-
1
-
-
0037832291
-
Stretching DNA and RNA to probe their interactions with proteins
-
Allemand, J. F., Bensimon, D., and Croquette, V. (2003) Stretching DNA and RNA to probe their interactions with proteins, Curr. Opin. Struct. Biol. 13, 266-274.
-
(2003)
Curr. Opin. Struct. Biol
, vol.13
, pp. 266-274
-
-
Allemand, J.F.1
Bensimon, D.2
Croquette, V.3
-
3
-
-
33646937406
-
Single-molecule fluorescence studies of protein folding and conformational dynamics
-
Michalet, X., Weiss, S., and Jager, M. (2006) Single-molecule fluorescence studies of protein folding and conformational dynamics. Chem. Rev. 106, 1785-1813.
-
(2006)
Chem. Rev
, vol.106
, pp. 1785-1813
-
-
Michalet, X.1
Weiss, S.2
Jager, M.3
-
4
-
-
1242271244
-
An overview of the biophysical applications of atomic force microscopy
-
Santos, N. C., and Castanho, M. A. (2004) An overview of the biophysical applications of atomic force microscopy, Biophys. Chem. 107, 133-149.
-
(2004)
Biophys. Chem
, vol.107
, pp. 133-149
-
-
Santos, N.C.1
Castanho, M.A.2
-
5
-
-
2942521182
-
Single-molecule manipulation of nucleic acids
-
Bockelmann, U. (2004) Single-molecule manipulation of nucleic acids, Curr. Opin. Struct. Biol. 14, 368-373.
-
(2004)
Curr. Opin. Struct. Biol
, vol.14
, pp. 368-373
-
-
Bockelmann, U.1
-
6
-
-
3943069115
-
Mechanical processes in biochemistry
-
Bustamante, C., Chemla, Y. R., Forde, N. R., and Izhaky, D. (2004) Mechanical processes in biochemistry, Annu. Rev. Biochem. 73, 705-748.
-
(2004)
Annu. Rev. Biochem
, vol.73
, pp. 705-748
-
-
Bustamante, C.1
Chemla, Y.R.2
Forde, N.R.3
Izhaky, D.4
-
7
-
-
1842583976
-
Structural dynamics and processing of nucleic acids revealed by single-molecule spectroscopy
-
Ha, T. (2004) Structural dynamics and processing of nucleic acids revealed by single-molecule spectroscopy. Biochemistry 43, 4055-4063.
-
(2004)
Biochemistry
, vol.43
, pp. 4055-4063
-
-
Ha, T.1
-
10
-
-
0036284131
-
An automated two-dimensional optical force clamp for single molecule studies
-
Lang, M. J., Asbury, C. L., Shaevitz, J. W., and Block, S. M. (2002) An automated two-dimensional optical force clamp for single molecule studies. Biophys. J. 83, 491-501.
-
(2002)
Biophys. J
, vol.83
, pp. 491-501
-
-
Lang, M.J.1
Asbury, C.L.2
Shaevitz, J.W.3
Block, S.M.4
-
11
-
-
28544432440
-
Direct observation of base-pair stepping by RNA polymerase
-
Abbondanzieri, E. A., Greenleaf, W. J., Shaevitz, J. W., Landick, R., and Block, S. M. (2005) Direct observation of base-pair stepping by RNA polymerase, Nature 438, 460-465.
-
(2005)
Nature
, vol.438
, pp. 460-465
-
-
Abbondanzieri, E.A.1
Greenleaf, W.J.2
Shaevitz, J.W.3
Landick, R.4
Block, S.M.5
-
12
-
-
33745162550
-
Differential detection of dual traps improves the spatial resolution of optical tweezers
-
Moffitt, J. R., Chemla, Y. R., Izhaky, D., and Bustamante, C. (2006) Differential detection of dual traps improves the spatial resolution of optical tweezers, Proc. Natl. Acad. Sci. U.S.A. 103, 9006-9011.
