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Volumn 10, Issue , 2010, Pages 90-102

Long noncoding RNAs, chromatin, and development

Author keywords

Chromatin; Development; Epigenetics; Epigenomics; IincRNAs; IncRNAs; Intergenic transcription; Long noncoding RNAs; ncRNAs; Noncoding RNAs; Transcription

Indexed keywords

HISTONE; UNTRANSLATED RNA;

EID: 77749304234     PISSN: None     EISSN: 1537744X     Source Type: Journal    
DOI: 10.1100/tsw.2010.7     Document Type: Review
Times cited : (131)

References (128)
  • 1
    • 4243088097 scopus 로고    scopus 로고
    • Stein, L., Bao, Z., Blasiar, D., Blumenthal, T., Brent, M., Chen, N., Chinwalla, A., Clarke, L., Clee, C., Coghlan, A., Coulson, A., D'Eustachio, P., Fitch, D., Fulton, L., Fulton, R., Griffiths-Jones, S., Harris, T., Hillier, L., Kamath, R., Kuwabara, P., Mardis, E., Marra, M., Miner, T., Minx, P., Mullikin, J., Plumb, R., Rogers, J., Schein, J., Sohrmann, M., Spieth, J., Stajich, J., Wei, C., Willey, D., Wilson, R., Durbin, R., and Waterston, R. (2003) The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 1, E45.
    • Stein, L., Bao, Z., Blasiar, D., Blumenthal, T., Brent, M., Chen, N., Chinwalla, A., Clarke, L., Clee, C., Coghlan, A., Coulson, A., D'Eustachio, P., Fitch, D., Fulton, L., Fulton, R., Griffiths-Jones, S., Harris, T., Hillier, L., Kamath, R., Kuwabara, P., Mardis, E., Marra, M., Miner, T., Minx, P., Mullikin, J., Plumb, R., Rogers, J., Schein, J., Sohrmann, M., Spieth, J., Stajich, J., Wei, C., Willey, D., Wilson, R., Durbin, R., and Waterston, R. (2003) The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics. PLoS Biol. 1, E45.
  • 2
    • 33749342164 scopus 로고    scopus 로고
    • Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human
    • Goodstadt, L. and Ponting, C. (2006) Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human. PLoS Comput. Biol. 2, e133.
    • (2006) PLoS Comput. Biol , vol.2
    • Goodstadt, L.1    Ponting, C.2
  • 3
    • 0035252410 scopus 로고    scopus 로고
    • Alternative splicing: Increasing diversity in the proteomic world
    • Graveley, B. (2001) Alternative splicing: increasing diversity in the proteomic world. Trends Genet. 17, 100-107.
    • (2001) Trends Genet , vol.17 , pp. 100-107
    • Graveley, B.1
  • 4
    • 40649111338 scopus 로고    scopus 로고
    • Non-coding RNAs, epigenetics and complexity
    • Costa, F. (2008) Non-coding RNAs, epigenetics and complexity. Gene 410, 9-17.
    • (2008) Gene , vol.410 , pp. 9-17
    • Costa, F.1
  • 5
    • 33847698971 scopus 로고    scopus 로고
    • The relationship between non-protein-coding DNA and eukaryotic complexity
    • Taft, R., Pheasant, M., and Mattick, J. (2007) The relationship between non-protein-coding DNA and eukaryotic complexity. Bioessays 29, 288-299.
    • (2007) Bioessays , vol.29 , pp. 288-299
    • Taft, R.1    Pheasant, M.2    Mattick, J.3
  • 6
    • 34250305146 scopus 로고    scopus 로고
    • Birney, E, Stamatoyannopoulos, J, Dutta, A, Guigó, R, Gingeras, T, Margulies, E, Weng, Z, Snyder, M, Dermitzakis, E, Thurman, R, Kuehn, M, Taylor, C, Neph, S, Koch, C, Asthana, S, Malhotra, A, Adzhubei, I, Greenbaum, J, Andrews, R, Flicek, P, Boyle, P, Cao, H, Carter, N, Clelland, G, Davis, S, Day, N, Dhami, P, Dillon, S, Dorschner, M, Fiegler, H, Giresi, P, Goldy, J, Hawrylycz, M, Haydock, A, Humbert, R, James, K, Johnson, B, Johnson, E, Frum, T, Rosenzweig, E, Karnani, N, Lee, K, Lefebvre, G, Navas, P, Neri, F, Parker, S, Sabo, P, Sandstrom, R, Shafer, A, Vetrie, D, Weaver, M, Wilcox, S, Yu, M, Collins, F, Dekker, J, Lieb, J, Tullius, T, Crawford, G, Sunyaev, S, Noble, W, Dunham, I, Denoeud, F, Reymond, A, Kapranov, P, Rozowsky, J, Zheng, D, Castelo, R, Frankish, A, Harrow, J, Ghosh, S, Sandelin, A, Hofacker, I, Baertsch, R, Keefe, D, Dike, S, Cheng, J, Hirsch, H, Sekinger, E, Lagarde, J, Abril, J
    • Birney, E., Stamatoyannopoulos, J., Dutta, A., Guigó, R., Gingeras, T., Margulies, E., Weng, Z., Snyder, M., Dermitzakis, E., Thurman, R., Kuehn, M., Taylor, C., Neph, S., Koch, C., Asthana, S., Malhotra, A., Adzhubei, I., Greenbaum, J., Andrews, R., Flicek, P., Boyle, P., Cao, H., Carter, N., Clelland, G., Davis, S., Day, N., Dhami, P., Dillon, S., Dorschner, M., Fiegler, H., Giresi, P., Goldy, J., Hawrylycz, M., Haydock, A., Humbert, R., James, K., Johnson, B., Johnson, E., Frum, T., Rosenzweig, E., Karnani, N., Lee, K., Lefebvre, G., Navas, P., Neri, F., Parker, S., Sabo, P., Sandstrom, R., Shafer, A., Vetrie, D., Weaver, M., Wilcox, S., Yu, M., Collins, F., Dekker, J., Lieb, J., Tullius, T., Crawford, G., Sunyaev, S., Noble, W., Dunham, I., Denoeud, F., Reymond, A., Kapranov, P., Rozowsky, J., Zheng, D., Castelo, R., Frankish, A., Harrow, J., Ghosh, S., Sandelin, A., Hofacker, I., Baertsch, R., Keefe, D., Dike, S., Cheng, J., Hirsch, H., Sekinger, E., Lagarde, J., Abril, J., Shahab, A., Flamm, C., Fried, C., Hackermüller, J., Hertel, J., Lindemeyer, M., Missal, K., Tanzer, A., Washietl, S., Korbel, J., Emanuelsson, O., Pedersen, J., Holroyd, N., Taylor, R., Swarbreck, D., Matthews, N., Dickson, M., Thomas, D., Weirauch, M., Gilbert, J., Drenkow, J., Bell, I., Zhao, X., Srinivasan, K., Sung, W., Ooi, H., Chiu, K., Foissac, S., Alioto, T., Brent, M., Pachter, L., Tress, M., Valencia, A., Choo, S., Choo, C., Ucla, C., Manzano, C., Wyss, C., Cheung, E., Clark, T., Brown, J., Ganesh, M., Patel, S., Tammana, H., Chrast, J., Henrichsen, C., Kai, C., Kawai, J., Nagalakshmi, U., Wu, J., Lian, Z., Lian, J., Newburger, P., Zhang, X., Bickel, P., Mattick, J., Carninci, P., Hayashizaki, Y., Weissman, S., Hubbard, T., Myers, R., Rogers, J., Stadler, P., Lowe, T., Wei, C., Ruan, Y., Struhl, K., Gerstein, M., Antonarakis, S., Fu, Y., Green, E., Karaöz, U., Siepel, A., Taylor, J., Liefer, L., Wetterstrand, K., Good, P., Feingold, E., Guyer, M., Cooper, G., Asimenos, G., Dewey, C., Hou, M., Nikolaev, S., Montoya-Burgos, J., Löytynoja, A., Whelan, S., Pardi, F., Massingham, T., Huang, H., Zhang, N., Holmes, I., Mullikin, J., Ureta-Vidal, A., Paten, B., Seringhaus, M., Church, D., Rosenbloom, K., Kent, W., Stone, E., Batzoglou, S., Goldman, N., Hardison, R., Haussler, D., Miller, W., Sidow, A., Trinklein, N., Zhang, Z., Barrera, L., Stuart, R., King, D., Ameur, A., Enroth, S., Bieda, M., Kim, J., Bhinge, A., Jiang, N., Liu, J., Yao, F., Vega, V., Lee, C., Ng, P., Yang, A., Moqtaderi, Z., Zhu, Z., Xu, X., Squazzo, S., Oberley, M., Inman, D., Singer, M., Richmond, T., Munn, K., Rada-Iglesias, A., Wallerman, O., Komorowski, J., Fowler, J., Couttet, P., Bruce, A., Dovey, O., Ellis, P., Langford, C., Nix, D., Euskirchen, G., Hartman, S., Urban, A., Kraus, P., Van Calcar, S., Heintzman, N., Kim, T., Wang, K., Qu, C., Hon, G., Luna, R., Glass, C., Rosenfeld, M., Aldred, S., Cooper, S., Halees, A., Lin, J., Shulha, H., Xu, M., Haidar, J., Yu, Y., Iyer, V., Green, R., Wadelius, C., Farnham, P., Ren, B., Harte, R., Hinrichs, A., Trumbower, H., Clawson, H., Hillman-Jackson, J., Zweig, A., Smith, K., Thakkapallayil, A., Barber, G., Kuhn, R., Karolchik, D., Armengol, L., Bird, C., de Bakker, P., Kern, A., Lopez-Bigas, N., Martin, J., Stranger, B., Woodroffe, A., Davydov, E., Dimas, A., Eyras, E., Hallgrímsdóttir, I., Huppert, J., Zody, M., Abecasis, G., Estivill, X., Bouffard, G., Guan, X., Hansen, N., Idol, J., Maduro, V., Maskeri, B., McDowell, J., Park, M., Thomas, P., Young, A., Blakesley, R., Muzny, D., Sodergren, E., Wheeler, D., Worley, K., Jiang, H., Weinstock, G., Gibbs, R., Graves, T., Fulton, R., Mardis, E., Wilson, R., Clamp, M., Cuff, J., Gnerre, S., Jaffe, D., Chang, J., Lindblad-Toh, K., Lander, E., Koriabine, M., Nefedov, M., Osoegawa, K., Yoshinaga, Y., Zhu, B., and de Jong, P. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447, 799-816.
  • 7
    • 34248162440 scopus 로고    scopus 로고
    • Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs
    • Ponjavic, J., Ponting, C., and Lunter, G. (2007) Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs. Genome Res. 17, 556-565.
    • (2007) Genome Res , vol.17 , pp. 556-565
    • Ponjavic, J.1    Ponting, C.2    Lunter, G.3
  • 8
    • 33846984935 scopus 로고    scopus 로고
    • Transcriptional noise and the fidelity of initiation by RNA polymerase II
    • Struhl, K. (2007) Transcriptional noise and the fidelity of initiation by RNA polymerase II. Nat. Struct. Mol. Biol. 14, 103-105.
    • (2007) Nat. Struct. Mol. Biol , vol.14 , pp. 103-105
    • Struhl, K.1
  • 9
    • 34249088350 scopus 로고    scopus 로고
    • Genome-wide transcription and the implications for genomic organization
    • Kapranov, P., Willingham, A., and Gingeras, T. (2007) Genome-wide transcription and the implications for genomic organization. Nat. Rev. Genet. 8, 413-423.
    • (2007) Nat. Rev. Genet , vol.8 , pp. 413-423
    • Kapranov, P.1    Willingham, A.2    Gingeras, T.3
  • 13
    • 47649111278 scopus 로고    scopus 로고
    • RNA polymerase II activity is located on the surface of proteinrich transcription factories
    • Eskiw, C., Rapp, A., Carter, D., and Cook, P. (2008) RNA polymerase II activity is located on the surface of proteinrich transcription factories. J. Cell Sci. 121, 1999-2007.
    • (2008) J. Cell Sci , vol.121 , pp. 1999-2007
    • Eskiw, C.1    Rapp, A.2    Carter, D.3    Cook, P.4
  • 15
    • 0036898580 scopus 로고    scopus 로고
    • Long-range chromatin regulatory interactions in vivo
    • Carter, D., Chakalova, L., Osborne, C., Dai, Y., and Fraser, P. (2002) Long-range chromatin regulatory interactions in vivo. Nat. Genet. 32, 623-626.
    • (2002) Nat. Genet , vol.32 , pp. 623-626
    • Carter, D.1    Chakalova, L.2    Osborne, C.3    Dai, Y.4    Fraser, P.5
  • 16
    • 0344897665 scopus 로고    scopus 로고
    • Nongenic transcription, gene regulation and action at a distance
    • Cook, P. (2003) Nongenic transcription, gene regulation and action at a distance. J. Cell Sci. 116, 4483-4491.
    • (2003) J. Cell Sci , vol.116 , pp. 4483-4491
    • Cook, P.1
  • 17
    • 33646729244 scopus 로고    scopus 로고
    • Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
    • Branco, M. and Pombo, A. (2006) Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol. 4, e138.
    • (2006) PLoS Biol , vol.4
    • Branco, M.1    Pombo, A.2
  • 18
    • 33750212321 scopus 로고    scopus 로고
    • Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-onchip (4C)
    • Simonis, M., Klous, P., Splinter, E., Moshkin, Y., Willemsen, R., de Wit, E., van Steensel, B., and de Laat, W. (2006) Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-onchip (4C). Nat. Genet. 38, 1348-1354.
    • (2006) Nat. Genet , vol.38 , pp. 1348-1354
    • Simonis, M.1    Klous, P.2    Splinter, E.3    Moshkin, Y.4    Willemsen, R.5    de Wit, E.6    van Steensel, B.7    de Laat, W.8
  • 20
    • 35648930913 scopus 로고    scopus 로고
    • The role of transcription factories in large-scale structure and dynamics of interphase chromatin
    • Sexton, T., Umlauf, D., Kurukuti, S., and Fraser, P. (2007) The role of transcription factories in large-scale structure and dynamics of interphase chromatin. Semin. Cell Dev. Biol. 18, 691-697.
    • (2007) Semin. Cell Dev. Biol , vol.18 , pp. 691-697
    • Sexton, T.1    Umlauf, D.2    Kurukuti, S.3    Fraser, P.4
  • 21
    • 65649092633 scopus 로고    scopus 로고
    • Mattick, J. (2009) The genetic signatures of noncoding RNAs. PLoS Genet. 5, e1000459.
