
Hamdan S.M., Johnson D.E., Tanner N.A., Lee J.B., Qimron U., Tabor S., van Oijen A.M., and Richardson C.C. Dynamic DNA helicase-DNA polymerase interactions assure processive replication fork movement. Mol. Cell 27 (2007) 539-549
-
(2007)
Mol. Cell
, vol.27
, pp. 539-549
-
-
Hamdan, S.M.1
Johnson, D.E.2
Tanner, N.A.3
Lee, J.B.4
Qimron, U.5
Tabor, S.6
van Oijen, A.M.7
Richardson, C.C.8
-
68
-
-
58249114971
-
Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis
-
Hamdan S.M., Loparo J.J., Takahashi M., Richardson C.C., and van Oijen A.M. Dynamics of DNA replication loops reveal temporal control of lagging-strand synthesis. Nature 457 (2009) 336-339
-
(2009)
Nature
, vol.457
, pp. 336-339
-
-
Hamdan, S.M.1
Loparo, J.J.2
Takahashi, M.3
Richardson, C.C.4
van Oijen, A.M.5
-
69
-
-
34250173432
-
Multiplexed single-molecule assay for enzymatic activity on flow-stretched DNA
-
Kim S., Blainey P.C., Schroeder C.M., and Xie X.S. Multiplexed single-molecule assay for enzymatic activity on flow-stretched DNA. Nat. Methods 4 (2007) 397-399
-
(2007)
Nat. Methods
, vol.4
, pp. 397-399
-
-
Kim, S.1
Blainey, P.C.2
Schroeder, C.M.3
Xie, X.S.4
-
70
-
-
14744278444
-
Assembly of the bacteriophage T4 primosome: single-molecule and ensemble studies
-
Zhang Z., Spiering M.M., Trakselis M.A., Ishmael F.T., Xi J., Benkovic S.J., and Hammes G.G. Assembly of the bacteriophage T4 primosome: single-molecule and ensemble studies. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 3254-3259
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 3254-3259
-
-
Zhang, Z.1
Spiering, M.M.2
Trakselis, M.A.3
Ishmael, F.T.4
Xi, J.5
Benkovic, S.J.6
Hammes, G.G.7
-
71
-
-
33745625118
-
Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: multiple pathways of holoenzyme formation
-
Smiley R.D., Zhuang Z., Benkovic S.J., and Hammes G.G. Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: multiple pathways of holoenzyme formation. Biochemistry 45 (2006) 7990-7997
-
(2006)
Biochemistry
, vol.45
, pp. 7990-7997
-
-
Smiley, R.D.1
Zhuang, Z.2
Benkovic, S.J.3
Hammes, G.G.4
-
72
-
-
43449118968
-
Dynamic binding orientations direct activity of HIV reverse transcriptase
-
Abbondanzieri E.A., Bokinsky G., Rausch J.W., Zhang J.X., Le Grice S.F., and Zhuang X. Dynamic binding orientations direct activity of HIV reverse transcriptase. Nature 453 (2008) 184-189
-
(2008)
Nature
, vol.453
, pp. 184-189
-
-
Abbondanzieri, E.A.1
Bokinsky, G.2
Rausch, J.W.3
Zhang, J.X.4
Le Grice, S.F.5
Zhuang, X.6
-
73
-
-
56449114709
-
Slide into action: dynamic shuttling of HIV reverse transcriptase on nucleic acid substrates
-
Liu S., Abbondanzieri E.A., Rausch J.W., Le Grice S.F., and Zhuang X. Slide into action: dynamic shuttling of HIV reverse transcriptase on nucleic acid substrates. Science 322 (2008) 1092-1097
-
(2008)
Science
, vol.322
, pp. 1092-1097
-
-
Liu, S.1
Abbondanzieri, E.A.2
Rausch, J.W.3
Le Grice, S.F.4
Zhuang, X.5
-
74
-
-
34547864244
-
