-
1
-
-
0027856029
-
From the chromosomal loops and the scaffold to the classic bands of metaphase chromosomes
-
Saitoh, Y. and Laemmli, U (1993) From the chromosomal loops and the scaffold to the classic bands of metaphase chromosomes. Cold Spring Harbor Symp. Quant. Biol. 58, 755-765
-
(1993)
Cold Spring Harbor Symp. Quant. Biol
, vol.58
, pp. 755-765
-
-
Saitoh, Y.1
Laemmli, U.2
-
2
-
-
0029148589
-
A chromomeric model for nuclear and chromosome structure
-
Cook, P. (1995) A chromomeric model for nuclear and chromosome structure. J. Cell Sci. 108, 2927-2935
-
(1995)
J. Cell Sci
, vol.108
, pp. 2927-2935
-
-
Cook, P.1
-
3
-
-
33845871732
-
Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus
-
Kumar, P., Bischof, C., Purbey, P., Notani, D., Urlaub, H., Dejean, A. and Galande, S. (2007) Functional interaction between PML and SATB1 regulates chromatin-loop architecture and transcription of the MHC class I locus. Nat. Cell Biol. 9, 45-56
-
(2007)
Nat. Cell Biol
, vol.9
, pp. 45-56
-
-
Kumar, P.1
Bischof, C.2
Purbey, P.3
Notani, D.4
Urlaub, H.5
Dejean, A.6
Galande, S.7
-
4
-
-
33847205083
-
What are the molecular ties that maintain genomic loops?
-
Marenduzzo, D., Faro-Trindade, I. and Cook, P. (2007) What are the molecular ties that maintain genomic loops? Trends Genet. 23, 126-133
-
(2007)
Trends Genet
, vol.23
, pp. 126-133
-
-
Marenduzzo, D.1
Faro-Trindade, I.2
Cook, P.3
-
5
-
-
0016764484
-
Supercoils in human DNA
-
Cook, P. and Brazell, I. (1975) Supercoils in human DNA. J. Cell Sci. 19, 261-279
-
(1975)
J. Cell Sci
, vol.19
, pp. 261-279
-
-
Cook, P.1
Brazell, I.2
-
6
-
-
0025135578
-
The size of chromatin loops in HeLa cells
-
Jackson, D., Dickinson, P. and Cook, P. (1990) The size of chromatin loops in HeLa cells. EMBO J. 9, 567-571
-
(1990)
EMBO J
, vol.9
, pp. 567-571
-
-
Jackson, D.1
Dickinson, P.2
Cook, P.3
-
8
-
-
0024334963
-
An enhancer stimulates transcription in trans when attached to the promoter via a protein bridge
-
Müeller-Storm, H., Sogo, J. and Schaffner, W. (1989) An enhancer stimulates transcription in trans when attached to the promoter via a protein bridge. Cell 58, 767-777
-
(1989)
Cell
, vol.58
, pp. 767-777
-
-
Müeller-Storm, H.1
Sogo, J.2
Schaffner, W.3
-
9
-
-
0037007221
-
GAGA can mediate enhancer function in trans by linking two separate DNA molecules
-
Mahmoudi, T., Katsani, K. and Verrijzer, C. (2002) GAGA can mediate enhancer function in trans by linking two separate DNA molecules. EMBO J. 21, 1775-1781
-
(2002)
EMBO J
, vol.21
, pp. 1775-1781
-
-
Mahmoudi, T.1
Katsani, K.2
Verrijzer, C.3
-
10
-
-
0019830601
-
RNA is synthesized at the nuclear cage
-
Jackson, D., McCready, S. and Cook, P. (1981) RNA is synthesized at the nuclear cage. Nature 292, 552-555
-
(1981)
Nature
, vol.292
, pp. 552-555
-
-
Jackson, D.1
McCready, S.2
Cook, P.3
-
11
-
-
0027499230
-
Visualization of focal sites of transcription within human nuclei
-
Jackson, D., Hassan, A., Errington, R. and Cook, P. (1993) Visualization of focal sites of transcription within human nuclei. EMBO J. 12, 1059-1065