    • Mattick, J. (2009) The genetic signatures of noncoding RNAs. PLoS Genet. 5, e1000459.
  • 22
    • 33845474731 scopus 로고    scopus 로고
    • Non-coding RNAs: Lost in translation?
    • Costa, F. (2007) Non-coding RNAs: lost in translation? Gene 386, 1-10.
    • (2007) Gene , vol.386 , pp. 1-10
    • Costa, F.1
  • 23
    • 58749096360 scopus 로고    scopus 로고
    • On the road to reading the RNA-interference code
    • Siomi, H. and Siomi, M. (2009) On the road to reading the RNA-interference code. Nature 457, 396-404.
    • (2009) Nature , vol.457 , pp. 396-404
    • Siomi, H.1    Siomi, M.2
  • 24
    • 72849125118 scopus 로고    scopus 로고
    • Emerging similarities in epigenetic gene silencing by long noncoding RNAs
    • Epub ahead of print
    • Nagano, T. and Fraser, P. (2009) Emerging similarities in epigenetic gene silencing by long noncoding RNAs. Mamm. Genome. [Epub ahead of print]
    • (2009) Mamm. Genome
    • Nagano, T.1    Fraser, P.2
  • 25
    • 34147193819 scopus 로고    scopus 로고
    • Beta-globin intergenic transcription and histone acetylation dependent on an enhancer
    • Kim, A., Zhao, H., Ifrim, I., and Dean, A. (2007) Beta-globin intergenic transcription and histone acetylation dependent on an enhancer. Mol. Cell. Biol. 27, 2980-2986.
    • (2007) Mol. Cell. Biol , vol.27 , pp. 2980-2986
    • Kim, A.1    Zhao, H.2    Ifrim, I.3    Dean, A.4
  • 26
    • 33746423865 scopus 로고    scopus 로고
    • Locus control region transcription plays an active role in long-range gene activation
    • Ho, Y., Elefant, F., Liebhaber, S., and Cooke, N. (2006) Locus control region transcription plays an active role in long-range gene activation. Mol. Cell 23, 365-375.
    • (2006) Mol. Cell , vol.23 , pp. 365-375
    • Ho, Y.1    Elefant, F.2    Liebhaber, S.3    Cooke, N.4
  • 27
    • 69249235745 scopus 로고    scopus 로고
    • Lessons from X-chromosome inactivation: Long ncRNA as guides and tethers to the epigenome
    • Lee, J. (2009) Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome. Genes Dev. 23, 1831-1842.
    • (2009) Genes Dev , vol.23 , pp. 1831-1842
    • Lee, J.1
  • 29
    • 34250738340 scopus 로고    scopus 로고
    • T cell development: Better living through chromatin
    • Krangel, M. (2007) T cell development: better living through chromatin. Nat. Immunol. 8, 687-694.
    • (2007) Nat. Immunol , vol.8 , pp. 687-694
    • Krangel, M.1
  • 31
    • 33847032960 scopus 로고    scopus 로고
    • The mammalian epigenome
    • Bernstein, B., Meissner, A., and Lander, E. (2007) The mammalian epigenome. Cell 128, 669-681.
    • (2007) Cell , vol.128 , pp. 669-681
    • Bernstein, B.1    Meissner, A.2    Lander, E.3
  • 32
    • 33847076849 scopus 로고    scopus 로고
    • Chromatin modifications and their function
    • Kouzarides, T. (2007) Chromatin modifications and their function. Cell 128, 693-705.
    • (2007) Cell , vol.128 , pp. 693-705
    • Kouzarides, T.1
  • 33
    • 33645231102 scopus 로고    scopus 로고
    • Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin
    • Bernstein, E., Duncan, E., Masui, O., Gil, J., Heard, E., and Allis, C. (2006) Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin. Mol. Cell. Biol. 26, 2560-2569.
    • (2006) Mol. Cell. Biol , vol.26 , pp. 2560-2569
    • Bernstein, E.1    Duncan, E.2    Masui, O.3    Gil, J.4    Heard, E.5    Allis, C.6
  • 35
    • 43149109529 scopus 로고    scopus 로고
    • RNA is an integral component of chromatin that contributes to its structural organization
    • Rodríguez-Campos, A. and Azorín, F. (2007) RNA is an integral component of chromatin that contributes to its structural organization. PLoS One 2, e1182.
    • (2007) PLoS One , vol.2
    • Rodríguez-Campos, A.1    Azorín, F.2
  • 36
    • 0030034051 scopus 로고    scopus 로고
    • XIST RNA paints the inactive X chromosome at interphase: Evidence for a novel RNA involved in nuclear/chromosome structure
    • Clemson, C., McNeil, J., Willard, H., and Lawrence, J. (1996) XIST RNA paints the inactive X chromosome at interphase: evidence for a novel RNA involved in nuclear/chromosome structure. J. Cell Biol. 132, 259-275.
    • (1996) J. Cell Biol , vol.132 , pp. 259-275
    • Clemson, C.1    McNeil, J.2    Willard, H.3    Lawrence, J.4
  • 37
    • 62549117314 scopus 로고    scopus 로고
    • An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles
    • Clemson, C., Hutchinson, J., Sara, S., Ensminger, A., Fox, A., Chess, A., and Lawrence, J. (2009) An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles. Mol. Cell 33, 717-726.
    • (2009) Mol. Cell , vol.33 , pp. 717-726
    • Clemson, C.1    Hutchinson, J.2    Sara, S.3    Ensminger, A.4    Fox, A.5    Chess, A.6    Lawrence, J.7
  • 38
    • 0036775704 scopus 로고    scopus 로고
    • Coordinated methyl and RNA binding is required for heterochromatin localization of mammalian HP1alpha
    • Muchardt, C., Guilleme, M., Seeler, J., Trouche, D., Dejean, A., and Yaniv, M. (2002) Coordinated methyl and RNA binding is required for heterochromatin localization of mammalian HP1alpha. EMBO Rep. 3, 975-981.
    • (2002) EMBO Rep , vol.3 , pp. 975-981
    • Muchardt, C.1    Guilleme, M.2    Seeler, J.3    Trouche, D.4    Dejean, A.5    Yaniv, M.6
  • 39
    • 57349114640 scopus 로고    scopus 로고
    • Analysis of intergenic transcription and histone modification across the human immunoglobulin heavy-chain locus
    • Chowdhury, M., Forouhi, O., Dayal, S., McCloskey, N., Gould, H., Felsenfeld, G., and Fear, D. (2008) Analysis of intergenic transcription and histone modification across the human immunoglobulin heavy-chain locus. Proc. Natl. Acad. Sci. U. S. A. 105, 15872-15877.
    • (2008) Proc. Natl. Acad. Sci. U. S. A , vol.105 , pp. 15872-15877
    • Chowdhury, M.1    Forouhi, O.2    Dayal, S.3    McCloskey, N.4    Gould, H.5    Felsenfeld, G.6    Fear, D.7
  • 40
    • 0033853988 scopus 로고    scopus 로고
    • Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus
    • Gribnau, J., Diderich, K., Pruzina, S., Calzolari, R., and Fraser, P. (2000) Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus. Mol. Cell 5, 377-386.