-
(2006)
Proc. Natl. Acad. Sci. U.S.A
, vol.103
, pp. 9006-9011
-
-
Moffitt, J.R.1
Chemla, Y.R.2
Izhaky, D.3
Bustamante, C.4
-
13
-
-
13444306206
-
Protein unfolding and refolding under force: Methodologies for nanomechanics
-
Samori, B., Zuccheri, G., and Baschieri, R. (2005) Protein unfolding and refolding under force: methodologies for nanomechanics, ChemPhysChem 6, 29-34.
-
(2005)
ChemPhysChem
, vol.6
, pp. 29-34
-
-
Samori, B.1
Zuccheri, G.2
Baschieri, R.3
-
14
-
-
0033765113
-
Functional modulation of Escherichia coli RNA polymerase
-
Ishihama, A. (2000) Functional modulation of Escherichia coli RNA polymerase, Annu. Rev. Microbiol. 54, 499-518.
-
(2000)
Annu. Rev. Microbiol
, vol.54
, pp. 499-518
-
-
Ishihama, A.1
-
15
-
-
33745041963
-
Single-molecule analysis of RNA polymerase transcription
-
Bai, L., Santangelo, T. J., and Wang, M. D. (2006) Single-molecule analysis of RNA polymerase transcription, Annu. Rev. Biophys. Biomol. Struct. 35, 343-360.
-
(2006)
Annu. Rev. Biophys. Biomol. Struct
, vol.35
, pp. 343-360
-
-
Bai, L.1
Santangelo, T.J.2
Wang, M.D.3
-
16
-
-
27644579628
-
Retention of transcription initiation factor sigma70 in transcription elongation: Single-molecule analysis
-
Kapanidis, A. N., Margeat, E., Laurence, T. A., Doose, S., Ho, S. O., Mukhopadhyay, J., Kortkhonjia, E., Mekler, V., Ebright, R. H., and Weiss, S. (2005) Retention of transcription initiation factor sigma70 in transcription elongation: single-molecule analysis, Mol. Cell 20, 347-356.
-
(2005)
Mol. Cell
, vol.20
, pp. 347-356
-
-
Kapanidis, A.N.1
Margeat, E.2
Laurence, T.A.3
Doose, S.4
Ho, S.O.5
Mukhopadhyay, J.6
Kortkhonjia, E.7
Mekler, V.8
Ebright, R.H.9
Weiss, S.10
-
17
-
-
33744981369
-
Sepuence-resolved detection of pausing by single RNA polymerase molecules
-
Herbert, K. M., La Porta, A., Wong, B. J., Mooney, R. A., Neuman, K. C., Landick, R., and Block, S. M. (2006) Sepuence-resolved detection of pausing by single RNA polymerase molecules, Cell 125, 1083-1094.
-
(2006)
Cell
, vol.125
, pp. 1083-1094
-
-
Herbert, K.M.1
La Porta, A.2
Wong, B.J.3
Mooney, R.A.4
Neuman, K.C.5
Landick, R.6
Block, S.M.7
-
18
-
-
0346258014
-
Backtracking by single RNA polymerase molecules observed at near-base-pair resolution
-
Shaevitr, J. W., Abbondanzieri, E. A., Landick, R., and Block, S. M. (2003) Backtracking by single RNA polymerase molecules observed at near-base-pair resolution. Nature 426, 684-687.
-
(2003)
Nature
, vol.426
, pp. 684-687
-
-
Shaevitr, J.W.1
Abbondanzieri, E.A.2
Landick, R.3
Block, S.M.4
-
19
-
-
0037109057
-
Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior
-
Adelman, K., La Porta, A., Santangelo, T. J., Lis, J. T., Roberts, J. W., and Wang, M. D. (2002) Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior, Proc. Natl. Acad. Sci U.S.A. 99, 13538-13543.