Single-molecule and ensemble fluorescence assays for a functionally important conformational change in T7 DNA polymerase
-
Luo G., Wang M., Konigsberg W.H., and Xie X.S. Single-molecule and ensemble fluorescence assays for a functionally important conformational change in T7 DNA polymerase. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 12610-12615
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 12610-12615
-
-
Luo, G.1
Wang, M.2
Konigsberg, W.H.3
Xie, X.S.4
-
75
-
-
62549122138
-
Real-time single-molecule observation of rolling-circle DNA replication
-
Tanner N.A., Loparo J.J., Hamdan S.M., Jergic S., Dixon N.E., and van Oijen A.M. Real-time single-molecule observation of rolling-circle DNA replication. Nucleic Acids Res. 37 (2009) e27
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Tanner, N.A.1
Loparo, J.J.2
Hamdan, S.M.3
Jergic, S.4
Dixon, N.E.5
van Oijen, A.M.6
-
77
-
-
33845975656
-
Single molecule force spectroscopy of salt-dependent bacteriophage T7 gene 2.5 protein binding to single-stranded DNA
-
Shokri L., Marintcheva B., Richardson C.C., Rouzina I., and Williams M.C. Single molecule force spectroscopy of salt-dependent bacteriophage T7 gene 2.5 protein binding to single-stranded DNA. J. Biol. Chem. 281 (2006) 38689-38696
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 38689-38696
-
-
Shokri, L.1
Marintcheva, B.2
Richardson, C.C.3
Rouzina, I.4
Williams, M.C.5
-
78
-
-
1042298812
-
Mechanical measurement of single-molecule binding rates: kinetics of DNA helix-destabilization by T4 gene 32 protein
-
Pant K., Karpel R.L., Rouzina I., and Williams M.C. Mechanical measurement of single-molecule binding rates: kinetics of DNA helix-destabilization by T4 gene 32 protein. J. Mol. Biol. 336 (2004) 851-870
-
(2004)
J. Mol. Biol.
, vol.336
, pp. 851-870
-
-
Pant, K.1
Karpel, R.L.2
Rouzina, I.3
Williams, M.C.4
-
79
-
-
0344406718
-
Kinetic regulation of single DNA molecule denaturation by T4 gene 32 protein structural domains
-
Pant K., Karpel R.L., and Williams M.C. Kinetic regulation of single DNA molecule denaturation by T4 gene 32 protein structural domains. J. Mol. Biol. 327 (2003) 571-578
-
(2003)
J. Mol. Biol.
, vol.327
, pp. 571-578
-
-
Pant, K.1
Karpel, R.L.2
Williams, M.C.3
-
80
-
-
18844364649
-
Salt dependent binding of T4 gene 32 protein to single and double-stranded DNA: single molecule force spectroscopy measurements
-
Pant K., Karpel R.L., Rouzina I., and Williams M.C. Salt dependent binding of T4 gene 32 protein to single and double-stranded DNA: single molecule force spectroscopy measurements. J. Mol. Biol. 349 (2005) 317-330
-
(2005)
J. Mol. Biol.
, vol.349
, pp. 317-330
-
-
Pant, K.1
Karpel, R.L.2
Rouzina, I.3
Williams, M.C.4
-
81
-
-
0036009140
-
Thermodynamics of DNA interactions from single molecule stretching experiments
-
Williams M.C., Rouzina I., and Bloomfield V.A. Thermodynamics of DNA interactions from single molecule stretching experiments. Acc. Chem. Res. 35 (2002) 159-166
-
(2002)
Acc. Chem. Res.