    • (2000) Mol. Cell , vol.5 , pp. 377-386
    • Gribnau, J.1    Diderich, K.2    Pruzina, S.3    Calzolari, R.4    Fraser, P.5
  • 42
    • 33748850103 scopus 로고    scopus 로고
    • Regulation of T cell receptor-alpha gene recombination by transcription
    • Abarrategui, I. and Krangel, M. (2006) Regulation of T cell receptor-alpha gene recombination by transcription. Nat. Immunol. 7, 1109-1115.
    • (2006) Nat. Immunol , vol.7 , pp. 1109-1115
    • Abarrategui, I.1    Krangel, M.2
  • 43
    • 35348927529 scopus 로고    scopus 로고
    • Noncoding transcription controls downstream promoters to regulate T-cell receptor alpha recombination
    • Abarrategui, I. and Krangel, M. (2007) Noncoding transcription controls downstream promoters to regulate T-cell receptor alpha recombination. EMBO J. 26, 4380-4390.
    • (2007) EMBO J , vol.26 , pp. 4380-4390
    • Abarrategui, I.1    Krangel, M.2
  • 45
    • 0033598808 scopus 로고    scopus 로고
    • Chromatin modification by DNA tracking
    • Travers, A. (1999) Chromatin modification by DNA tracking. Proc. Natl. Acad. Sci. U. S. A. 96, 13634-13637.
    • (1999) Proc. Natl. Acad. Sci. U. S. A , vol.96 , pp. 13634-13637
    • Travers, A.1
  • 46
    • 33646691283 scopus 로고    scopus 로고
    • Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II
    • Pavri, R., Zhu, B., Li, G., Trojer, P., Mandal, S., Shilatifard, A., and Reinberg, D. (2006) Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II. Cell 125, 703-717.
    • (2006) Cell , vol.125 , pp. 703-717
    • Pavri, R.1    Zhu, B.2    Li, G.3    Trojer, P.4    Mandal, S.5    Shilatifard, A.6    Reinberg, D.7
  • 47
    • 0035195942 scopus 로고    scopus 로고
    • Non-coding RNAs: The architects of eukaryotic complexity
    • Mattick, J. (2001) Non-coding RNAs: the architects of eukaryotic complexity. EMBO Rep. 2, 986-991.
    • (2001) EMBO Rep , vol.2 , pp. 986-991
    • Mattick, J.1
  • 48
    • 0036796374 scopus 로고    scopus 로고
    • rd (2002) Having it both ways: transcription factors that bind DNA and RNA. Nucleic Acids Res. 30, 4118-4126.
    • rd (2002) Having it both ways: transcription factors that bind DNA and RNA. Nucleic Acids Res. 30, 4118-4126.
  • 49
    • 10344250458 scopus 로고    scopus 로고
    • Components of the DNA methylation system of chromatin control are RNA-binding proteins
    • Jeffery, L. and Nakielny, S. (2004) Components of the DNA methylation system of chromatin control are RNA-binding proteins. J. Biol. Chem. 279, 49479-49487.
    • (2004) J. Biol. Chem , vol.279 , pp. 49479-49487
    • Jeffery, L.1    Nakielny, S.2
  • 50
    • 42649124614 scopus 로고    scopus 로고
    • Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain
    • Shimojo, H., Sano, N., Moriwaki, Y., Okuda, M., Horikoshi, M., and Nishimura, Y. (2008) Novel structural and functional mode of a knot essential for RNA binding activity of the Esa1 presumed chromodomain. J. Mol. Biol. 378, 987-1001.
    • (2008) J. Mol. Biol , vol.378 , pp. 987-1001
    • Shimojo, H.1    Sano, N.2    Moriwaki, Y.3    Okuda, M.4    Horikoshi, M.5    Nishimura, Y.6
  • 51
    • 23044437498 scopus 로고    scopus 로고
    • RNA meets chromatin
    • Bernstein, E. and Allis, C. (2005) RNA meets chromatin. Genes Dev. 19, 1635-1655.
    • (2005) Genes Dev , vol.19 , pp. 1635-1655
    • Bernstein, E.1    Allis, C.2
  • 52
    • 42549104650 scopus 로고    scopus 로고
    • Regulatory RNAs and chromatin modification in dosage compensation: A continuous path from flies to humans?
    • Angelopoulou, R., Lavranos, G., and Manolakou, P. (2008) Regulatory RNAs and chromatin modification in dosage compensation: a continuous path from flies to humans? Reprod. Biol. Endocrinol. 6, 12.
    • (2008) Reprod. Biol. Endocrinol , vol.6 , pp. 12
    • Angelopoulou, R.1    Lavranos, G.2    Manolakou, P.3
  • 53
    • 33747798962 scopus 로고    scopus 로고
    • Non-coding RNA in fly dosage compensation
    • Deng, X. and Meller, V. (2006) Non-coding RNA in fly dosage compensation. Trends Biochem. Sci. 31, 526-532.
    • (2006) Trends Biochem. Sci , vol.31 , pp. 526-532
    • Deng, X.1    Meller, V.2
  • 54
    • 33644781703 scopus 로고    scopus 로고
    • The Drosophila dosage compensation complex binds to polytene chromosomes independently of developmental changes in transcription
    • Kotlikova, I., Demakova, O., Semeshin, V., Shloma, V., Boldyreva, L., Kuroda, M., and Zhimulev, I. (2006) The Drosophila dosage compensation complex binds to polytene chromosomes independently of developmental changes in transcription. Genetics 172, 963-974.
    • (2006) Genetics , vol.172 , pp. 963-974
    • Kotlikova, I.1    Demakova, O.2    Semeshin, V.3    Shloma, V.4    Boldyreva, L.5    Kuroda, M.6    Zhimulev, I.7
  • 55
    • 33645516399 scopus 로고    scopus 로고
    • X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila
    • Legube, G., McWeeney, S., Lercher, M., and Akhtar, A. (2006) X-chromosome-wide profiling of MSL-1 distribution and dosage compensation in Drosophila. Genes Dev. 20, 871-883.
    • (2006) Genes Dev , vol.20 , pp. 871-883
    • Legube, G.1    McWeeney, S.2    Lercher, M.3    Akhtar, A.4
  • 56
    • 58549109636 scopus 로고    scopus 로고
    • X chromosome dosage compensation: How mammals keep the balance
    • Payer, B. and Lee, J. (2008) X chromosome dosage compensation: how mammals keep the balance. Annu. Rev. Genet. 42, 733-772.
    • (2008) Annu. Rev. Genet , vol.42 , pp. 733-772
    • Payer, B.1    Lee, J.2
  • 57
    • 0026489906 scopus 로고
    • The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus
    • Brockdorff, N., Ashworth, A., Kay, G., McCabe, V., Norris, D., Cooper, P., Swift, S., and Rastan, S. (1992) The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus. Cell 71, 515-526.
    • (1992) Cell , vol.71 , pp. 515-526
    • Brockdorff, N.1    Ashworth, A.2    Kay, G.3    McCabe, V.4    Norris, D.5    Cooper, P.6    Swift, S.7    Rastan, S.8
  • 58
    • 0030026001 scopus 로고    scopus 로고
    • Requirement for Xist in X chromosome inactivation
    • Penny, G., Kay, G., Sheardown, S., Rastan, S., and Brockdorff, N. (1996) Requirement for Xist in X chromosome inactivation. Nature 379, 131-137.
