메뉴 건너뛰기




Volumn 37, Issue 3, 2009, Pages 712-720

Analysis of the eukaryotic topoisomerase II DNA gate: A single-molecule FRET and structural perspective

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE TRIPHOSPHATE; DNA; DNA TOPOISOMERASE (ATP HYDROLYSING);

EID: 63349107871     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkn1059     Document Type: Article
Times cited : (18)

References (53)
  • 2
    • 0031695155 scopus 로고    scopus 로고
    • Moving one DNA double helix through another by a type II DNA topoisomerase: The story of a simple molecular machine
    • Wang,J.C. (1998) Moving one DNA double helix through another by a type II DNA topoisomerase: The story of a simple molecular machine. Quart. Rev. Biophys., 31, 107-144.
    • (1998) Quart. Rev. Biophys , vol.31 , pp. 107-144
    • Wang, J.C.1
  • 3
    • 0036085460 scopus 로고    scopus 로고
    • Cellular roles of DNA topoisomerases: A molecular perspective
    • Wang,J.C. (2002) Cellular roles of DNA topoisomerases: A molecular perspective. Nat. Rev. Mol. Cell Biol., 3, 430-440.
    • (2002) Nat. Rev. Mol. Cell Biol , vol.3 , pp. 430-440
    • Wang, J.C.1
  • 4
    • 0030014783 scopus 로고    scopus 로고
    • DNA topoisomerases
    • Wang,J.C. (1996) DNA topoisomerases. Ann. Rev. Biochem., 65, 635-692.
    • (1996) Ann. Rev. Biochem , vol.65 , pp. 635-692
    • Wang, J.C.1
  • 5
    • 0019159334 scopus 로고
    • DNA topoisomerases
    • Cozzarelli,N.R. (1980) DNA topoisomerases. Cell, 22, 327-328.
    • (1980) Cell , vol.22 , pp. 327-328
    • Cozzarelli, N.R.1
  • 7
    • 0029098588 scopus 로고
    • Structure and mechanism of DNA topoisomerases
    • Wigley,D.B. (1995) Structure and mechanism of DNA topoisomerases. Ann. Rev. Biophys. Biomol. Struct., 24, 185-208.
    • (1995) Ann. Rev. Biophys. Biomol. Struct , vol.24 , pp. 185-208
    • Wigley, D.B.1
  • 8
    • 2442599792 scopus 로고    scopus 로고
    • Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases
    • Corbett,K.D. and Berger,J.M. (2004) Structure, molecular mechanisms, and evolutionary relationships in DNA topoisomerases. Annu. Rev. Biophys. Biomol. Struct., 33, 95-118.
    • (2004) Annu. Rev. Biophys. Biomol. Struct , vol.33 , pp. 95-118
    • Corbett, K.D.1    Berger, J.M.2
  • 9
    • 0034923502 scopus 로고    scopus 로고
    • DNA topoisomerases: Structure, function, and mechanism
    • Champoux,J.J. (2001) DNA topoisomerases: Structure, function, and mechanism. Annu. Rev. Biochem., 70, 369-413.
    • (2001) Annu. Rev. Biochem , vol.70 , pp. 369-413
    • Champoux, J.J.1
  • 10
    • 0025838305 scopus 로고
    • Proteolysis patterns of epitopically labeled yeast DNA topoisomerase II suggest an allosteric transition in the enzyme induced by ATP binding
    • Lindsley,J.E. and Wang,J.C. (1991) Proteolysis patterns of epitopically labeled yeast DNA topoisomerase II suggest an allosteric transition in the enzyme induced by ATP binding. Proc. Natl Acad. Sci. USA, 88, 10485-10489.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 10485-10489
    • Lindsley, J.E.1    Wang, J.C.2
  • 11
    • 0028137895 scopus 로고
    • Linker insertion mutagenesis of Drosophila topoisomerase II. Probing the structure of eukaryotic topoisomerase II
    • Lee,M.P. and Hsieh,T.S. (1994) Linker insertion mutagenesis of Drosophila topoisomerase II. Probing the structure of eukaryotic topoisomerase II. J. Mol. Biol., 235, 436-447.
