-
1
-
-
0032546579
-
Transfer RNA-pseudouridine synthetase Pus1 of Saccharomyces cerevisiae contains one atom of zinc essential for its native conformation and tRNA recognition
-
Arluison V, Hountondji C, Robert B, Grosjean H. 1998. Transfer RNA-pseudouridine synthetase Pus1 of Saccharomyces cerevisiae contains one atom of zinc essential for its native conformation and tRNA recognition. Biochemistry 37: 7268-7276.
-
(1998)
Biochemistry
, vol.37
, pp. 7268-7276
-
-
Arluison, V.1
Hountondji, C.2
Robert, B.3
Grosjean, H.4
-
2
-
-
0033546399
-
Pseudouridine synthetase Pus1 of Saccharomyces cerevisiae: Kinetic characterisation, tRNA structural requirement and real-time analysis of its complex with tRNA
-
Arluison V, Buckle M, Grosjean H. 1999. Pseudouridine synthetase Pus1 of Saccharomyces cerevisiae: Kinetic characterisation, tRNA structural requirement and real-time analysis of its complex with tRNA. J Mol Biol 289: 491-502.
-
(1999)
J Mol Biol
, vol.289
, pp. 491-502
-
-
Arluison, V.1
Buckle, M.2
Grosjean, H.3
-
3
-
-
33746504845
-
A previously unidentified activity of yeast and mouse RNA:pseudouridine synthases 1 (Pus1p) on tRNAs
-
Behm-Ansmant I, Massenet S, Immel F, Patton JR, Motorin Y, Branlant C. 2006. A previously unidentified activity of yeast and mouse RNA:pseudouridine synthases 1 (Pus1p) on tRNAs. RNA 12: 1583-1593.
-
(2006)
RNA
, vol.12
, pp. 1583-1593
-
-
Behm-Ansmant, I.1
Massenet, S.2
Immel, F.3
Patton, J.R.4
Motorin, Y.5
Branlant, C.6
-
4
-
-
0033012696
-
Cloning and characterization of a mammalian pseudouridine synthase
-
Chen J, Patton JR. 1999. Cloning and characterization of a mammalian pseudouridine synthase. RNA 5: 409-419.
-
(1999)
RNA
, vol.5
, pp. 409-419
-
-
Chen, J.1
Patton, J.R.2
-
5
-
-
0034528502
-
Mouse pseudouridine synthase 1: Gene structure and alternative splicing of pre-mRNA
-
Chen J, Patton JR. 2000. Mouse pseudouridine synthase 1: Gene structure and alternative splicing of pre-mRNA. Biochem J 352: 465-473.
-
(2000)
Biochem J
, vol.352
, pp. 465-473
-
-
Chen, J.1
Patton, J.R.2
-
6
-
-
33744797914
-
Conformational heterogeneity in RNA polymerase observed by single-pair FRET microscopy
-
Coban O, Lamb DC, Zaychikov E, Heumann H, Nienhaus GU. 2006. Conformational heterogeneity in RNA polymerase observed by single-pair FRET microscopy. Biophys J 90: 4605-4617.
-
(2006)
Biophys J
, vol.90
, pp. 4605-4617
-
-
Coban, O.1
Lamb, D.C.2
Zaychikov, E.3
Heumann, H.4
Nienhaus, G.U.5
-
8
-
-
65649140052
-
Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase
-
Duan J, Li L, Lu J, Wang W, Ye K. 2009. Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase. Mol Cell 34: 427-439.
-
(2009)
Mol Cell
, vol.34
, pp. 427-439
-
-
Duan, J.1
Li, L.2
Lu, J.3
Wang, W.4
Ye, K.5
-
9
-
-
0033987499
-
The structural basis for tRNA recognition and pseudouridine formation by pseudouridine synthase I
-
Foster PG, Huang L, Santi DV, Stroud RM. 2000. The structural basis for tRNA recognition and pseudouridine formation by pseudouridine synthase I. Nat Struct Biol 7: 23-27.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 23-27
-
-
Foster, P.G.1
Huang, L.2
Santi, D.V.3
Stroud, R.M.4
-
10
-
-
34548801413
-
Detection of enzymatic activity of transfer RNA modification enzymes using radiolabeled tRNA substrates
-
Grosjean H, Droogmans L, Roovers M, Keith G. 2007. Detection of enzymatic activity of transfer RNA modification enzymes using radiolabeled tRNA substrates. Methods Enzymol 425: 55-101.