, vol.35
, pp. 159-166
-
-
Williams, M.C.1
Rouzina, I.2
Bloomfield, V.A.3
-
82
-
-
55249119565
-
Kinetics and thermodynamics of salt-dependent T7 gene 2.5 protein binding to single- and double-stranded DNA
-
Shokri L., Marintcheva B., Eldib M., Hanke A., Rouzina I., and Williams M.C. Kinetics and thermodynamics of salt-dependent T7 gene 2.5 protein binding to single- and double-stranded DNA. Nucleic Acids Res. 36 (2008) 5668-5677
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 5668-5677
-
-
Shokri, L.1
Marintcheva, B.2
Eldib, M.3
Hanke, A.4
Rouzina, I.5
Williams, M.C.6
-
83
-
-
0030024985
-
Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules
-
Smith S.B., Cui Y., and Bustamante C. Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules. Science 271 (1996) 795-799
-
(1996)
Science
, vol.271
, pp. 795-799
-
-
Smith, S.B.1
Cui, Y.2
Bustamante, C.3
-
85
-
-
0023657032
-
Kinetic mechanism of DNA polymerase I (Klenow)
-
Kuchta R.D., Mizrahi V., Benkovic P.A., Johnson K.A., and Benkovic S.J. Kinetic mechanism of DNA polymerase I (Klenow). Biochemistry 26 (1987) 8410-8417
-
(1987)
Biochemistry
, vol.26
, pp. 8410-8417
-
-
Kuchta, R.D.1
Mizrahi, V.2
Benkovic, P.A.3
Johnson, K.A.4
Benkovic, S.J.5
-
86
-
-
0032535528
-
Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation
-
Li Y., Korolev S., and Waksman G. Crystal structures of open and closed forms of binary and ternary complexes of the large fragment of Thermus aquaticus DNA polymerase I: structural basis for nucleotide incorporation. EMBO J. 17 (1998) 7514-7525
-
(1998)
EMBO J.
, vol.17
, pp. 7514-7525
-
-
Li, Y.1
Korolev, S.2
Waksman, G.3
-
87
-
-
0032573488
-
Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance
-
Huang H., Chopra R., Verdine G.L., and Harrison S.C. Structure of a covalently trapped catalytic complex of HIV-1 reverse transcriptase: implications for drug resistance. Science 282 (1998) 1669-1675
-
(1998)
Science
, vol.282
, pp. 1669-1675
-
-
Huang, H.1
Chopra, R.2
Verdine, G.L.3
Harrison, S.C.4
-
88
-
-
0028049441
-
Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP
-
Pelletier H., Sawaya M.R., Kumar A., Wilson S.H., and Kraut J. Structures of ternary complexes of rat DNA polymerase beta, a DNA template-primer, and ddCTP. Science 264 (1994) 1891-1903
-
(1994)
Science
, vol.264
, pp. 1891-1903
-
-
Pelletier, H.1
Sawaya, M.R.2
Kumar, A.3
Wilson, S.H.4
Kraut, J.5
-
89
-
-
0037388383
-
Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations
-
Johnson S.J., Taylor J.S., and Beese L.S. Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations. Proc. Natl. Acad. Sci. U. S. A. 100 (2003) 3895-3900
-
(2003)
Proc. Natl. Acad. Sci. U. S. A.