    • (1994) J. Mol. Biol , vol.235 , pp. 436-447
    • Lee, M.P.1    Hsieh, T.S.2
  • 12
    • 0026046957 scopus 로고
    • A functional 125-kDa core polypeptide of fission yeast DNA topoisomerase II
    • Shiozaki,K. and Yanagida,M. (1991) A functional 125-kDa core polypeptide of fission yeast DNA topoisomerase II. Mol. Cell Biol., 11, 6093-6102.
    • (1991) Mol. Cell Biol , vol.11 , pp. 6093-6102
    • Shiozaki, K.1    Yanagida, M.2
  • 13
    • 0037155222 scopus 로고    scopus 로고
    • ATPase domain of eukaryotic DNA topoisomerase II. Inhibition of ATPase activity by the anti-cancer drug bisdioxopiperazine and ATP/ADP-induced dimerization
    • Hu,T., Sage,H. and Hsieh,T.-S. (2002) ATPase domain of eukaryotic DNA topoisomerase II. Inhibition of ATPase activity by the anti-cancer drug bisdioxopiperazine and ATP/ADP-induced dimerization. J. Biol. Chem. 277, 5944-5951.
    • (2002) J. Biol. Chem , vol.277 , pp. 5944-5951
    • Hu, T.1    Sage, H.2    Hsieh, T.-S.3
  • 14
    • 0027462987 scopus 로고
    • Study of allosteric communication between protomers by immunotagging
    • Lindsley,J.E. and Wang,J.C. (1993) Study of allosteric communication between protomers by immunotagging. Nature, 361, 749-750.
    • (1993) Nature , vol.361 , pp. 749-750
    • Lindsley, J.E.1    Wang, J.C.2
  • 15
    • 0027454490 scopus 로고
    • Function of the hydrophilic carboxyl terminus of type II DNA topoisomerase from Drosophila melanogaster I. In vitro studies
    • Crenshaw,D.G. and Hsieh,T. (1993) Function of the hydrophilic carboxyl terminus of type II DNA topoisomerase from Drosophila melanogaster I. In vitro studies. J. Biol. Chem., 268, 21328-21334.
    • (1993) J. Biol. Chem , vol.268 , pp. 21328-21334
    • Crenshaw, D.G.1    Hsieh, T.2
  • 16
    • 0028345885 scopus 로고
    • The C-terminal domain of Saccharomyces cerevisiae DNA topoisomerase II
    • Caron,P.R., Watt,P. and Wang,J.C. (1994) The C-terminal domain of Saccharomyces cerevisiae DNA topoisomerase II. Mol. Cell Biol., 14, 3197-3207.
    • (1994) Mol. Cell Biol , vol.14 , pp. 3197-3207
    • Caron, P.R.1    Watt, P.2    Wang, J.C.3
  • 17
    • 0026482117 scopus 로고
    • Functional dissection of the phosphorylated termini of fission yeast DNA topoisomerase II
    • Shiozaki,K. and Yanagida,M. (1992) Functional dissection of the phosphorylated termini of fission yeast DNA topoisomerase II. J. Cell. Biol., 119, 1023-1036.
    • (1992) J. Cell. Biol , vol.119 , pp. 1023-1036
    • Shiozaki, K.1    Yanagida, M.2
  • 18
    • 0032611214 scopus 로고    scopus 로고
    • The hydrophilic, protease-sensitive terminal domains of eucaryotic DNA topoisomerases have essential intracellular functions
    • Shaiu,W.L., Hu,T. and Hsieh,T.S. (1999) The hydrophilic, protease-sensitive terminal domains of eucaryotic DNA topoisomerases have essential intracellular functions. Pacific Symposium on Biocomputing, 578-589
    • (1999) Pacific Symposium on Biocomputing , pp. 578-589
    • Shaiu, W.L.1    Hu, T.2    Hsieh, T.S.3
  • 19
    • 0030747269 scopus 로고    scopus 로고
    • Cellular distribution of mammalian DNA topoisomerase II is determined by its catalytically dispensable C-terminal domain
    • Adachi,N., Miyaike,M., Kato,S., Kanamaru,R., Koyama,H. and Kikuchi,A. (1997) Cellular distribution of mammalian DNA topoisomerase II is determined by its catalytically dispensable C-terminal domain. Nuclic Acids Res., 25, 3135-3142.