-
(1993)
EMBO J
, vol.12
, pp. 1059-1065
-
-
Jackson, D.1
Hassan, A.2
Errington, R.3
Cook, P.4
-
12
-
-
0027305616
-
Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus
-
Wansink, D., Schul, W., van der Kraan, I., van Steensel, B., van Driel, R. and de Jong, L. (1993) Fluorescent labeling of nascent RNA reveals transcription by RNA polymerase II in domains scattered throughout the nucleus. J. Cell Biol. 122, 283-293
-
(1993)
J. Cell Biol
, vol.122
, pp. 283-293
-
-
Wansink, D.1
Schul, W.2
van der Kraan, I.3
van Steensel, B.4
van Driel, R.5
de Jong, L.6
-
13
-
-
0031813779
-
Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei
-
Jackson, D., Iborra, F., Manders, E. and Cook, P. (1998) Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei. Mol. Biol. Cell 9, 1523-1536
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 1523-1536
-
-
Jackson, D.1
Iborra, F.2
Manders, E.3
Cook, P.4
-
14
-
-
33845295824
-
The depletion attraction: An underappreciated force driving cellular organization
-
Marenduzzo, D., Finan, K. and Cook, P. (2006) The depletion attraction: an underappreciated force driving cellular organization. J. Cell Biol. 175, 681-686
-
(2006)
J. Cell Biol
, vol.175
, pp. 681-686
-
-
Marenduzzo, D.1
Finan, K.2
Cook, P.3
-
15
-
-
0037083376
-
Capturing chromosome conformation
-
Dekker, J., Rippe, K., Dekker, M. and Kleckner, N. (2002) Capturing chromosome conformation. Science 295, 1306-1311
-
(2002)
Science
, vol.295
, pp. 1306-1311
-
-
Dekker, J.1
Rippe, K.2
Dekker, M.3
Kleckner, N.4
-
16
-
-
0036923833
-
Looping and interaction between hypersensitive sites in the active β-globin locus
-
Tolhuis, B., Palstra, R., Splinter, E., Grosveld, F. and de Laal, W. (2002) Looping and interaction between hypersensitive sites in the active β-globin locus. Mol. Cell 10, 1453-1465
-
(2002)
Mol. Cell
, vol.10
, pp. 1453-1465
-
-
Tolhuis, B.1
Palstra, R.2
Splinter, E.3
Grosveld, F.4
de Laal, W.5
-
17
-
-
5444243359
-
Active genes dynamically colocalize to shared sites of ongoing transcription
-
Osborne, C., Chakalova, L., Brown, K., Carter, D., Horton, A., Debrand, E., Goyenechea, B., Mitchell, J., Lopes, S., Reik, W. and Fraser, P. (2004) Active genes dynamically colocalize to shared sites of ongoing transcription. Nat. Genet. 36, 1065-1071
-
(2004)
Nat. Genet
, vol.36
, pp. 1065-1071
-
-
Osborne, C.1
Chakalova, L.2
Brown, K.3
Carter, D.4
Horton, A.5
Debrand, E.6
Goyenechea, B.7
Mitchell, J.8
Lopes, S.9
Reik, W.10
Fraser, P.11
-
18
-
-
34548210885
-
Myc dynamically and preferentially relocates to a transcription factory occupied by Igh
-
Osborne, C., Chalkalova, L., Mitchell, J., Horton, A., Wood, A., Bolland, D., Corcoran, A. and Fraser, P. (2007) Myc dynamically and preferentially relocates to a transcription factory occupied by Igh. PLoS Biol. 5, e192
-
(2007)
PLoS Biol
, vol.5
-
-
Osborne, C.1
Chalkalova, L.2
Mitchell, J.3
Horton, A.4
Wood, A.5
Bolland, D.6
Corcoran, A.7
Fraser, P.8
-
19
-
-
0037338603
-
Protein:protein interactions and the pairing of boundary elements in vivo