, vol.100
, pp. 3895-3900
-
-
Johnson, S.J.1
Taylor, J.S.2
Beese, L.S.3
-
90
-
-
23044492225
-
Motions of the fingers subdomain of klentaq1 are fast and not rate limiting: implications for the molecular basis of fidelity in DNA polymerases
-
Rothwell P.J., Mitaksov V., and Waksman G. Motions of the fingers subdomain of klentaq1 are fast and not rate limiting: implications for the molecular basis of fidelity in DNA polymerases. Mol. Cell 19 (2005) 345-355
-
(2005)
Mol. Cell
, vol.19
, pp. 345-355
-
-
Rothwell, P.J.1
Mitaksov, V.2
Waksman, G.3
-
91
-
-
0041823551
-
Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase I (Klenow fragment)
-
Purohit V., Grindley N.D., and Joyce C.M. Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase I (Klenow fragment). Biochemistry 42 (2003) 10200-10211
-
(2003)
Biochemistry
, vol.42
, pp. 10200-10211
-
-
Purohit, V.1
Grindley, N.D.2
Joyce, C.M.3
-
92
-
-
0037125947
-
Use of 2-aminopurine and tryptophan fluorescence as probes in kinetic analyses of DNA polymerase beta
-
Dunlap C.A., and Tsai M.D. Use of 2-aminopurine and tryptophan fluorescence as probes in kinetic analyses of DNA polymerase beta. Biochemistry 41 (2002) 11226-11235
-
(2002)
Biochemistry
, vol.41
, pp. 11226-11235
-
-
Dunlap, C.A.1
Tsai, M.D.2
-
93
-
-
0037174863
-
Reha-Krantz, Using 2-aminopurine fluorescence to measure incorporation of incorrect nucleotides by wild type and mutant bacteriophage T4 DNA polymerases
-
Fidalgo E., da Silva S.S., and Mandal L.J. Reha-Krantz, Using 2-aminopurine fluorescence to measure incorporation of incorrect nucleotides by wild type and mutant bacteriophage T4 DNA polymerases. J. Biol. Chem. 277 (2002) 40640-40649
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 40640-40649
-
-
Fidalgo, E.1
da Silva, S.S.2
Mandal, L.J.3
-
94
-
-
33747462891
-
A new paradigm for DNA polymerase specificity
-
Tsai Y.C., and Johnson K.A. A new paradigm for DNA polymerase specificity. Biochemistry 45 (2006) 9675-9687
-
(2006)
Biochemistry
, vol.45
, pp. 9675-9687
-
-
Tsai, Y.C.1
Johnson, K.A.2
-
98
-
-
0032540905
-
A sequencing method based on real-time pyrophosphate
-
365
-
Ronaghi M., Uhlen M., and Nyren P. A sequencing method based on real-time pyrophosphate. Science 281 (1998) 363 365
-
(1998)
Science
, vol.281
, pp. 363
-
-
Ronaghi, M.1
Uhlen, M.2
Nyren, P.3
-
99
-
-
24644462173
-
Accurate multiplex polony sequencing of an evolved bacterial genome
-
Shendure J., Porreca G.J., Reppas N.B., Lin X., McCutcheon J.P., Rosenbaum A.M., Wang M.D., Zhang K., Mitra R.D., and Church G.M. Accurate multiplex polony sequencing of an evolved bacterial genome. Science 309 (2005) 1728-1732
-
(2005)
Science
, vol.309
, pp. 1728-1732
-
-
Shendure, J.1
Porreca, G.J.2
Reppas, N.B.3
Lin, X.4
McCutcheon, J.P.5
Rosenbaum, A.M.6
Wang, M.D.7
Zhang, K.8
Mitra, R.D.9
Church, G.M.10
-
100
-
-
0037474152
-
Zero-mode waveguides for single-molecule analysis at high concentrations
-
Levene M.J., Korlach J., Turner S.W., Foquet M., Craighead H.G., and Webb W.W. Zero-mode waveguides for single-molecule analysis at high concentrations. Science 299 (2003) 682-686