    • (1997) Nuclic Acids Res , vol.25 , pp. 3135-3142
    • Adachi, N.1    Miyaike, M.2    Kato, S.3    Kanamaru, R.4    Koyama, H.5    Kikuchi, A.6
  • 20
    • 0027452353 scopus 로고
    • Function of the hydrophilic carboxyl terminus of type II DNA topoisomerase from Drosophila melanogaster. II. In vivo studies
    • Crenshaw,D.G. and Hsieh,T. (1993) Function of the hydrophilic carboxyl terminus of type II DNA topoisomerase from Drosophila melanogaster. II. In vivo studies. J. Biol. Chem., 268, 21335-21343.
    • (1993) J. Biol. Chem , vol.268 , pp. 21335-21343
    • Crenshaw, D.G.1    Hsieh, T.2
  • 21
    • 28844455588 scopus 로고    scopus 로고
    • Recent advances in understanding structure-function relationships in the type II topoisomerase mechanism
    • Schoeffler,A.J. and Berger,J.M. (2005) Recent advances in understanding structure-function relationships in the type II topoisomerase mechanism. Biochem. Soc. Trans., 33, 1465-1470.
    • (2005) Biochem. Soc. Trans , vol.33 , pp. 1465-1470
    • Schoeffler, A.J.1    Berger, J.M.2
  • 22
    • 37549023863 scopus 로고    scopus 로고
    • Structural basis for gate-DNA recognition and bending by type IIA topoisomerases
    • Dong,K.C. and Berger,J.M. (2007) Structural basis for gate-DNA recognition and bending by type IIA topoisomerases. Nature, 450 1201-1205.
    • (2007) Nature , vol.450 , pp. 1201-1205
    • Dong, K.C.1    Berger, J.M.2
  • 23
    • 50649101663 scopus 로고    scopus 로고
    • DNA topoisomerases: Harnessing and constraining energy to govern chromosome topology
    • Schoeffler,A.J. and Berger,J.M. (2008) DNA topoisomerases: Harnessing and constraining energy to govern chromosome topology. Quart. Rev. Biophys., 41, 41-101.
    • (2008) Quart. Rev. Biophys , vol.41 , pp. 41-101
    • Schoeffler, A.J.1    Berger, J.M.2
  • 24
    • 0141591551 scopus 로고    scopus 로고
    • Classen,S., Olland,S. and Berger,J.M. (2003) Structure of the topoisomerase II ATPase region and its mechanism of inhibition by the chemotherapeutic agent ICRF-187. [Erratum (2003) Proc. Natl Acad. Sci. USA, 100, 14510]. Proc. Natl Acad. Sci. USA, 100 10629-10634.
    • Classen,S., Olland,S. and Berger,J.M. (2003) Structure of the topoisomerase II ATPase region and its mechanism of inhibition by the chemotherapeutic agent ICRF-187. [Erratum (2003) Proc. Natl Acad. Sci. USA, 100, 14510]. Proc. Natl Acad. Sci. USA, 100 10629-10634.
  • 25
    • 27744591551 scopus 로고    scopus 로고
    • Nucleotide-dependent domain movement in the ATPase domain of a human type IIA DNA topoisomerase
    • Wei,H., Ruthenburg,A.J., Bechis,S.K. and Verdine,G.L. (2005) Nucleotide-dependent domain movement in the ATPase domain of a human type IIA DNA topoisomerase. J. Biol. Chem., 280, 37041-37047.
    • (2005) J. Biol. Chem , vol.280 , pp. 37041-37047
    • Wei, H.1    Ruthenburg, A.J.2    Bechis, S.K.3    Verdine, G.L.4
  • 26
    • 0030045003 scopus 로고    scopus 로고
    • Structure and mechanism of DNA topoisomerase II
    • Berger,J.M., Gamblin,S.J., Harrison,S.C. and Wang,J.C. (1996) Structure and mechanism of DNA topoisomerase II. Nature, 379, 225-232.