-
Blanton, J., Gaszner, M. and Schedl, P. (2003) Protein:protein interactions and the pairing of boundary elements in vivo. Genes Dev. 17, 664-675
-
(2003)
Genes Dev
, vol.17
, pp. 664-675
-
-
Blanton, J.1
Gaszner, M.2
Schedl, P.3
-
20
-
-
3543018516
-
Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops
-
Murrell, A., Heeson, S. and Reik, W. (2004) Interaction between differentially methylated regions partitions the imprinted genes Igf2 and H19 into parent-specific chromatin loops. Nat. Genet. 36, 889-893
-
(2004)
Nat. Genet
, vol.36
, pp. 889-893
-
-
Murrell, A.1
Heeson, S.2
Reik, W.3
-
21
-
-
5444237577
-
Long-range intrachromosomal interactions in the T helper type 2 cytokine locus
-
Spilianakis, C. and Flavell, R. (2004) Long-range intrachromosomal interactions in the T helper type 2 cytokine locus. Nat. Immunol. 5, 1017-1027
-
(2004)
Nat. Immunol
, vol.5
, pp. 1017-1027
-
-
Spilianakis, C.1
Flavell, R.2
-
22
-
-
0036898580
-
Long-range chromatin regulatory interactions in vivo
-
Carter, D., Chakalova, L., Osborne, C., Dai, Y. and Fraser, P. (2002) Long-range chromatin regulatory interactions in vivo. Nat. Genet. 32, 623-626
-
(2002)
Nat. Genet
, vol.32
, pp. 623-626
-
-
Carter, D.1
Chakalova, L.2
Osborne, C.3
Dai, Y.4
Fraser, P.5
-
23
-
-
33746423865
-
Locus control region transcription plays an active role in long-range gene activation
-
Ho, Y., Elefant, F., Liebhaber, S. and Cooke, N. (2006) Locus control region transcription plays an active role in long-range gene activation. Mol. Cell 23, 365-375
-
(2006)
Mol. Cell
, vol.23
, pp. 365-375
-
-
Ho, Y.1
Elefant, F.2
Liebhaber, S.3
Cooke, N.4
-
24
-
-
0344897665
-
Nongenic transcription, gene regulation and action at a distance
-
Cook, P. (2003) Nongenic transcription, gene regulation and action at a distance. J. Cell Sci. 116, 4483-4491
-
(2003)
J. Cell Sci
, vol.116
, pp. 4483-4491
-
-
Cook, P.1
-
25
-
-
33750212321
-
Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C)
-
Simonis, M., Klous, P., Splinter, E., Moshkin, Y., Willemsen, R., de Wit, E, van Steensel, B. and de Laat, W. (2006) Nuclear organization of active and inactive chromatin domains uncovered by chromosome conformation capture-on-chip (4C). Nat. Genet. 38, 1348-1354
-
(2006)
Nat. Genet
, vol.38
, pp. 1348-1354
-
-
Simonis, M.1
Klous, P.2
Splinter, E.3
Moshkin, Y.4
Willemsen, R.5
de Wit, E.6
van Steensel, B.7
de Laat, W.8
-
26
-
-
0030589556
-
The topology of transcription by immobilized polymerases
-
Iborra, F.J., Pombo, A., McManus, J., Jackson, D.A. and Cook, P.R. (1996) The topology of transcription by immobilized polymerases. Exp. Cell Res. 229, 167-173
-
(1996)
Exp. Cell Res
, vol.229
, pp. 167-173
-
-
Iborra, F.J.1
Pombo, A.2
McManus, J.3
Jackson, D.A.4
Cook, P.R.5
-
27
-
-
38149133051
-
Transcription factories are nuclear subcompartments that remain in the absence of transcription
-
Mitchell, J. and Fraser, P. (2008) Transcription factories are nuclear subcompartments that remain in the absence of transcription. Genes Dev. 22, 20-25
-
(2008)
Genes Dev