-
(2002)
Proc. Natl. Acad. Sci U.S.A
, vol.99
, pp. 13538-13543
-
-
Adelman, K.1
La Porta, A.2
Santangelo, T.J.3
Lis, J.T.4
Roberts, J.W.5
Wang, M.D.6
-
20
-
-
0345047725
-
Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking
-
Neuman, K. C., Abbondanzieri, E. A., Landick, R., Gelles, J., and Block, S. M. (2003) Ubiquitous transcriptional pausing is independent of RNA polymerase backtracking, Cell 115, 437-447.
-
(2003)
Cell
, vol.115
, pp. 437-447
-
-
Neuman, K.C.1
Abbondanzieri, E.A.2
Landick, R.3
Gelles, J.4
Block, S.M.5
-
21
-
-
31544450256
-
Full-length myosin VI dimerizes and moves processively along actin filaments upon monomer clustering
-
Park, H., Ramamurthy, B., Travaglia, M., Safer, D., Chen, L. Q., Franzini-Armstrong, C., Selvin, P. R., and Sweeney, H. L. (2006) Full-length myosin VI dimerizes and moves processively along actin filaments upon monomer clustering, Mol. Cell 21, 331-336.
-
(2006)
Mol. Cell
, vol.21
, pp. 331-336
-
-
Park, H.1
Ramamurthy, B.2
Travaglia, M.3
Safer, D.4
Chen, L.Q.5
Franzini-Armstrong, C.6
Selvin, P.R.7
Sweeney, H.L.8
-
22
-
-
0037832404
-
Myosin V walks hand-over-hand: Single fluorophore imaging with 1.5-nm localization
-
Yildiz, A., Forkey, J. N., McKinney, S. A., Ha, T., Goldman, Y. E., and Selvin, P. R. (2003) Myosin V walks hand-over-hand: single fluorophore imaging with 1.5-nm localization, Science 300, 2061-2065.
-
(2003)
Science
, vol.300
, pp. 2061-2065
-
-
Yildiz, A.1
Forkey, J.N.2
McKinney, S.A.3
Ha, T.4
Goldman, Y.E.5
Selvin, P.R.6
-
23
-
-
4444364789
-
Myosin VI steps via a hand-over-hand mechanism with its lever arm undergoing fluctuations when attached to actin
-
Yildiz, A., Park, H., Safer, D., Yang, Z., Chen, L. Q., Selvin, P. R., and Sweeney, H. L. (2004) Myosin VI steps via a hand-over-hand mechanism with its lever arm undergoing fluctuations when attached to actin, J. Biol. Chem. 279, 37223-37226.
-
(2004)
J. Biol. Chem
, vol.279
, pp. 37223-37226
-
-
Yildiz, A.1
Park, H.2
Safer, D.3
Yang, Z.4
Chen, L.Q.5
Selvin, P.R.6
Sweeney, H.L.7
-
24
-
-
4344689965
-
Myosin VI walks hand-over-hand along actin
-
Okten, Z., Churchman, L. S., Rock, R. S., and Spudich, J. A. (2004) Myosin VI walks hand-over-hand along actin, Nat. Struct. Mol. Biol. 11, 884-887.
-
(2004)
Nat. Struct. Mol. Biol
, vol.11
, pp. 884-887
-
-
Okten, Z.1
Churchman, L.S.2
Rock, R.S.3
Spudich, J.A.4
-
25
-
-
0035824868
-
Native-state energetics of a thermostabilized variant of ribonuclease HI
-
Goedken, E. R., and Marqusee, S. (2001) Native-state energetics of a thermostabilized variant of ribonuclease HI, J. Mol. Biol. 314, 863-871.
-
(2001)
J. Mol. Biol
, vol.314
, pp. 863-871
-
-
Goedken, E.R.1
Marqusee, S.2
-
26
-
-
25444512161
-
Direct observation of the three-state folding of a single protein molecule
-
Cecconi, C., Shank, E. A., Bustamante, C., and Marqusee, S. (2005) Direct observation of the three-state folding of a single protein molecule, Science 309, 2057-2060.