    • (1996) Nature , vol.379 , pp. 225-232
    • Berger, J.M.1    Gamblin, S.J.2    Harrison, S.C.3    Wang, J.C.4
  • 27
    • 0032947158 scopus 로고    scopus 로고
    • Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands
    • Fass,D., Bogden,C.E. and Berger,J.M. (1999) Quaternary changes in topoisomerase II may direct orthogonal movement of two DNA strands. Nat. Struct. Mol. Biol., 6, 322-326.
    • (1999) Nat. Struct. Mol. Biol , vol.6 , pp. 322-326
    • Fass, D.1    Bogden, C.E.2    Berger, J.M.3
  • 28
    • 0029961651 scopus 로고    scopus 로고
    • DNA transport by a type II topoisomerase: Direct evidence for a two-gate mechanism
    • Roca,J., Berger,J.M., Harrison,S.C. and Wang,J.C. (1996) DNA transport by a type II topoisomerase: Direct evidence for a two-gate mechanism. Proc. Natl Acad. Sci. USA, 93, 4057-4062.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 4057-4062
    • Roca, J.1    Berger, J.M.2    Harrison, S.C.3    Wang, J.C.4
  • 29
    • 0029911698 scopus 로고    scopus 로고
    • Recent developments in DNA topoisomerase II structure and mechanism
    • Berger,J.M. and Wang,J.C. (1996) Recent developments in DNA topoisomerase II structure and mechanism. Curr. Opin. Struct. Biol. 6, 84-90.
    • (1996) Curr. Opin. Struct. Biol , vol.6 , pp. 84-90
    • Berger, J.M.1    Wang, J.C.2
  • 30
    • 0026448670 scopus 로고
    • The capture of a DNA double helix by an ATP-dependent protein clamp: A key step in DNA transport by type II DNA topoisomerases
    • Roca,J. and Wang,J.C. (1992) The capture of a DNA double helix by an ATP-dependent protein clamp: A key step in DNA transport by type II DNA topoisomerases. Cell, 71, 833-840.
    • (1992) Cell , vol.71 , pp. 833-840
    • Roca, J.1    Wang, J.C.2
  • 31
    • 34247627894 scopus 로고    scopus 로고
    • Single-molecule measurements of the opening and closing of the DNA gate by eukaryotic topoisomerase II
    • Smiley,R.D., Collins,T.R., Hammes,G.G. and Hsieh,T.S. (2007) Single-molecule measurements of the opening and closing of the DNA gate by eukaryotic topoisomerase II. Proc. Natl Acad. Sci. USA, 104 4840-4845.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 4840-4845
    • Smiley, R.D.1    Collins, T.R.2    Hammes, G.G.3    Hsieh, T.S.4
  • 33
    • 84981779372 scopus 로고
    • Zwischenmolekulare Energiewanderung und Fluoreszenz.
    • Förster,T. (1948) Zwischenmolekulare Energiewanderung und Fluoreszenz. Annalen. Der. Physik., 437, 55-75.
    • (1948) Annalen. Der. Physik , vol.437 , pp. 55-75
    • Förster, T.1
  • 34
    • 0021099691 scopus 로고
    • Double strand DNA cleavage by type II DNA topoisomerase from Drosophila melanogaster
    • Sander,M. and Hsieh,T.-S. (1983) Double strand DNA cleavage by type II DNA topoisomerase from Drosophila melanogaster. J. Biol. Chem., 258, 8421-8428.
    • (1983) J. Biol. Chem , vol.258 , pp. 8421-8428
    • Sander, M.1    Hsieh, T.-S.2
  • 35
    • 0022431874 scopus 로고
    • Drosophila topoisomerase II double-strand DNA cleavage: Analysis of DNA sequence homology at the cleavage site
    • Sander,M. and Hsieh,T.-S. (1985) Drosophila topoisomerase II double-strand DNA cleavage: Analysis of DNA sequence homology at the cleavage site. Nucleic Acids Res., 13, 1057-1072.