-
(2007)
Methods Enzymol
, vol.425
, pp. 55-101
-
-
Grosjean, H.1
Droogmans, L.2
Roovers, M.3
Keith, G.4
-
11
-
-
57049151350
-
Archaeal Pus10 proteins can produce both pseudouridine 54 and 55 in tRNA
-
Gurha P, Gupta R. 2008. Archaeal Pus10 proteins can produce both pseudouridine 54 and 55 in tRNA. RNA 14: 2521-2527.
-
(2008)
RNA
, vol.14
, pp. 2521-2527
-
-
Gurha, P.1
Gupta, R.2
-
12
-
-
41649102484
-
Evidence that tRNA modifying enzymes are important in vivo targets for 5-fluorouracil in yeast
-
Gustavsson M, Ronne H. 2008. Evidence that tRNA modifying enzymes are important in vivo targets for 5-fluorouracil in yeast. RNA 14: 666-674.
-
(2008)
RNA
, vol.14
, pp. 666-674
-
-
Gustavsson, M.1
Ronne, H.2
-
13
-
-
9744262505
-
The roles of the essential Asp-48 and highly conserved His-43 elucidated by the pH dependence of the pseudouridine synthase TruB
-
Hamilton CS, Spedaliere CJ, Ginter JM, Johnston MV, Mueller EG. 2005. The roles of the essential Asp-48 and highly conserved His-43 elucidated by the pH dependence of the pseudouridine synthase TruB. Arch Biochem Biophys 433: 322-334.
-
(2005)
Arch Biochem Biophys
, vol.433
, pp. 322-334
-
-
Hamilton, C.S.1
Spedaliere, C.J.2
Ginter, J.M.3
Johnston, M.V.4
Mueller, E.G.5
-
14
-
-
33749357492
-
Mechanistic investigations of the pseudouridine synthase RluA using RNA containing 5-fluorouridine
-
Hamilton CS, Greco TM, Vizthum CA, Ginter JM, Johnston MV, Mueller EG. 2006. Mechanistic investigations of the pseudouridine synthase RluA using RNA containing 5-fluorouridine. Biochemistry 45: 12029-12038.
-
(2006)
Biochemistry
, vol.45
, pp. 12029-12038
-
-
Hamilton, C.S.1
Greco, T.M.2
Vizthum, C.A.3
Ginter, J.M.4
Johnston, M.V.5
Mueller, E.G.6
-
15
-
-
0034556628
-
Cloning and characterization of the Schizosaccharomyces pombe tRNA:pseudouridine synthase Pus1p
-
Hellmuth K, Grosjean H, Motorin Y, Deinert K, Hurt E, Simos G. 2000. Cloning and characterization of the Schizosaccharomyces pombe tRNA:pseudouridine synthase Pus1p. Nucleic Acids Res 28: 4604-4610.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 4604-4610
-
-
Hellmuth, K.1
Grosjean, H.2
Motorin, Y.3
Deinert, K.4
Hurt, E.5
Simos, G.6
-
16
-
-
32644447756
-
Post-transcriptional nucleotide modification and alternative folding of RNA
-
Helm M. 2006. Post-transcriptional nucleotide modification and alternative folding of RNA. Nucleic Acids Res 34: 721-733.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 721-733
-
-
Helm, M.1
-
17
-
-
1542358790
-
Nuclear control of cloverleaf structure of human mitochondrial tRNA(Lys)
-
Helm M, Attardi G. 2004. Nuclear control of cloverleaf structure of human mitochondrial tRNA(Lys). J Mol Biol 337: 545-560.