-
(2005)
Science
, vol.309
, pp. 2057-2060
-
-
Cecconi, C.1
Shank, E.A.2
Bustamante, C.3
Marqusee, S.4
-
27
-
-
0043009768
-
A four-way lunction accelerates hairpin ribozyme folding via a discrete intermediate
-
Tan, E., Wilson, T. J., Nahas, M. K., Clegg, R. M., Lilley, D. M., and Ha, T. (2003) A four-way lunction accelerates hairpin ribozyme folding via a discrete intermediate, Proc. Natl. Acad. Sci. U.S.A. 100. 9308-9313.
-
(2003)
Proc. Natl. Acad. Sci. U.S.A
, vol.100
, pp. 9308-9313
-
-
Tan, E.1
Wilson, T.J.2
Nahas, M.K.3
Clegg, R.M.4
Lilley, D.M.5
Ha, T.6
-
28
-
-
33644767158
-
Single-molecule FRET study of denaturant induced unfolding of RNase H
-
Kuzmenkina, E. V., Heyes, C. D., and Nienhaus, G. U. (2006) Single-molecule FRET study of denaturant induced unfolding of RNase H, J. Mol. Biol. 357, 313-324.
-
(2006)
J. Mol. Biol
, vol.357
, pp. 313-324
-
-
Kuzmenkina, E.V.1
Heyes, C.D.2
Nienhaus, G.U.3
-
29
-
-
0037011104
-
Crystal structure of a 12 ANK repeat stack from human ankyrinR
-
Michaely, P., Tomchick, D. R., Machius, M., and Anderson, R. G. (2002) Crystal structure of a 12 ANK repeat stack from human ankyrinR, EMBO J. 21, 6387-6396.
-
(2002)
EMBO J
, vol.21
, pp. 6387-6396
-
-
Michaely, P.1
Tomchick, D.R.2
Machius, M.3
Anderson, R.G.4
-
30
-
-
33645770767
-
Stepwise unfolding of ankyrin repeats in a single protein revealed by atomic force microscopy
-
Li, L. Wetzel, S., Pluckthun, A., and Fernandez, J. M. (2006) Stepwise unfolding of ankyrin repeats in a single protein revealed by atomic force microscopy, Biophys. J. 90, L30-L32.
-
(2006)
Biophys. J
, vol.90
-
-
Li, L.1
Wetzel, S.2
Pluckthun, A.3
Fernandez, J.M.4
-
31
-
-
33644849450
-
Nanospring behaviour of ankyrin repeats
-
Lee, G., Abdi, K., Jiang, Y., Michaely, P., Bennett, V., and Marszalek, P. E. (2006) Nanospring behaviour of ankyrin repeats. Nature 440, 246-249.
-
(2006)
Nature
, vol.440
, pp. 246-249
-
-
Lee, G.1
Abdi, K.2
Jiang, Y.3
Michaely, P.4
Bennett, V.5
Marszalek, P.E.6
-
32
-
-
1842535278
-
Hypothesis: A helix of ankyrin repeats of the NOMPC-TRP ion channel is the gating spring of mechanoreceptors
-
Howard, J., and Bechstedt, S. (2004) Hypothesis: a helix of ankyrin repeats of the NOMPC-TRP ion channel is the gating spring of mechanoreceptors, Curr. Biol. 14, R224-R226.
-
(2004)
Curr. Biol
, vol.14
-
-
Howard, J.1
Bechstedt, S.2
-
33
-
-
33644910749
-
Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited
-
English, B. P., Min, W., van Oijen, A. M., Lee, K. T., Luo, G., Sun, H., Cherayil, B. J., Kou, S. C., and Xie, X. S. (2006) Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited, Nat. Chem. Biol. 2, 87-94.
-
(2006)
Nat. Chem. Biol
, vol.2
, pp. 87-94
-
-
English, B.P.1
Min, W.2
van Oijen, A.M.3
Lee, K.T.4
Luo, G.5
Sun, H.6
Cherayil, B.J.7
Kou, S.C.8
Xie, X.S.9
-
34
-
-
0035819204
-
Immobilization in surface-tethered lipid vesicles as a new tool for single biomolecule spectroscopy
-
Boukobza, E., Sonnenfeld, A., and Haran, H. (2001) Immobilization in surface-tethered lipid vesicles as a new tool for single biomolecule spectroscopy, J. Phys. Chem. B 105, 12165-12170.