    • (1985) Nucleic Acids Res , vol.13 , pp. 1057-1072
    • Sander, M.1    Hsieh, T.-S.2
  • 37
    • 0026503668 scopus 로고
    • A role for the passage helix in the DNA cleavage reaction of eukaryotic topoisomerase II. A two-site model for enzyme-mediated DNA cleavage
    • Corbett,A.H., Zechiedrich,E.L. and Osheroff,N. (1992) A role for the passage helix in the DNA cleavage reaction of eukaryotic topoisomerase II. A two-site model for enzyme-mediated DNA cleavage. J. Biol. Chem. 267, 683-686.
    • (1992) J. Biol. Chem , vol.267 , pp. 683-686
    • Corbett, A.H.1    Zechiedrich, E.L.2    Osheroff, N.3
  • 38
    • 33747743113 scopus 로고    scopus 로고
    • Interdomain communication in DNA topoisomerase II: DNA binding and enzyme activation
    • Mueller-Planitz,F. and Herschlag,D. (2006) Interdomain communication in DNA topoisomerase II: DNA binding and enzyme activation. J. Biol. Chem., 281, 23395-23404.
    • (2006) J. Biol. Chem , vol.281 , pp. 23395-23404
    • Mueller-Planitz, F.1    Herschlag, D.2
  • 39
    • 0024849694 scopus 로고
    • Nuclease protection by Drosophila DNA topoisomerase II
    • Lee,M.P., Sander,M. and Hsieh,T.-s. (1989) Nuclease protection by Drosophila DNA topoisomerase II. J. Biol. Chem., 264, 21779-21787.
    • (1989) J. Biol. Chem , vol.264 , pp. 21779-21787
    • Lee, M.P.1    Sander, M.2    Hsieh, T.-S.3
  • 40
    • 0025119181 scopus 로고
    • Characterization of the interaction between topoisomerase II and DNA by transcriptional footprinting
    • Thomsen,B., Bendixen,C., Lund,K., Andersen,A.H., Sorensen,B.S. and Westergaard,O. (1990) Characterization of the interaction between topoisomerase II and DNA by transcriptional footprinting. J. Mol. Biol., 215, 237-244.
    • (1990) J. Mol. Biol , vol.215 , pp. 237-244
    • Thomsen, B.1    Bendixen, C.2    Lund, K.3    Andersen, A.H.4    Sorensen, B.S.5    Westergaard, O.6
  • 41
    • 0018464261 scopus 로고
    • The orientational freedom of molecular probes. The orientation factor in intramolecular energy transfer
    • Dale,R.E., Eisinger,J. and Blumberg,W.E. (1979) The orientational freedom of molecular probes. The orientation factor in intramolecular energy transfer. Biophys. J., 26, 161-193.
    • (1979) Biophys. J , vol.26 , pp. 161-193
    • Dale, R.E.1    Eisinger, J.2    Blumberg, W.E.3
  • 43
    • 33745625118 scopus 로고    scopus 로고
    • Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: Multiple pathways of holoenzyme formation
    • Smiley,R.D., Zhuang,Z., Benkovic,S.J. and Hammes,G.G. (2006) Single-molecule investigation of the T4 bacteriophage DNA polymerase holoenzyme: Multiple pathways of holoenzyme formation. Biochemistry 45, 7990-7997.
    • (2006) Biochemistry , vol.45 , pp. 7990-7997
    • Smiley, R.D.1    Zhuang, Z.2    Benkovic, S.J.3    Hammes, G.G.4
  • 44
    • 0023102418 scopus 로고
    • Sequence dependence of Drosophila topoisomerase II in plasmid relaxation and DNA binding
    • Sander,M., Hsieh,T.-S., Udvardy,A. and Schedl,P. (1987) Sequence dependence of Drosophila topoisomerase II in plasmid relaxation and DNA binding. J. Mol. Biol., 194, 219-229.