-
(2004)
J Mol Biol
, vol.337
, pp. 545-560
-
-
Helm, M.1
Attardi, G.2
-
18
-
-
0032052242
-
The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA
-
Helm M, Brule H, Degoul F, Cepanec C, Leroux JP, Giege R, Florentz C. 1998. The presence of modified nucleotides is required for cloverleaf folding of a human mitochondrial tRNA. Nucleic Acids Res 26: 1636-1643.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1636-1643
-
-
Helm, M.1
Brule, H.2
Degoul, F.3
Cepanec, C.4
Leroux, J.P.5
Giege, R.6
Florentz, C.7
-
19
-
-
58849135321
-
-
Hengesbach M, Kobitski A, Voigts-Hoffmann F, Frauer C, Nienhaus GU, Helm M. 2008a. RNA intramolecular dynamics by single-molecule FRET. In Current protocols in nucleic acid chemistry. pp. 11.12.1-11.12.22. Wiley, New York.
-
Hengesbach M, Kobitski A, Voigts-Hoffmann F, Frauer C, Nienhaus GU, Helm M. 2008a. RNA intramolecular dynamics by single-molecule FRET. In Current protocols in nucleic acid chemistry. pp. 11.12.1-11.12.22. Wiley, New York.
-
-
-
-
20
-
-
38049039329
-
Use of DNAzymes for site-specific analysis of ribonucleotide modifications
-
Hengesbach M, Meusburger M, Lyko F, Helm M. 2008b. Use of DNAzymes for site-specific analysis of ribonucleotide modifications. RNA 14: 180-187.
-
(2008)
RNA
, vol.14
, pp. 180-187
-
-
Hengesbach, M.1
Meusburger, M.2
Lyko, F.3
Helm, M.4
-
21
-
-
0035966271
-
Cocrystal structure of a tRNA ψ55 pseudouridine synthase: Nucleotide flipping by an RNA-modifying enzyme
-
Hoang C, Ferré-D'Amaré AR. 2001. Cocrystal structure of a tRNA ψ55 pseudouridine synthase: Nucleotide flipping by an RNA-modifying enzyme. Cell 107: 929-939.
-
(2001)
Cell
, vol.107
, pp. 929-939
-
-
Hoang, C.1
Ferré-D'Amaré, A.R.2
-
22
-
-
33751013845
-
Crystal structure of pseudouridine synthase RluA: Indirect sequence readout through protein-induced RNA structure
-
Hoang C, Chen J, Vizthum CA, Kandel JM, Hamilton CS, Mueller EG, Ferré-D'Amaré AR. 2006. Crystal structure of pseudouridine synthase RluA: Indirect sequence readout through protein-induced RNA structure. Mol Cell 24: 535-545.
-
(2006)
Mol Cell
, vol.24
, pp. 535-545
-
-
Hoang, C.1
Chen, J.2
Vizthum, C.A.3
Kandel, J.M.4
Hamilton, C.S.5
Mueller, E.G.6
Ferré-D'Amaré, A.R.7
-
23
-
-
50949097255
-
RNA-based 5-fluorouracil toxicity requires the pseudouridylation activity of Cbf5p
-
Hoskins J, Butler JS. 2008. RNA-based 5-fluorouracil toxicity requires the pseudouridylation activity of Cbf5p. Genetics 179: 323-330.
-
(2008)
Genetics
, vol.179
, pp. 323-330
-
-
Hoskins, J.1
Butler, J.S.2
-
24
-
-
0032488657
-
A conserved aspartate of tRNA pseudouridine synthase is essential for activity and a probable nucleophilic catalyst
-
Huang L, Pookanjanatavip M, Gu X, Santi DV. 1998. A conserved aspartate of tRNA pseudouridine synthase is essential for activity and a probable nucleophilic catalyst. Biochemistry 37: 344-351.
-
(1998)
Biochemistry
, vol.37
, pp. 344-351
-
-
Huang, L.1
Pookanjanatavip, M.2
Gu, X.3
Santi, D.V.4
-
25
-
-
33845984589
-
Substrate recognition by RNA 5-methyluridine methyltransferases and pseudouridine synthases: A structural perspective
-
Hur S, Stroud RM, Finer-Moore J. 2006. Substrate recognition by RNA 5-methyluridine methyltransferases and pseudouridine synthases: A structural perspective. J Biol Chem 281: 38969-38973.
-
(2006)
J Biol Chem
, vol.281
, pp. 38969-38973
-
-
Hur, S.1
Stroud, R.M.2
Finer-Moore, J.3
-
26
-
-
0038613099
-
Alternative tertiary structure of tRNA for recognition by a post-transcriptional modification enzyme
-
Ishitani R, Nureki O, Nameki N, Okada N, Nishimura S, Yokoyama S. 2003. Alternative tertiary structure of tRNA for recognition by a post-transcriptional modification enzyme. Cell 113: 383-394.