    • (1996) Nature , vol.379 , pp. 131-137
    • Penny, G.1    Kay, G.2    Sheardown, S.3    Rastan, S.4    Brockdorff, N.5
  • 59
    • 0036479009 scopus 로고    scopus 로고
    • Chromosomal silencing and localization are mediated by different domains of Xist RNA
    • Wutz, A., Rasmussen, T., and Jaenisch, R. (2002) Chromosomal silencing and localization are mediated by different domains of Xist RNA. Nat. Genet. 30, 167-174.
    • (2002) Nat. Genet , vol.30 , pp. 167-174
    • Wutz, A.1    Rasmussen, T.2    Jaenisch, R.3
  • 61
    • 0033214928 scopus 로고    scopus 로고
    • Targeted mutagenesis of Tsix leads to nonrandom X inactivation
    • Lee, J. and Lu, N. (1999) Targeted mutagenesis of Tsix leads to nonrandom X inactivation. Cell 99, 47-57.
    • (1999) Cell , vol.99 , pp. 47-57
    • Lee, J.1    Lu, N.2
  • 62
    • 0037349309 scopus 로고    scopus 로고
    • Xite, X-inactivation intergenic transcription elements that regulate the probability of choice
    • Ogawa, Y. and Lee, J. (2003) Xite, X-inactivation intergenic transcription elements that regulate the probability of choice. Mol. Cell 11, 731-743.
    • (2003) Mol. Cell , vol.11 , pp. 731-743
    • Ogawa, Y.1    Lee, J.2
  • 63
    • 34250618383 scopus 로고    scopus 로고
    • X-chromosome kiss and tell: How the Xs go their separate ways
    • Anguera, M., Sun, B., Xu, N., and Lee, J. (2006) X-chromosome kiss and tell: how the Xs go their separate ways. Cold Spring Harb. Symp. Quant. Biol. 71, 429-437.
    • (2006) Cold Spring Harb. Symp. Quant. Biol , vol.71 , pp. 429-437
    • Anguera, M.1    Sun, B.2    Xu, N.3    Lee, J.4
  • 64
    • 33644751726 scopus 로고    scopus 로고
    • Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation
    • Bacher, C., Guggiari, M., Brors, B., Augui, S., Clerc, P., Avner, P., Eils, R., and Heard, E. (2006) Transient colocalization of X-inactivation centres accompanies the initiation of X inactivation. Nat. Cell Biol. 8, 293-299.
    • (2006) Nat. Cell Biol , vol.8 , pp. 293-299
    • Bacher, C.1    Guggiari, M.2    Brors, B.3    Augui, S.4    Clerc, P.5    Avner, P.6    Eils, R.7    Heard, E.8
  • 65
    • 33644501514 scopus 로고    scopus 로고
    • Molecular biology. "X"-rated chromosomal rendezvous
    • Carrel, L. (2006) Molecular biology. "X"-rated chromosomal rendezvous. Science 311, 1107-1109.
    • (2006) Science , vol.311 , pp. 1107-1109
    • Carrel, L.1
  • 66
    • 33644557773 scopus 로고    scopus 로고
    • Transient homologous chromosome pairing marks the onset of X inactivation
    • Xu, N., Tsai, C., and Lee, J. (2006) Transient homologous chromosome pairing marks the onset of X inactivation. Science 311, 1149-1152.
    • (2006) Science , vol.311 , pp. 1149-1152
    • Xu, N.1    Tsai, C.2    Lee, J.3
  • 67
    • 35649000946 scopus 로고    scopus 로고
    • Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein
    • Xu, N., Donohoe, M., Silva, S., and Lee, J. (2007) Evidence that homologous X-chromosome pairing requires transcription and Ctcf protein. Nat. Genet. 39, 1390-1396.
    • (2007) Nat. Genet , vol.39 , pp. 1390-1396
    • Xu, N.1    Donohoe, M.2    Silva, S.3    Lee, J.4
  • 68
    • 33344461310 scopus 로고    scopus 로고
    • A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization
    • Sun, B., Deaton, A., and Lee, J. (2006) A transient heterochromatic state in Xist preempts X inactivation choice without RNA stabilization. Mol. Cell 21, 617-628.
    • (2006) Mol. Cell , vol.21 , pp. 617-628
    • Sun, B.1    Deaton, A.2    Lee, J.3
  • 69
    • 0035030004 scopus 로고    scopus 로고
    • Regulation of imprinted X-chromosome inactivation in mice by Tsix
    • Sado, T., Wang, Z., Sasaki, H., and Li, E. (2001) Regulation of imprinted X-chromosome inactivation in mice by Tsix. Development 128, 1275-1286.
    • (2001) Development , vol.128 , pp. 1275-1286
    • Sado, T.1    Wang, Z.2    Sasaki, H.3    Li, E.4
  • 70
    • 45549098196 scopus 로고    scopus 로고
    • Intersection of the RNA interference and X-inactivation pathways
    • Ogawa, Y., Sun, B., and Lee, J. (2008) Intersection of the RNA interference and X-inactivation pathways. Science 320, 1336-1341.
    • (2008) Science , vol.320 , pp. 1336-1341
    • Ogawa, Y.1    Sun, B.2    Lee, J.3
  • 71
    • 55349109963 scopus 로고    scopus 로고
    • Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome
    • Zhao, J., Sun, B., Erwin, J., Song, J., and Lee, J. (2008) Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome. Science 322, 750-756.
    • (2008) Science , vol.322 , pp. 750-756
    • Zhao, J.1    Sun, B.2    Erwin, J.3    Song, J.4    Lee, J.5
  • 72
    • 17744391429 scopus 로고    scopus 로고
    • Co-evolution of X-chromosome inactivation and imprinting in mammals
    • Reik, W. and Lewis, A. (2005) Co-evolution of X-chromosome inactivation and imprinting in mammals. Nat. Rev. Genet. 6, 403-410.
    • (2005) Nat. Rev. Genet , vol.6 , pp. 403-410
    • Reik, W.1    Lewis, A.2
  • 73
    • 0344393087 scopus 로고    scopus 로고
    • Genomic imprinting: Intricacies of epigenetic regulation in clusters
    • Verona, R., Mann, M., and Bartolomei, M. (2003) Genomic imprinting: intricacies of epigenetic regulation in clusters. Annu. Rev. Cell Dev. Biol. 19, 237-259.
    • (2003) Annu. Rev. Cell Dev. Biol , vol.19 , pp. 237-259
    • Verona, R.1    Mann, M.2    Bartolomei, M.3
  • 75
    • 33646598385 scopus 로고    scopus 로고
    • Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes
    • Mancini-Dinardo, D., Steele, S., Levorse, J., Ingram, R., and Tilghman, S. (2006) Elongation of the Kcnq1ot1 transcript is required for genomic imprinting of neighboring genes. Genes Dev. 20, 1268-1282.
    • (2006) Genes Dev , vol.20 , pp. 1268-1282
    • Mancini-Dinardo, D.1    Steele, S.2    Levorse, J.3    Ingram, R.4    Tilghman, S.5
  • 76
    • 38049045084 scopus 로고    scopus 로고
    • Two distinct mechanisms of silencing by the KvDMR1 imprinting control region
    • Shin, J., Fitzpatrick, G., and Higgins, M. (2008) Two distinct mechanisms of silencing by the KvDMR1 imprinting control region. EMBO J. 27, 168-178.