-
(2003)
Science
, vol.299
, pp. 682-686
-
-
Levene, M.J.1
Korlach, J.2
Turner, S.W.3
Foquet, M.4
Craighead, H.G.5
Webb, W.W.6
-
101
-
-
58149234737
-
Real-time DNA sequencing from single polymerase molecules
-
Eid J., Fehr A., Gray J., Luong K., Lyle J., Otto G., Peluso P., Rank D., Baybayan P., Bettman B., Bibillo A., Bjornson K., Chaudhuri B., Christians F., Cicero R., Clark S., Dalal R., Dewinter A., Dixon J., Foquet M., Gaertner A., Hardenbol P., Heiner C., Hester K., Holden D., Kearns G., Kong X., Kuse R., Lacroix Y., Lin S., Lundquist P., Ma C., Marks P., Maxham M., Murphy D., Park I., Pham T., Phillips M., Roy J., Sebra R., Shen G., Sorenson J., Tomaney A., Travers K., Trulson M., Vieceli J., Wegener J., Wu D., Yang A., Zaccarin D., Zhao P., Zhong F., Korlach J., and Turner S. Real-time DNA sequencing from single polymerase molecules. Science 323 (2009) 133-138
-
(2009)
Science
, vol.323
, pp. 133-138
-
-
Eid, J.1
Fehr, A.2
Gray, J.3
Luong, K.4
Lyle, J.5
Otto, G.6
Peluso, P.7
Rank, D.8
Baybayan, P.9
Bettman, B.10
Bibillo, A.11
Bjornson, K.12
Chaudhuri, B.13
Christians, F.14
Cicero, R.15
Clark, S.16
Dalal, R.17
Dewinter, A.18
Dixon, J.19
Foquet, M.20
Gaertner, A.21
Hardenbol, P.22
Heiner, C.23
Hester, K.24
Holden, D.25
Kearns, G.26
Kong, X.27
Kuse, R.28
Lacroix, Y.29
Lin, S.30
Lundquist, P.31
Ma, C.32
Marks, P.33
Maxham, M.34
Murphy, D.35
Park, I.36
Pham, T.37
Phillips, M.38
Roy, J.39
Sebra, R.40
Shen, G.41
Sorenson, J.42
Tomaney, A.43
Travers, K.44
Trulson, M.45
Vieceli, J.46
Wegener, J.47
Wu, D.48
Yang, A.49
Zaccarin, D.50
Zhao, P.51
Zhong, F.52
Korlach, J.53
Turner, S.54
more..
-
102
-
-
0017158699
-
Regulation of gene 32 expression during bacteriophage T4 infection of Escherichia coli
-
Gold L., O'Farrell P.Z., and Russel M. Regulation of gene 32 expression during bacteriophage T4 infection of Escherichia coli. J. Biol. Chem. 251 (1976) 7251-7262
-
(1976)
J. Biol. Chem.
, vol.251
, pp. 7251-7262
-
-
Gold, L.1
O'Farrell, P.Z.2
Russel, M.3
-
103
-
-
34250766751
-
Single-molecule studies reveal dynamics of DNA unwinding by the ring-shaped T7 helicase
-
Johnson D.S., Bai L., Smith B.Y., Patel S.S., and Wang M.D. Single-molecule studies reveal dynamics of DNA unwinding by the ring-shaped T7 helicase. Cell 129 (2007) 1299-1309
-
(2007)
Cell
, vol.129
, pp. 1299-1309
-
-
Johnson, D.S.1
Bai, L.2
Smith, B.Y.3
Patel, S.S.4
Wang, M.D.5
-
104
-
-
2442513338
-
The DNA-unwinding mechanism of the ring helicase of bacteriophage T7
-
Jeong Y.J., Levin M.K., and Patel S.S. The DNA-unwinding mechanism of the ring helicase of bacteriophage T7. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 7264-7269
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 7264-7269
-
-
Jeong, Y.J.1
Levin, M.K.2
Patel, S.S.3
-
105
-
-
41349092240
-
Opening of nucleic-acid double strands by helicases: active versus passive opening
-
Betterton M.D., and Julicher F. Opening of nucleic-acid double strands by helicases: active versus passive opening. Phys. Rev. 71 (2005) 011904
-
(2005)
Phys. Rev.