, vol.22
, pp. 20-25
-
-
Mitchell, J.1
Fraser, P.2
-
28
-
-
5444255213
-
The active spatial organization of the β-globin locus requires the transcription factor EKLF
-
Drissen, R., Palstra, R., Gillemans, N., Splinter, E., Grosveld, F., Philipsen, S. and de Laat, W. (2004) The active spatial organization of the β-globin locus requires the transcription factor EKLF. Genes Dev. 18, 2485-2490
-
(2004)
Genes Dev
, vol.18
, pp. 2485-2490
-
-
Drissen, R.1
Palstra, R.2
Gillemans, N.3
Splinter, E.4
Grosveld, F.5
Philipsen, S.6
de Laat, W.7
-
29
-
-
13244272059
-
Proximity among distant regulatory elements at the β-globin locus requires GATA-1 and FOG-1
-
Vakoc, C., Letting, D., Gheldof, N., Sawado, T., Bender, M., Groudine, M., Weiss, M., Dekker, J. and Blobel, G. (2005) Proximity among distant regulatory elements at the β-globin locus requires GATA-1 and FOG-1. Mol. Cell 17, 453-462
-
(2005)
Mol. Cell
, vol.17
, pp. 453-462
-
-
Vakoc, C.1
Letting, D.2
Gheldof, N.3
Sawado, T.4
Bender, M.5
Groudine, M.6
Weiss, M.7
Dekker, J.8
Blobel, G.9
-
30
-
-
34447536151
-
β-Globin active chromatin Hub formation in differentiating erythroid cells and in p45 NF-E2 knock-out mice
-
Kooren, J., Palstra, R., Klous, P., Splinter, E., von Lindern, M., Grosveld, F. and de Laat, W. (2007) β-Globin active chromatin Hub formation in differentiating erythroid cells and in p45 NF-E2 knock-out mice. J. Biol. Chem. 282, 16544-16552
-
(2007)
J. Biol. Chem
, vol.282
, pp. 16544-16552
-
-
Kooren, J.1
Palstra, R.2
Klous, P.3
Splinter, E.4
von Lindern, M.5
Grosveld, F.6
de Laat, W.7
-
31
-
-
33746472337
-
Probing long-distance regulatory interactions in the Orosophila melanogoster bithorax complex using Dam identification
-
Cléard, F., Moshkin, Y., Karch, F. and Maeda, R. (2006) Probing long-distance regulatory interactions in the Orosophila melanogoster bithorax complex using Dam identification. Nat. Genet. 38, 931-935
-
(2006)
Nat. Genet
, vol.38
, pp. 931-935
-
-
Cléard, F.1
Moshkin, Y.2
Karch, F.3
Maeda, R.4
-
32
-
-
0033844945
-
Initiation of nucleolar assembly is independent of RNA polymerase I transcription
-
Dousset, T., Wang, C., Verheggen, C., Chen, D., Hernandez-Verdun, D. and Huang, S. (2000) Initiation of nucleolar assembly is independent of RNA polymerase I transcription. Mol. Biol. Cell 11, 2705-2717
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 2705-2717
-
-
Dousset, T.1
Wang, C.2
Verheggen, C.3
Chen, D.4
Hernandez-Verdun, D.5
Huang, S.6
-
33
-
-
0030006048
-
The ΓDNA transcription machinery is assembled during mitosis in active NORs and absent in inactive NORs
-
Roussel, P., André, C., Comai, L. and Hernandez-Verdun, D. (1996) The ΓDNA transcription machinery is assembled during mitosis in active NORs and absent in inactive NORs. J. Cell Biol. 133, 235-246
-
(1996)
J. Cell Biol
, vol.133
, pp. 235-246
-
-
Roussel, P.1
André, C.2
Comai, L.3
Hernandez-Verdun, D.4
-
34
-
-
0028256471
-
Site of transcription of ribosomal RNA and intranucleolar structure in HeLa cells
-