    • (2008) EMBO J , vol.27 , pp. 168-178
    • Shin, J.1    Fitzpatrick, G.2    Higgins, M.3
  • 77
    • 0036831864 scopus 로고    scopus 로고
    • Regional loss of imprinting and growth deficiency in mice with a targeted deletion of KvDMR1
    • Fitzpatrick, G., Soloway, P., and Higgins, M. (2002) Regional loss of imprinting and growth deficiency in mice with a targeted deletion of KvDMR1. Nat. Genet. 32, 426-431.
    • (2002) Nat. Genet , vol.32 , pp. 426-431
    • Fitzpatrick, G.1    Soloway, P.2    Higgins, M.3
  • 78
    • 9644281546 scopus 로고    scopus 로고
    • Imprinting along the Kcnq1 domain on mouse chromosome 7 involves repressive histone methylation and recruitment of Polycomb group complexes
    • Umlauf, D., Goto, Y., Cao, R., Cerqueira, F., Wagschal, A., Zhang, Y., and Feil, R. (2004) Imprinting along the Kcnq1 domain on mouse chromosome 7 involves repressive histone methylation and recruitment of Polycomb group complexes. Nat. Genet. 36, 1296-1300.
    • (2004) Nat. Genet , vol.36 , pp. 1296-1300
    • Umlauf, D.1    Goto, Y.2    Cao, R.3    Cerqueira, F.4    Wagschal, A.5    Zhang, Y.6    Feil, R.7
  • 79
    • 9644266664 scopus 로고    scopus 로고
    • Imprinting on distal chromosome 7 in the placenta involves repressive histone methylation independent of DNA methylation
    • Lewis, A., Mitsuya, K., Umlauf, D., Smith, P., Dean, W., Walter, J., Higgins, M., Feil, R., and Reik, W. (2004) Imprinting on distal chromosome 7 in the placenta involves repressive histone methylation independent of DNA methylation. Nat. Genet. 36, 1291-1295.
    • (2004) Nat. Genet , vol.36 , pp. 1291-1295
    • Lewis, A.1    Mitsuya, K.2    Umlauf, D.3    Smith, P.4    Dean, W.5    Walter, J.6    Higgins, M.7    Feil, R.8    Reik, W.9
  • 80
    • 55349100420 scopus 로고    scopus 로고
    • Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos
    • Terranova, R., Yokobayashi, S., Stadler, M., Otte, A., van Lohuizen, M., Orkin, S., and Peters, A. (2008) Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos. Dev. Cell 15, 668-679.
    • (2008) Dev. Cell , vol.15 , pp. 668-679
    • Terranova, R.1    Yokobayashi, S.2    Stadler, M.3    Otte, A.4    van Lohuizen, M.5    Orkin, S.6    Peters, A.7
  • 81
    • 36148967315 scopus 로고    scopus 로고
    • Suggestive evidence for chromosomal localization of non-coding RNA from imprinted LIT1
    • Murakami, K., Oshimura, M., and Kugoh, H. (2007) Suggestive evidence for chromosomal localization of non-coding RNA from imprinted LIT1. J. Hum. Genet. 52, 926-933.
    • (2007) J. Hum. Genet , vol.52 , pp. 926-933
    • Murakami, K.1    Oshimura, M.2    Kugoh, H.3
  • 82
    • 44349115087 scopus 로고    scopus 로고
    • Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region
    • Mohammad, F., Pandey, R., Nagano, T., Chakalova, L., Mondal, T., Fraser, P., and Kanduri, C. (2008) Kcnq1ot1/Lit1 noncoding RNA mediates transcriptional silencing by targeting to the perinucleolar region. Mol. Cell. Biol. 28, 3713-3728.
    • (2008) Mol. Cell. Biol , vol.28 , pp. 3713-3728
    • Mohammad, F.1    Pandey, R.2    Nagano, T.3    Chakalova, L.4    Mondal, T.5    Fraser, P.6    Kanduri, C.7
  • 84
    • 0037381174 scopus 로고    scopus 로고
    • Genome imprinting regulated by the mouse Polycomb group protein Eed
    • Mager, J., Montgomery, N., de Villena, F., and Magnuson, T. (2003) Genome imprinting regulated by the mouse Polycomb group protein Eed. Nat. Genet. 33, 502-507.
    • (2003) Nat. Genet , vol.33 , pp. 502-507
    • Mager, J.1    Montgomery, N.2    de Villena, F.3    Magnuson, T.4
  • 86
    • 56549111129 scopus 로고    scopus 로고
    • The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
    • Nagano, T., Mitchell, J., Sanz, L., Pauler, F., Ferguson-Smith, A., Feil, R., and Fraser, P. (2008) The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 322, 1717-1720.
    • (2008) Science , vol.322 , pp. 1717-1720
    • Nagano, T.1    Mitchell, J.2    Sanz, L.3    Pauler, F.4    Ferguson-Smith, A.5    Feil, R.6    Fraser, P.7
  • 87
    • 0037075032 scopus 로고    scopus 로고
    • The non-coding Air RNA is required for silencing autosomal imprinted genes
    • Sleutels, F., Zwart, R., and Barlow, D. (2002) The non-coding Air RNA is required for silencing autosomal imprinted genes. Nature 415, 810-813.
    • (2002) Nature , vol.415 , pp. 810-813
    • Sleutels, F.1    Zwart, R.2    Barlow, D.3
  • 88
    • 0035883743 scopus 로고    scopus 로고
    • Bidirectional action of the Igf2r imprint control element on upstream and downstream imprinted genes
    • Zwart, R., Sleutels, F., Wutz, A., Schinkel, A., and Barlow, D. (2001) Bidirectional action of the Igf2r imprint control element on upstream and downstream imprinted genes. Genes Dev. 15, 2361-2366.
    • (2001) Genes Dev , vol.15 , pp. 2361-2366
    • Zwart, R.1    Sleutels, F.2    Wutz, A.3    Schinkel, A.4    Barlow, D.5
  • 89
    • 1642535317 scopus 로고    scopus 로고
    • RNA fluorescence in situ hybridization tagging and recovery of associated proteins to analyze in vivo chromatin interactions
    • Chakalova, L., Carter, D., and Fraser, P. (2004) RNA fluorescence in situ hybridization tagging and recovery of associated proteins to analyze in vivo chromatin interactions. Methods Enzymol. 375, 479-493.
    • (2004) Methods Enzymol , vol.375 , pp. 479-493
    • Chakalova, L.1    Carter, D.2    Fraser, P.3
  • 90
    • 35748980277 scopus 로고    scopus 로고
    • Non-coding transcripts in the H19 imprinting control region mediate gene silencing in transgenic Drosophila
    • Schoenfelder, S., Smits, G., Fraser, P., Reik, W., and Paro, R. (2007) Non-coding transcripts in the H19 imprinting control region mediate gene silencing in transgenic Drosophila. EMBO Rep. 8, 1068-1073.
    • (2007) EMBO Rep , vol.8 , pp. 1068-1073
    • Schoenfelder, S.1    Smits, G.2    Fraser, P.3    Reik, W.4    Paro, R.5
  • 92
    • 66349106449 scopus 로고    scopus 로고
    • Regeneration, repair and remembering identity: The three Rs of Hox gene expression
    • Wang, K., Helms, J., and Chang, H. (2009) Regeneration, repair and remembering identity: the three Rs of Hox gene expression. Trends Cell Biol. 19, 268-275.
    • (2009) Trends Cell Biol , vol.19 , pp. 268-275
    • Wang, K.1    Helms, J.2    Chang, H.3
  • 93
    • 33749325080 scopus 로고    scopus 로고
    • Genomic evolution of Hox gene clusters
    • Lemons, D. and McGinnis, W. (2006) Genomic evolution of Hox gene clusters. Science 313, 1918-1922.