, vol.71
, pp. 011904
-
-
Betterton, M.D.1
Julicher, F.2
-
106
-
-
0039251501
-
Simultaneous interactions of bacteriophage T4 DNA replication proteins gp59 and gp32 with single-stranded (ss) DNA. Co-modulation of ssDNA binding activities in a DNA helicase assembly intermediate
-
Lefebvre S.D., Wong M.L., and Morrical S.W. Simultaneous interactions of bacteriophage T4 DNA replication proteins gp59 and gp32 with single-stranded (ss) DNA. Co-modulation of ssDNA binding activities in a DNA helicase assembly intermediate. J. Biol. Chem. 274 (1999) 22830-22838
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 22830-22838
-
-
Lefebvre, S.D.1
Wong, M.L.2
Morrical, S.W.3
-
107
-
-
1842478244
-
Bacteriophage T4 32 protein is required for helicase-dependent leading strand synthesis when the helicase is loaded by the T4 59 helicase-loading protein
-
Jones C.E., Mueser T.C., and Nossal N.G. Bacteriophage T4 32 protein is required for helicase-dependent leading strand synthesis when the helicase is loaded by the T4 59 helicase-loading protein. J. Biol. Chem. 279 (2004) 12067-12075
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 12067-12075
-
-
Jones, C.E.1
Mueser, T.C.2
Nossal, N.G.3
-
108
-
-
0033564238
-
Sliding clamp of the bacteriophage T4 polymerase has open and closed subunit interfaces in solution
-
Alley S.C., Shier V.K., Abel-Santos E., Sexton D.J., Soumillion P., and Benkovic S.J. Sliding clamp of the bacteriophage T4 polymerase has open and closed subunit interfaces in solution. Biochemistry 38 (1999) 7696-7709
-
(1999)
Biochemistry
, vol.38
, pp. 7696-7709
-
-
Alley, S.C.1
Shier, V.K.2
Abel-Santos, E.3
Sexton, D.J.4
Soumillion, P.5
Benkovic, S.J.6
-
109
-
-
4944231970
-
On the solution structure of the T4 sliding clamp (gp45)
-
Millar D., Trakselis M.A., and Benkovic S.J. On the solution structure of the T4 sliding clamp (gp45). Biochemistry 43 (2004) 12723-12727
-
(2004)
Biochemistry
, vol.43
, pp. 12723-12727
-
-
Millar, D.1
Trakselis, M.A.2
Benkovic, S.J.3
-
110
-
-
0029120326
-
Multiple initiation mechanisms adapt phage T4 DNA replication to physiological changes during T4's development
-
Mosig G., Colowick N., Gruidl M.E., Chang A., and Harvey A.J. Multiple initiation mechanisms adapt phage T4 DNA replication to physiological changes during T4's development. FEMS Microbiol. Rev. 17 (1995) 83-98
-
(1995)
FEMS Microbiol. Rev.
, vol.17
, pp. 83-98
-
-
Mosig, G.1
Colowick, N.2
Gruidl, M.E.3
Chang, A.4
Harvey, A.J.5
-
111
-
-
19644399070
-
DNA synthesis provides the driving force to accelerate DNA unwinding by a helicase
-
Stano N.M., Jeong Y.J., Donmez I., Tummalapalli P., Levin M.K., and Patel S.S. DNA synthesis provides the driving force to accelerate DNA unwinding by a helicase. Nature 435 (2005) 370-373
-
(2005)
Nature
, vol.435
, pp. 370-373
-
-
Stano, N.M.1
Jeong, Y.J.2
Donmez, I.3
Tummalapalli, P.4
Levin, M.K.5
Patel, S.S.6
-
112
-
-
0023665251
-
Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7
-
Tabor S., Huber H.E., and Richardson C.C. Escherichia coli thioredoxin confers processivity on the DNA polymerase activity of the gene 5 protein of bacteriophage T7. J. Biol. Chem. 262 (1987) 16212-16223
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 16212-16223
-
-
Tabor, S.1
Huber, H.E.2
Richardson, C.C.3
-
113
-
-
17044382971
-
A unique loop in T7 DNA polymerase mediates the binding of helicase-primase, DNA binding protein, and processivity factor
-
Hamdan S.M., Marintcheva B., Cook T., Lee S.J., Tabor S., and Richardson C.C. A unique loop in T7 DNA polymerase mediates the binding of helicase-primase, DNA binding protein, and processivity factor. Proc. Natl. Acad. Sci. U. S. A. 102 (2005) 5096-5101
-
(2005)
Proc. Natl. Acad. Sci. U. S. A.