Hozák, P., Cook, P., Schöfer, C., Mosgöller, W. and Wachtler, F. (1994) Site of transcription of ribosomal RNA and intranucleolar structure in HeLa cells. J. Cell Sci. 107, 639-648
-
(1994)
J. Cell Sci
, vol.107
, pp. 639-648
-
-
Hozák, P.1
Cook, P.2
Schöfer, C.3
Mosgöller, W.4
Wachtler, F.5
-
35
-
-
0033561153
-
Regional specialization in human nuclei: Visualization of discrete sites of transcription by RNA polymerase III
-
Pombo, A., Jackson, D., Hollinshead, M., Wang, Z., Roeder, R. and Cook, P. (1999) Regional specialization in human nuclei: visualization of discrete sites of transcription by RNA polymerase III. EMBO J. 18, 2241-2253
-
(1999)
EMBO J
, vol.18
, pp. 2241-2253
-
-
Pombo, A.1
Jackson, D.2
Hollinshead, M.3
Wang, Z.4
Roeder, R.5
Cook, P.6
-
36
-
-
0032536858
-
Regional and temporal specialization in the nucleus: A transcriptionally-active nuclear domain rich in PTF, Oct1 and PIKA antigens associates with specific chromosomes early in the cell cycle
-
Pombo, A., Cuello, P., Schul, W., Yoon, J., Roeder, R., Cook, P. and Murphy, S. (1998) Regional and temporal specialization in the nucleus: a transcriptionally-active nuclear domain rich in PTF, Oct1 and PIKA antigens associates with specific chromosomes early in the cell cycle. EMBO J. 17, 1768-1778
-
(1998)
EMBO J
, vol.17
, pp. 1768-1778
-
-
Pombo, A.1
Cuello, P.2
Schul, W.3
Yoon, J.4
Roeder, R.5
Cook, P.6
Murphy, S.7
-
37
-
-
33646835742
-
Specialized transcription factories
-
Bartlett, J., Blagojevic, J., Carter, D., Eskiw, C., Fromaget, M., Job, C., Shamsher, M., Trindade, I.F., Xu, M. and Cook, P. (2006) Specialized transcription factories. Biochem. Soc. Symp. 73, 67-75
-
(2006)
Biochem. Soc. Symp
, vol.73
, pp. 67-75
-
-
Bartlett, J.1
Blagojevic, J.2
Carter, D.3
Eskiw, C.4
Fromaget, M.5
Job, C.6
Shamsher, M.7
Trindade, I.F.8
Xu, M.9
Cook, P.10
-
38
-
-
44149106396
-
Similar active genes cluster in specialized transcription factories
-
Xu, M. and Cook, P.R. (2008) Similar active genes cluster in specialized transcription factories. J. Cell Biol. 181, 615-623
-
(2008)
J. Cell Biol
, vol.181
, pp. 615-623
-
-
Xu, M.1
Cook, P.R.2
-
39
-
-
0035985190
-
Recruitment of dioxin receptor to active transcription sites
-
Elbi, C., Misteli, T. and Hager, G. (2002) Recruitment of dioxin receptor to active transcription sites. Mol. Biol. Cell 13, 2001-2015
-
(2002)
Mol. Biol. Cell
, vol.13
, pp. 2001-2015
-
-
Elbi, C.1
Misteli, T.2
Hager, G.3
-
40
-
-
0343683416
-
Nuclear distribution of transcription factors in relation to sites of transcription and RNA polymerase II
-
Grande, M., van der Kraan, I., de Jong, L. and van Driel, R. (1997) Nuclear distribution of transcription factors in relation to sites of transcription and RNA polymerase II. J. Cell Sci. 110, 1781-1791
-
(1997)
J. Cell Sci
, vol.110
, pp. 1781-1791
-
-
Grande, M.1
van der Kraan, I.2
de Jong, L.3
van Driel, R.4
-
41
-
-
24344445230
-
Differential intranuclear organization of transcription factors Sp1 and Sp3
-
He, S., Sun, J., Li, L. and Davie, J. (2005) Differential intranuclear organization of transcription factors Sp1 and Sp3. Mol. Biol. Cell 16, 4073-4083