-
(2003)
Cell
, vol.113
, pp. 383-394
-
-
Ishitani, R.1
Nureki, O.2
Nameki, N.3
Okada, N.4
Nishimura, S.5
Yokoyama, S.6
-
27
-
-
0037407933
-
Identification of the yeast gene encoding the tRNA m1G methyltransferase responsible for modification at position 9
-
Jackman JE, Montange RK, Malik HS, Phizicky EM. 2003. Identification of the yeast gene encoding the tRNA m1G methyltransferase responsible for modification at position 9. RNA 9: 574-585.
-
(2003)
RNA
, vol.9
, pp. 574-585
-
-
Jackman, J.E.1
Montange, R.K.2
Malik, H.S.3
Phizicky, E.M.4
-
29
-
-
0028936082
-
Mobilities of modified ribonucleotides on two-dimensional cellulose thin-layer chromatography
-
Keith G. 1995. Mobilities of modified ribonucleotides on two-dimensional cellulose thin-layer chromatography. Biochimie 77: 142-144.
-
(1995)
Biochimie
, vol.77
, pp. 142-144
-
-
Keith, G.1
-
30
-
-
28344451166
-
Optimizing splinted ligation of highly structured small RNAs
-
Kurschat WC, Muller J, Wombacher R, Helm M. 2005. Optimizing splinted ligation of highly structured small RNAs. RNA 11: 1909-1914.
-
(2005)
RNA
, vol.11
, pp. 1909-1914
-
-
Kurschat, W.C.1
Muller, J.2
Wombacher, R.3
Helm, M.4
-
31
-
-
67650340746
-
Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA
-
Liang B, Zhou J, Kahen E, Terns RM, Terns MP, Li H. 2009. Structure of a functional ribonucleoprotein pseudouridine synthase bound to a substrate RNA. Nat Struct Mol Biol 16: 740-746.
-
(2009)
Nat Struct Mol Biol
, vol.16
, pp. 740-746
-
-
Liang, B.1
Zhou, J.2
Kahen, E.3
Terns, R.M.4
Terns, M.P.5
Li, H.6
-
32
-
-
0033776960
-
Fluorescence resonance energy transfer as a structural tool for nucleic acids
-
Lilley DM, Wilson TJ. 2000. Fluorescence resonance energy transfer as a structural tool for nucleic acids. Curr Opin Chem Biol 4: 507-517.
-
(2000)
Curr Opin Chem Biol
, vol.4
, pp. 507-517
-
-
Lilley, D.M.1
Wilson, T.J.2
-
33
-
-
0033046012
-
Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA
-
Massenet S, Motorin Y, Lafontaine DL, Hurt EC, Grosjean H, Branlant C. 1999. Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA. Mol Cell Biol 19: 2142-2154.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 2142-2154
-
-
Massenet, S.1
Motorin, Y.2
Lafontaine, D.L.3
Hurt, E.C.4
Grosjean, H.5
Branlant, C.6
-
34
-
-
0031870753
-
The yeast tRNA:pseudouridine synthase Pus1p displays a multisite substrate specificity
-
Motorin Y, Keith G, Simon C, Foiret D, Simos G, Hurt E, Grosjean H. 1998. The yeast tRNA:pseudouridine synthase Pus1p displays a multisite substrate specificity. RNA 4: 856-869.
-
(1998)
RNA
, vol.4
, pp. 856-869
-
-
Motorin, Y.1
Keith, G.2
Simon, C.3
Foiret, D.4
Simos, G.5
Hurt, E.6
Grosjean, H.7
-
35
-
-
0242331664
-
Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit
-
Pan H, Agarwalla S, Moustakas DT, Finer-Moore J, Stroud RM. 2003. Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit. Proc Natl Acad Sci 100: 12648-12653.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 12648-12653
-
-
Pan, H.1
Agarwalla, S.2
Moustakas, D.T.3
Finer-Moore, J.4
Stroud, R.M.5
-
36
-
-
27744603243
-
Pseudouridine modification in Caenorhabditis elegans spliceosomal snRNAs: Unique modifications are found in regions involved in snRNA-snRNA interactions
-
doi: 10.1186/1471-2199-6-20
-
Patton JR, Padgett RW. 2005. Pseudouridine modification in Caenorhabditis elegans spliceosomal snRNAs: Unique modifications are found in regions involved in snRNA-snRNA interactions. BMC Mol Biol 6. doi: 10.1186/1471-2199-6-20.