, vol.102
, pp. 5096-5101
-
-
Hamdan, S.M.1
Marintcheva, B.2
Cook, T.3
Lee, S.J.4
Tabor, S.5
Richardson, C.C.6
-
114
-
-
0033544950
-
Interaction of bacteriophage T7 gene 4 primase with its template recognition site
-
Frick D.N., and Richardson C.C. Interaction of bacteriophage T7 gene 4 primase with its template recognition site. J. Biol. Chem. 274 (1999) 35889-35898
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 35889-35898
-
-
Frick, D.N.1
Richardson, C.C.2
-
115
-
-
33748757330
-
The C-terminal residues of bacteriophage T7 gene 4 helicase-primase coordinate helicase and DNA polymerase activities
-
Lee S.J., Marintcheva B., Hamdan S.M., and Richardson C.C. The C-terminal residues of bacteriophage T7 gene 4 helicase-primase coordinate helicase and DNA polymerase activities. J. Biol. Chem. 281 (2006) 25841-25849
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 25841-25849
-
-
Lee, S.J.1
Marintcheva, B.2
Hamdan, S.M.3
Richardson, C.C.4
-
116
-
-
0030739376
-
The acidic carboxyl terminus of the bacteriophage T7 gene 4 helicase/primase interacts with T7 DNA polymerase
-
Notarnicola S.M., Mulcahy H.L., Lee J., and Richardson C.C. The acidic carboxyl terminus of the bacteriophage T7 gene 4 helicase/primase interacts with T7 DNA polymerase. J. Biol. Chem. 272 (1997) 18425-18433
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 18425-18433
-
-
Notarnicola, S.M.1
Mulcahy, H.L.2
Lee, J.3
Richardson, C.C.4
-
117
-
-
21844446871
-
The oligomeric T4 primase is the functional form during replication
-
Yang J., Xi J., Zhuang Z., and Benkovic S.J. The oligomeric T4 primase is the functional form during replication. J. Biol. Chem. 280 (2005) 25416-25423
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 25416-25423
-
-
Yang, J.1
Xi, J.2
Zhuang, Z.3
Benkovic, S.J.4
-
118
-
-
0347993077
-
Mechanism and stoichiometry of interaction of DnaG primase with DnaB helicase of Escherichia coli in RNA primer synthesis
-
Mitkova A.V., Khopde S.M., and Biswas S.B. Mechanism and stoichiometry of interaction of DnaG primase with DnaB helicase of Escherichia coli in RNA primer synthesis. J. Biol. Chem. 278 (2003) 52253-52261
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 52253-52261
-
-
Mitkova, A.V.1
Khopde, S.M.2
Biswas, S.B.3
-
119
-
-
0019428380
-
Size classes of products synthesized processively by DNA polymerase III and DNA polymerase III holoenzyme of Escherichia coli
-
Fay P.J., Johanson K.O., McHenry C.S., and Bambara R.A. Size classes of products synthesized processively by DNA polymerase III and DNA polymerase III holoenzyme of Escherichia coli. J. Biol. Chem. 256 (1981) 976-983
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 976-983
-
-
Fay, P.J.1
Johanson, K.O.2
McHenry, C.S.3
Bambara, R.A.4
-
120
-
-
0023646050
-
The Escherichia coli preprimosome and DNA B helicase can form replication forks that move at the same rate
-
Mok M., and Marians K.J. The Escherichia coli preprimosome and DNA B helicase can form replication forks that move at the same rate. J. Biol. Chem. 262 (1987) 16644-16654
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 16644-16654
-
-
Mok, M.1
Marians, K.J.2
-
121
-
-
0025122284
-
Processive replication is contingent on the exonuclease subunit of DNA polymerase III holoenzyme
-
Studwell P.S., and O'Donnell M. Processive replication is contingent on the exonuclease subunit of DNA polymerase III holoenzyme. J. Biol. Chem. 265 (1990) 1171-1178
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 1171-1178
-
-
Studwell, P.S.1
O'Donnell, M.2
-
122
-
-
22244478079
-
Cellular DNA replicases: components and dynamics at the replication fork
-
Johnson A., and O'Donnell M. Cellular DNA replicases: components and dynamics at the replication fork. Annu. Rev. Biochem. 74 (2005) 283-315
-
(2005)
Annu. Rev. Biochem.