-
(2005)
Mol. Biol. Cell
, vol.16
, pp. 4073-4083
-
-
He, S.1
Sun, J.2
Li, L.3
Davie, J.4
-
42
-
-
33745632115
-
A conserved organization of transcription during embryonic stem cell differentiation and in cells with high C value
-
Faro-Trindade, I. and Cook, P. (2006) A conserved organization of transcription during embryonic stem cell differentiation and in cells with high C value. Mol. Biol. Cell 17, 2910-2920
-
(2006)
Mol. Biol. Cell
, vol.17
, pp. 2910-2920
-
-
Faro-Trindade, I.1
Cook, P.2
-
43
-
-
47649111278
-
RNA polymerase II activity is located on the surface of protein-rich transcription factories
-
Eskiw, C.H., Rapp, A., Carter, D.R.F. and Code, P.R. (2008) RNA polymerase II activity is located on the surface of protein-rich transcription factories. J. Cell Sci. 121, 1999-2007
-
(2008)
J. Cell Sci
, vol.121
, pp. 1999-2007
-
-
Eskiw, C.H.1
Rapp, A.2
Carter, D.R.F.3
Code, P.R.4
-
44
-
-
33646729244
-
Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations
-
Branco, M. and Pombo, A. (2006) Intermingling of chromosome territories in interphase suggests role in translocations and transcription-dependent associations. PLoS Biol. 4, e138
-
(2006)
PLoS Biol
, vol.4
-
-
Branco, M.1
Pombo, A.2
-
45
-
-
33746228114
-
Interchromosomal interactions and olfactory receptor choice
-
Lomvardas, S., Barnea, G., Pisapia, D., Mendelsohn, M., Kirkland, J. and Axel, R. (2006) Interchromosomal interactions and olfactory receptor choice. Cell 126, 403-413
-
(2006)
Cell
, vol.126
, pp. 403-413
-
-
Lomvardas, S.1
Barnea, G.2
Pisapia, D.3
Mendelsohn, M.4
Kirkland, J.5
Axel, R.6
-
46
-
-
0033553877
-
Differences in the localization and morphology of chromosomes in the human nucleus
-
Croft, J., Bridger, J., Boyle, S., Perry, P., Teague, P. and Bickmore, W. (1999) Differences in the localization and morphology of chromosomes in the human nucleus. J. Cell Biol. 145, 1119-1131
-
(1999)
J. Cell Biol
, vol.145
, pp. 1119-1131
-
-
Croft, J.1
Bridger, J.2
Boyle, S.3
Perry, P.4
Teague, P.5
Bickmore, W.6
-
47
-
-
0030919277
-
The transcriptional basis of chromosome pairing
-
Cook, P. (1997) The transcriptional basis of chromosome pairing. J. Cell Sci. 110, 1033-1040
-
(1997)
J. Cell Sci
, vol.110
, pp. 1033-1040
-
-
Cook, P.1
-
48
-
-
0033546210
-
The organization of replication and transcription
-
Cook, P. (1999) The organization of replication and transcription. Science 284, 1790-1795
-
(1999)
Science
, vol.284
, pp. 1790-1795
-
-
Cook, P.1
-
49
-
-
0015491070
-
Morphological studies of transcription
-
Miller, O.J. and Bakken, A. (1972) Morphological studies of transcription. Acta Endocrinol. Suppl. 168, 155-177
-
(1972)
Acta Endocrinol. Suppl
, vol.168
, pp. 155-177
-
-
Miller, O.J.1
Bakken, A.2
-
50
-
-
0036842123
-
Predicting three-dimensional genome structure from transcriptional activity
-
Cook, P. (2002) Predicting three-dimensional genome structure from transcriptional activity. Nat. Genet. 32, 347-352
-
(2002)
Nat. Genet
, vol.32
, pp. 347-352
-
-
Cook, P.1
|