-
(2001)
J. Phys. Chem. B
, vol.105
, pp. 12165-12170
-
-
Boukobza, E.1
Sonnenfeld, A.2
Haran, H.3
-
35
-
-
30044448463
-
Extreme conformational diversity in human telomeric DNA
-
Lee, J. Y., Okumus, B., Kim, D. S., and Ha, T. (2005) Extreme conformational diversity in human telomeric DNA, Proc. Natl. Acad. Sci. U.S.A. 102, 18938-18943.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 18938-18943
-
-
Lee, J.Y.1
Okumus, B.2
Kim, D.S.3
Ha, T.4
-
36
-
-
7544225920
-
Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic
-
Okumus, B., Wilson, T. J., Lilley, D. M., and Ha, T. (2004) Vesicle encapsulation studies reveal that single molecule ribozyme heterogeneities are intrinsic, Biophys. J. 87, 2798-2806.
-
(2004)
Biophys. J
, vol.87
, pp. 2798-2806
-
-
Okumus, B.1
Wilson, T.J.2
Lilley, D.M.3
Ha, T.4
-
37
-
-
11144220854
-
A vesicle bioreactor as a step toward an artificial cell assembly
-
Noireaux, V., and Libchaber, A. (2004) A vesicle bioreactor as a step toward an artificial cell assembly, Proc. Natl. Acad. Sci. U.S.A. 101, 17669-17674.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, pp. 17669-17674
-
-
Noireaux, V.1
Libchaber, A.2
-
38
-
-
4143071283
-
Single-molecule three-color FRET
-
Hohng, S., Joo, C., and Ha, T. (2004) Single-molecule three-color FRET, Biophys. J. 87, 1328-1337.
-
(2004)
Biophys. J
, vol.87
, pp. 1328-1337
-
-
Hohng, S.1
Joo, C.2
Ha, T.3
-
39
-
-
13444291091
-
Three-color single-molecule fluorescence resonance energy transfer
-
Clamme, J. P., and Deniz, A. A. (2005) Three-color single-molecule fluorescence resonance energy transfer, ChemPhysChem 6, 74-77.
-
(2005)
ChemPhysChem
, vol.6
, pp. 74-77
-
-
Clamme, J.P.1
Deniz, A.A.2
-
40
-
-
33745774997
-
Direct force measurements on DNA in a solid-state nanopore
-
Keyser, U. F., Koeleman, B. N., van Dorp, S., Krapf, D., Smeets, R. M. M., Lemay, S. G., Dekker, N. H., and Dekker, C. (2006) Direct force measurements on DNA in a solid-state nanopore, Nat. Phys. 2, 473-477.
-
(2006)
Nat. Phys
, vol.2
, pp. 473-477
-
-
Keyser, U.F.1
Koeleman, B.N.2
van Dorp, S.3
Krapf, D.4
Smeets, R.M.M.5
Lemay, S.G.6
Dekker, N.H.7
Dekker, C.8
-
41
-
-
17444366080
-
Simultaneous, coincident optical trapping and single-molecule fluorescence
-
Lang, M. J., Fordyce, P. M., Engh, A. M., Neuman, K. C., and Block, S. M. (2004) Simultaneous, coincident optical trapping and single-molecule fluorescence, Nat. Methods 1, 133-139.
-
(2004)
Nat. Methods
, vol.1
, pp. 133-139
-
-
Lang, M.J.1
Fordyce, P.M.2
Engh, A.M.3
Neuman, K.C.4
Block, S.M.5
-
43
-
-
33645825831
-
Living cells as test tubes
-
Xie, X. S., Yu, J., and Yang, W. Y. (2006) Living cells as test tubes. Science 312, 228-230.
-
(2006)
Science
, vol.312
, pp. 228-230
-
-
Xie, X.S.1
Yu, J.2
Yang, W.Y.3
|