    • (2006) Science , vol.313 , pp. 1918-1922
    • Lemons, D.1    McGinnis, W.2
  • 94
    • 33646690307 scopus 로고    scopus 로고
    • The ABC of the BX-C: The bithorax complex explained
    • Maeda, R. and Karch, F. (2006) The ABC of the BX-C: the bithorax complex explained. Development 133, 1413-1422.
    • (2006) Development , vol.133 , pp. 1413-1422
    • Maeda, R.1    Karch, F.2
  • 97
    • 0037168637 scopus 로고    scopus 로고
    • Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex
    • Bae, E., Calhoun, V., Levine, M., Lewis, E., and Drewell, R. (2002) Characterization of the intergenic RNA profile at abdominal-A and Abdominal-B in the Drosophila bithorax complex. Proc. Natl. Acad. Sci. U. S. A. 99, 16847-16852.
    • (2002) Proc. Natl. Acad. Sci. U. S. A , vol.99 , pp. 16847-16852
    • Bae, E.1    Calhoun, V.2    Levine, M.3    Lewis, E.4    Drewell, R.5
  • 98
    • 0037168536 scopus 로고    scopus 로고
    • Transcription defines the embryonic domains of cis-regulatory activity at the Drosophila bithorax complex
    • Drewell, R., Bae, E., Burr, J., and Lewis, E. (2002) Transcription defines the embryonic domains of cis-regulatory activity at the Drosophila bithorax complex. Proc. Natl. Acad. Sci. U. S. A. 99, 16853-16858.
    • (2002) Proc. Natl. Acad. Sci. U. S. A , vol.99 , pp. 16853-16858
    • Drewell, R.1    Bae, E.2    Burr, J.3    Lewis, E.4
  • 99
    • 0036849525 scopus 로고    scopus 로고
    • Transcription activates repressed domains in the Drosophila bithorax complex
    • Bender, W. and Fitzgerald, D. (2002) Transcription activates repressed domains in the Drosophila bithorax complex. Development 129, 4923-4930.
    • (2002) Development , vol.129 , pp. 4923-4930
    • Bender, W.1    Fitzgerald, D.2
  • 100
    • 0036848563 scopus 로고    scopus 로고
    • Transcription through the iab-7 cis-regulatory domain of the bithorax complex interferes with maintenance of Polycomb-mediated silencing
    • Hogga, I. and Karch, F. (2002) Transcription through the iab-7 cis-regulatory domain of the bithorax complex interferes with maintenance of Polycomb-mediated silencing. Development 129, 4915-4922.
    • (2002) Development , vol.129 , pp. 4915-4922
    • Hogga, I.1    Karch, F.2
  • 101
    • 15444361900 scopus 로고    scopus 로고
    • Intergenic transcription through a polycomb group response element counteracts silencing
    • Schmitt, S., Prestel, M., and Paro, R. (2005) Intergenic transcription through a polycomb group response element counteracts silencing. Genes Dev. 19, 697-708.
    • (2005) Genes Dev , vol.19 , pp. 697-708
    • Schmitt, S.1    Prestel, M.2    Paro, R.3
  • 102
    • 33745685239 scopus 로고    scopus 로고
    • Unraveling cis-regulatory mechanisms at the abdominal-A and Abdominal-B genes in the Drosophila bithorax complex
    • Akbari, O., Bousum, A., Bae, E., and Drewell, R. (2006) Unraveling cis-regulatory mechanisms at the abdominal-A and Abdominal-B genes in the Drosophila bithorax complex. Dev. Biol. 293, 294-304.
    • (2006) Dev. Biol , vol.293 , pp. 294-304
    • Akbari, O.1    Bousum, A.2    Bae, E.3    Drewell, R.4
  • 103
    • 33644514069 scopus 로고    scopus 로고
    • Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax
    • Sanchez-Elsner, T., Gou, D., Kremmer, E., and Sauer, F. (2006) Noncoding RNAs of trithorax response elements recruit Drosophila Ash1 to Ultrabithorax. Science 311, 1118-1123.
    • (2006) Science , vol.311 , pp. 1118-1123
    • Sanchez-Elsner, T.1    Gou, D.2    Kremmer, E.3    Sauer, F.4
  • 104
    • 33845452031 scopus 로고    scopus 로고
    • Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference
    • Petruk, S., Sedkov, Y., Riley, K., Hodgson, J., Schweisguth, F., Hirose, S., Jaynes, J., Brock, H., and Mazo, A. (2006) Transcription of bxd noncoding RNAs promoted by trithorax represses Ubx in cis by transcriptional interference. Cell 127, 1209-1221.
    • (2006) Cell , vol.127 , pp. 1209-1221
    • Petruk, S.1    Sedkov, Y.2    Riley, K.3    Hodgson, J.4    Schweisguth, F.5    Hirose, S.6    Jaynes, J.7    Brock, H.8    Mazo, A.9
  • 105
    • 33746658155 scopus 로고    scopus 로고
    • Anatomic demarcation by positional variation in fibroblast gene expression programs
    • Rinn, J., Bondre, C., Gladstone, H., Brown, P., and Chang, H. (2006) Anatomic demarcation by positional variation in fibroblast gene expression programs. PLoS Genet. 2, e119.
    • (2006) PLoS Genet , vol.2
    • Rinn, J.1    Bondre, C.2    Gladstone, H.3    Brown, P.4    Chang, H.5
  • 107
    • 33846420626 scopus 로고    scopus 로고
    • Noncoding RNA synthesis and loss of Polycomb group repression accompanies the colinear activation of the human HOXA cluster
    • Sessa, L., Breiling, A., Lavorgna, G., Silvestri, L., Casari, G., and Orlando, V. (2007) Noncoding RNA synthesis and loss of Polycomb group repression accompanies the colinear activation of the human HOXA cluster. RNA 13, 223-239.
    • (2007) RNA , vol.13 , pp. 223-239
    • Sessa, L.1    Breiling, A.2    Lavorgna, G.3    Silvestri, L.4    Casari, G.5    Orlando, V.6
  • 108
    • 24644472515 scopus 로고    scopus 로고
    • Katayama, S., Tomaru, Y., Kasukawa, T., Waki, K., Nakanishi, M., Nakamura, M., Nishida, H., Yap, C., Suzuki, M., Kawai, J., Suzuki, H., Carninci, P., Hayashizaki, Y., Wells, C., Frith, M., Ravasi, T., Pang, K., Hallinan, J., Mattick, J., Hume, D., Lipovich, L., Batalov, S., Engström, P., Mizuno, Y., Faghihi, M., Sandelin, A., Chalk, A., Mottagui-Tabar, S., Liang, Z., Lenhard, B., and Wahlestedt, C. (2005) Antisense transcription in the mammalian transcriptome. Science 309, 1564-1566.
    • Katayama, S., Tomaru, Y., Kasukawa, T., Waki, K., Nakanishi, M., Nakamura, M., Nishida, H., Yap, C., Suzuki, M., Kawai, J., Suzuki, H., Carninci, P., Hayashizaki, Y., Wells, C., Frith, M., Ravasi, T., Pang, K., Hallinan, J., Mattick, J., Hume, D., Lipovich, L., Batalov, S., Engström, P., Mizuno, Y., Faghihi, M., Sandelin, A., Chalk, A., Mottagui-Tabar, S., Liang, Z., Lenhard, B., and Wahlestedt, C. (2005) Antisense transcription in the mammalian transcriptome. Science 309, 1564-1566.