    • (1987) J. Mol. Biol , vol.194 , pp. 219-229
    • Sander, M.1    Hsieh, T.-S.2    Udvardy, A.3    Schedl, P.4
  • 45
    • 0021099884 scopus 로고
    • DNA topoisomerase II from Drosophila melanogaster
    • Osheroff,N., Shelton,E.R. and Brutlag,D.L. (1983) DNA topoisomerase II from Drosophila melanogaster. J. Biol. Chem., 258, 9536-9543.
    • (1983) J. Biol. Chem , vol.258 , pp. 9536-9543
    • Osheroff, N.1    Shelton, E.R.2    Brutlag, D.L.3
  • 46
    • 29344466944 scopus 로고    scopus 로고
    • Conformation coupled enzyme catalysis: Single-molecule and transient kinetics investigation of dihydrofolate reductase
    • Antikainen,N.M., Smiley,R.D., Benkovic,S.J. and Hammes,G.G. (2005) Conformation coupled enzyme catalysis: Single-molecule and transient kinetics investigation of dihydrofolate reductase. Biochemistry, 44, 16835-16843.
    • (2005) Biochemistry , vol.44 , pp. 16835-16843
    • Antikainen, N.M.1    Smiley, R.D.2    Benkovic, S.J.3    Hammes, G.G.4
  • 47
    • 0027520798 scopus 로고
    • On the coupling between ATP usage and DNA transport by yeast DNA topoisomerase II
    • Lindsley,J.E. and Wang,J.C. (1993) On the coupling between ATP usage and DNA transport by yeast DNA topoisomerase II. J. Biol. Chem., 268, 8096-8104.
    • (1993) J. Biol. Chem , vol.268 , pp. 8096-8104
    • Lindsley, J.E.1    Wang, J.C.2
  • 48
    • 0034690257 scopus 로고    scopus 로고
    • Single-molecule analysis of DNA uncoiling by a type II topoisomerase
    • Strick,T.R., Croquette,V. and Bensimon,D. (2000) Single-molecule analysis of DNA uncoiling by a type II topoisomerase. Nature, 404, 901-904.
    • (2000) Nature , vol.404 , pp. 901-904
    • Strick, T.R.1    Croquette, V.2    Bensimon, D.3
  • 49
    • 0024316466 scopus 로고
    • DNA topoisomerase poisons as antitumor drugs
    • Liu,L.F. (1989) DNA topoisomerase poisons as antitumor drugs. Ann. Rev. Biochem., 58, 351-375.
    • (1989) Ann. Rev. Biochem , vol.58 , pp. 351-375
    • Liu, L.F.1
  • 50
    • 0037870269 scopus 로고    scopus 로고
    • Stabilization of eukaryotic topoisomerase II-DNA cleavage complexes
    • Wilsterman,A.M. and Osheroff,N. (2003) Stabilization of eukaryotic topoisomerase II-DNA cleavage complexes. Curr. Top. Med. Chem., 3, 321-338.
    • (2003) Curr. Top. Med. Chem , vol.3 , pp. 321-338
    • Wilsterman, A.M.1    Osheroff, N.2
  • 51
    • 0030707827 scopus 로고    scopus 로고
    • Footprinting of yeast DNA topoisomerase II lysyl side chains involved in substrate binding and interdomainal interactions
    • Li,W. and Wang,J.C. (1997) Footprinting of yeast DNA topoisomerase II lysyl side chains involved in substrate binding and interdomainal interactions. J. Biol. Chem., 272, 31190-31195.
    • (1997) J. Biol. Chem , vol.272 , pp. 31190-31195
    • Li, W.1    Wang, J.C.2
  • 52
    • 2942528667 scopus 로고    scopus 로고
    • The path of the DNA along the dimer interface of topoisomerase II
    • Roca,J. (2004) The path of the DNA along the dimer interface of topoisomerase II. J. Biol. Chem., 279, 25783-25788.
    • (2004) J. Biol. Chem , vol.279 , pp. 25783-25788
    • Roca, J.1
  • 53
    • 34247580761 scopus 로고    scopus 로고
    • Unlocking and opening a DNA gate
    • Wang,J.C. (2007) Unlocking and opening a DNA gate. Proc. Natl Acad. Sci. USA, 104, 4773-4774.
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 4773-4774
    • Wang, J.C.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.