-
(2005)
BMC Mol Biol
, vol.6
-
-
Patton, J.R.1
Padgett, R.W.2
-
37
-
-
21244449941
-
Mitochondrial myopathy and sideroblastic anemia (MLASA): Missense mutation in the pseudouridine synthase 1 (PUS1) gene is associated with the loss of tRNA pseudouridylation
-
Patton JR, Bykhovskaya Y, Mengesha E, Bertolotto C, Fischel-Ghodsian N. 2005. Mitochondrial myopathy and sideroblastic anemia (MLASA): Missense mutation in the pseudouridine synthase 1 (PUS1) gene is associated with the loss of tRNA pseudouridylation. J Biol Chem 280: 19823-19828.
-
(2005)
J Biol Chem
, vol.280
, pp. 19823-19828
-
-
Patton, J.R.1
Bykhovskaya, Y.2
Mengesha, E.3
Bertolotto, C.4
Fischel-Ghodsian, N.5
-
38
-
-
2542578632
-
Conformational change of pseudouridine 55 synthase upon its association with RNA substrate
-
Phannachet K, Huang RH. 2004. Conformational change of pseudouridine 55 synthase upon its association with RNA substrate. Nucleic Acids Res 32: 1422-1429.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1422-1429
-
-
Phannachet, K.1
Huang, R.H.2
-
39
-
-
50649087783
-
Partial activity is seen with many substitutions of highly conserved active site residues in human Pseudouridine synthase 1
-
Sibert BS, Fischel-Ghodsian N, Patton JR. 2008. Partial activity is seen with many substitutions of highly conserved active site residues in human Pseudouridine synthase 1. RNA 14: 1895-1906.
-
(2008)
RNA
, vol.14
, pp. 1895-1906
-
-
Sibert, B.S.1
Fischel-Ghodsian, N.2
Patton, J.R.3
-
40
-
-
1642580816
-
Not all pseudouridine synthases are potently inhibited by RNA containing 5-fluorouridine
-
Spedaliere CJ, Mueller EG. 2004. Not all pseudouridine synthases are potently inhibited by RNA containing 5-fluorouridine. RNA 10: 192-199.
-
(2004)
RNA
, vol.10
, pp. 192-199
-
-
Spedaliere, C.J.1
Mueller, E.G.2
-
43
-
-
2442643944
-
Detection and quantitation of RNA base modifications
-
Zhao X, Yu YT. 2004. Detection and quantitation of RNA base modifications. RNA 10: 996-1002.
-
(2004)
RNA
, vol.10
, pp. 996-1002
-
-
Zhao, X.1
Yu, Y.T.2
-
44
-
-
33846923097
-
Incorporation of 5-fluorouracil into U2 snRNA blocks pseudouridylation and pre-mRNA splicing in vivo
-
Zhao X, Yu YT. 2007. Incorporation of 5-fluorouracil into U2 snRNA blocks pseudouridylation and pre-mRNA splicing in vivo. Nucleic Acids Res 35: 550-558.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 550-558
-
-
Zhao, X.1
Yu, Y.T.2
-
45
-
-
33847234974
-
Pus3p- and Pus1p-dependent pseudouridylation of steroid receptor RNA activator controls a functional switch that regulates nuclear receptor signaling
-
Zhao X, Patton JR, Ghosh SK, Fischel-Ghodsian N, Shen L, Spanjaard RA. 2007. Pus3p- and Pus1p-dependent pseudouridylation of steroid receptor RNA activator controls a functional switch that regulates nuclear receptor signaling. Mol Endocrinol 21: 686-699.
-
(2007)
Mol Endocrinol
, vol.21
, pp. 686-699
-
-
Zhao, X.1
Patton, J.R.2
Ghosh, S.K.3
Fischel-Ghodsian, N.4
Shen, L.5
Spanjaard, R.A.6
|