  • 109
    • 55849137262 scopus 로고    scopus 로고
    • Extensive polycistronism and antisense transcription in the mammalian Hox clusters
    • Mainguy, G., Koster, J., Woltering, J., Jansen, H., and Durston, A. (2007) Extensive polycistronism and antisense transcription in the mammalian Hox clusters. PLoS One 2, e356.
    • (2007) PLoS One , vol.2
    • Mainguy, G.1    Koster, J.2    Woltering, J.3    Jansen, H.4    Durston, A.5
  • 110
    • 70349952171 scopus 로고    scopus 로고
    • rd, Voigt, P., Martin, S.R, Taylor, W.R, De Marco, V., Pirrotta, V., Reinberg, D., and Gamblin, S.J. (2009) Role of the polycomb protein EED in the propagation of repressive histone marks. Nature 461(7265), 762-767.
    • rd, Voigt, P., Martin, S.R, Taylor, W.R, De Marco, V., Pirrotta, V., Reinberg, D., and Gamblin, S.J. (2009) Role of the polycomb protein EED in the propagation of repressive histone marks. Nature 461(7265), 762-767.
  • 114
    • 15744387853 scopus 로고    scopus 로고
    • The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina
    • Young, T., Matsuda, T., and Cepko, C. (2005) The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina. Curr. Biol. 15, 501-512.
    • (2005) Curr. Biol , vol.15 , pp. 501-512
    • Young, T.1    Matsuda, T.2    Cepko, C.3
  • 115
    • 2942560254 scopus 로고    scopus 로고
    • Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene
    • Martens, J., Laprade, L., and Winston, F. (2004) Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene. Nature 429, 571-574.
    • (2004) Nature , vol.429 , pp. 571-574
    • Martens, J.1    Laprade, L.2    Winston, F.3
  • 116
    • 33750814968 scopus 로고    scopus 로고
    • Antisense transcription controls cell fate in Saccharomyces cerevisiae
    • Hongay, C., Grisafi, P., Galitski, T., and Fink, G. (2006) Antisense transcription controls cell fate in Saccharomyces cerevisiae. Cell 127, 735-745.
    • (2006) Cell , vol.127 , pp. 735-745
    • Hongay, C.1    Grisafi, P.2    Galitski, T.3    Fink, G.4
  • 117
    • 33846930357 scopus 로고    scopus 로고
    • Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript
    • Martianov, I., Ramadass, A., Serra Barros, A., Chow, N., and Akoulitchev, A. (2007) Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript. Nature 445, 666-670.
    • (2007) Nature , vol.445 , pp. 666-670
    • Martianov, I.1    Ramadass, A.2    Serra Barros, A.3    Chow, N.4    Akoulitchev, A.5
  • 118
    • 60549107869 scopus 로고    scopus 로고
    • Wrap53, a natural p53 antisense transcript required for p53 induction upon DNA damage
    • Mahmoudi, S., Henriksson, S., Corcoran, M., Méndez-Vidal, C., Wiman, K., and Farnebo, M. (2009) Wrap53, a natural p53 antisense transcript required for p53 induction upon DNA damage. Mol. Cell 33, 462-471.
    • (2009) Mol. Cell , vol.33 , pp. 462-471
    • Mahmoudi, S.1    Henriksson, S.2    Corcoran, M.3    Méndez-Vidal, C.4    Wiman, K.5    Farnebo, M.6
  • 119
    • 39549103642 scopus 로고    scopus 로고
    • Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock
    • Mariner, P., Walters, R., Espinoza, C., Drullinger, L., Wagner, S., Kugel, J., and Goodrich, J. (2008) Human Alu RNA is a modular transacting repressor of mRNA transcription during heat shock. Mol. Cell 29, 499-509.
    • (2008) Mol. Cell , vol.29 , pp. 499-509
    • Mariner, P.1    Walters, R.2    Espinoza, C.3    Drullinger, L.4    Wagner, S.5    Kugel, J.6    Goodrich, J.7
  • 120
    • 4344583992 scopus 로고    scopus 로고
    • B2 RNA binds directly to RNA polymerase II to repress transcript synthesis
    • Espinoza, C., Allen, T., Hieb, A., Kugel, J., and Goodrich, J. (2004) B2 RNA binds directly to RNA polymerase II to repress transcript synthesis. Nat. Struct. Mol. Biol. 11, 822-829.
    • (2004) Nat. Struct. Mol. Biol , vol.11 , pp. 822-829
    • Espinoza, C.1    Allen, T.2    Hieb, A.3    Kugel, J.4    Goodrich, J.5
  • 121
    • 29444457713 scopus 로고    scopus 로고
    • Rapid evolution of noncoding RNAs: Lack of conservation does not mean lack of function
    • Pang, K., Frith, M., and Mattick, J. (2006) Rapid evolution of noncoding RNAs: lack of conservation does not mean lack of function. Trends Genet. 22, 1-5.
    • (2006) Trends Genet , vol.22 , pp. 1-5
    • Pang, K.1    Frith, M.2    Mattick, J.3
  • 123
    • 60549114880 scopus 로고    scopus 로고
    • Widespread bidirectional promoters are the major source of cryptic transcripts in yeast
    • Neil, H., Malabat, C., d'Aubenton-Carafa, Y., Xu, Z., Steinmetz, L., and Jacquier, A. (2009) Widespread bidirectional promoters are the major source of cryptic transcripts in yeast. Nature 457, 1038-1042.
    • (2009) Nature , vol.457 , pp. 1038-1042
    • Neil, H.1    Malabat, C.2    d'Aubenton-Carafa, Y.3    Xu, Z.4    Steinmetz, L.5    Jacquier, A.6
  • 124
    • 0036842123 scopus 로고    scopus 로고
    • Predicting three-dimensional genome structure from transcriptional activity
    • Cook, P. (2002) Predicting three-dimensional genome structure from transcriptional activity. Nat. Genet. 32, 347-352.
    • (2002) Nat. Genet , vol.32 , pp. 347-352
    • Cook, P.1
  • 126
    • 33746076412 scopus 로고    scopus 로고
    • A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced
    • Chaumeil, J., Le Baccon, P., Wutz, A., and Heard, E. (2006) A novel role for Xist RNA in the formation of a repressive nuclear compartment into which genes are recruited when silenced. Genes Dev. 20, 2223-2237.
    • (2006) Genes Dev , vol.20 , pp. 2223-2237
    • Chaumeil, J.1    Le Baccon, P.2    Wutz, A.3    Heard, E.4
  • 127
    • 33646743365 scopus 로고    scopus 로고
    • The X chromosome is organized into a gene-rich outer rim and an internal core containing silenced nongenic sequences
    • Clemson, C., Hall, L., Byron, M., McNeil, J., and Lawrence, J. (2006) The X chromosome is organized into a gene-rich outer rim and an internal core containing silenced nongenic sequences. Proc. Natl. Acad. Sci. U. S. A. 103, 7688-7693.
    • (2006) Proc. Natl. Acad. Sci. U. S. A , vol.103 , pp. 7688-7693
    • Clemson, C.1    Hall, L.2    Byron, M.3    McNeil, J.4    Lawrence, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.