, vol.74
, pp. 283-315
-
-
Johnson, A.1
O'Donnell, M.2
-
123
-
-
47649091426
-
Cutting the forest to see a single tree?
-
van Oijen A.M. Cutting the forest to see a single tree?. Nat. Chem. Biol. 4 (2008) 440-443
-
(2008)
Nat. Chem. Biol.
, vol.4
, pp. 440-443
-
-
van Oijen, A.M.1
-
124
-
-
0021112580
-
A preformed, topologically stable replication fork. Characterization of leading strand DNA synthesis catalyzed by T7 DNA polymerase and T7 gene 4 protein
-
Lechner R.L., and Richardson C.C. A preformed, topologically stable replication fork. Characterization of leading strand DNA synthesis catalyzed by T7 DNA polymerase and T7 gene 4 protein. J. Biol. Chem. 258 (1983) 11185-11196
-
(1983)
J. Biol. Chem.
, vol.258
, pp. 11185-11196
-
-
Lechner, R.L.1
Richardson, C.C.2
-
125
-
-
17544363810
-
Stoichiometry and DNA unwinding by the bacteriophage T4 41:59 helicase
-
Raney K.D., Carver T.E., and Benkovic S.J. Stoichiometry and DNA unwinding by the bacteriophage T4 41:59 helicase. J. Biol. Chem. 271 (1996) 14074-14081
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 14074-14081
-
-
Raney, K.D.1
Carver, T.E.2
Benkovic, S.J.3
-
126
-
-
0024604814
-
Characterization of the bacteriophage T4 gene 41 DNA helicase
-
Richardson R.W., and Nossal N.G. Characterization of the bacteriophage T4 gene 41 DNA helicase. J. Biol. Chem. 264 (1989) 4725-4731
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 4725-4731
-
-
Richardson, R.W.1
Nossal, N.G.2
-
127
-
-
0021685439
-
T4 DNA polymerase. Rates and processivity on single-stranded DNA templates
-
Mace D.C., and Alberts B.M. T4 DNA polymerase. Rates and processivity on single-stranded DNA templates. J. Mol. Biol. 177 (1984) 295-311
-
(1984)
J. Mol. Biol.
, vol.177
, pp. 295-311
-
-
Mace, D.C.1
Alberts, B.M.2
-
128
-
-
0024362231
-
The bacteriophage T4 DNA replication fork. Only DNA helicase is required for leading strand DNA synthesis by the DNA polymerase holoenzyme
-
Cha T.A., and Alberts B.M. The bacteriophage T4 DNA replication fork. Only DNA helicase is required for leading strand DNA synthesis by the DNA polymerase holoenzyme. J. Biol. Chem. 264 (1989) 12220-12225
-
(1989)
J. Biol. Chem.
, vol.264
, pp. 12220-12225
-
-
Cha, T.A.1
Alberts, B.M.2
-
129
-
-
4644261530
-
Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: quantitative analysis of the rate of the dsDNA unwinding, processivity and kinetic step-size of the Escherichia coli DnaB helicase using rapid quench-flow method
-
Galletto R., Jezewska M.J., and Bujalowski W. Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: quantitative analysis of the rate of the dsDNA unwinding, processivity and kinetic step-size of the Escherichia coli DnaB helicase using rapid quench-flow method. J. Mol. Biol. 343 (2004) 83-99
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 83-99
-
-
Galletto, R.1
Jezewska, M.J.2
Bujalowski, W.3
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