-
1
-
-
0002561141
-
Historical perspectives on RNA nucleoside modifications
-
Grosjean,H. and Benne,R. (eds), ASM Press, Washington, DC
-
Lane,B.O. (1998) Historical perspectives on RNA nucleoside modifications. In Grosjean,H. and Benne,R. (eds), Modification and Editing of RNA. ASM Press, Washington, DC, pp. 1-20.
-
(1998)
Modification and Editing of RNA
, pp. 1-20
-
-
Lane, B.O.1
-
2
-
-
0000643212
-
Effects of pseudouridylation on tRNA hydration and dynamics: A theoretical approach
-
Grosjean,H. and Benne,R. (eds), ASM Press, Washington, DC
-
Auffinger,P. and Westhof,E. (1998) Effects of pseudouridylation on tRNA hydration and dynamics: a theoretical approach. In Grosjean,H. and Benne,R. (eds), Modification and Editing of RNA. ASM Press, Washington, DC, pp. 103-112.
-
(1998)
Modification and Editing of RNA
, pp. 103-112
-
-
Auffinger, P.1
Westhof, E.2
-
3
-
-
0028071999
-
Clustering of pseudouridine residues around the peptidyltransferase center of yeast cytoplasmic and mitochondrial ribosomes
-
Bakin,A., Lane,B.G. and Ofengand,J. (1994) Clustering of pseudouridine residues around the peptidyltransferase center of yeast cytoplasmic and mitochondrial ribosomes. Biochemistry, 33, 13475-13483.
-
(1994)
Biochemistry
, vol.33
, pp. 13475-13483
-
-
Bakin, A.1
Lane, B.G.2
Ofengand, J.3
-
4
-
-
0032189145
-
Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing
-
Yu,Y.T., Shu,M.D. and Steitz,J.A. (1998) Modifications of U2 snRNA are required for snRNP assembly and pre-mRNA splicing. EMBO J., 17, 5783-5795.
-
(1998)
EMBO J.
, vol.17
, pp. 5783-5795
-
-
Yu, Y.T.1
Shu, M.D.2
Steitz, J.A.3
-
5
-
-
0029945504
-
Pseudouridine synthases: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases
-
Koonin,E.V. (1996) Pseudouridine synthases: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases. Nucleic Acids Res., 24, 2411-2415.
-
(1996)
Nucleic Acids Res.
, vol.24
, pp. 2411-2415
-
-
Koonin, E.V.1
-
6
-
-
0033987499
-
The structural basis for tRNA recognition and pseudouridine formation by pseudouridine synthase I
-
Foster,P.G., Huang,L., Santi,D.V. and Stroud,R.M. (2000) The structural basis for tRNA recognition and pseudouridine formation by pseudouridine synthase I. Nat. Struct. Biol., 7, 23-27.
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 23-27
-
-
Foster, P.G.1
Huang, L.2
Santi, D.V.3
Stroud, R.M.4
-
7
-
-
0035966271
-
Cocrystal structure of a tRNA Psi55 pseudouridine synthase: Nucleotide flipping by an RNA-modifying enzyme
-
Hoang,C. and Ferre-D'Amare,A.R. (200 1) Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme. Cell, 107, 929-939.
-
(2001)
Cell
, vol.107
, pp. 929-939
-
-
Hoang, C.1
Ferre-D'Amare, A.R.2
-
8
-
-
0036242421
-
Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP
-
Sivaraman,J., Sauve,V., Larocque,R., Stura,E.A., Schrag,J.D., Cygler,M. and Matte,A. (2002) Structure of the 16S rRNA pseudouridine synthase RsuA bound to uracil and UMP. Nat. Struct. Biol., 9, 353-358.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 353-358
-
-
Sivaraman, J.1
Sauve, V.2
Larocque, R.3
Stura, E.A.4
Schrag, J.D.5
Cygler, M.6
Matte, A.7
-
9
-
-
0344687349
-
Crystal structure of the RluD pseudouridine synthase catalytic module, an enzyme that modifies 23S rRNA and is essential for normal cell growth of Escherichia coli
-
Sivaraman,J., Iannuzzi,P., Cygler,M. and Matte,A. (2003) Crystal structure of the RluD pseudouridine synthase catalytic module, an enzyme that modifies 23S rRNA and is essential for normal cell growth of Escherichia coli. J. Mol. Biol., 335, 87-101.
-
(2003)
J. Mol. Biol.
, vol.335
, pp. 87-101
-
-
Sivaraman, J.1
Iannuzzi, P.2
Cygler, M.3
Matte, A.4
-
10
-
-
0038475918
-
A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea and eukarya
-
Kaya,Y. and Ofengand,J. (2003) A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea and eukarya. RNA, 9, 711-721.
-
(2003)
RNA
, vol.9
, pp. 711-721
-
-
Kaya, Y.1
Ofengand, J.2
-
11
-
-
0032488657
-
A conserved aspartate of tRNA pseudouridine synthase is essential for activity and a probable nucleophilic catalyst
-
Huang,L., Pookanjanatavip,M., Gu,X. and Santi,D.V. (1998) A conserved aspartate of tRNA pseudouridine synthase is essential for activity and a probable nucleophilic catalyst. Biochemistry, 37, 344-351.
-
(1998)
Biochemistry
, vol.37
, pp. 344-351
-
-
Huang, L.1
Pookanjanatavip, M.2
Gu, X.3
Santi, D.V.4
-
12
-
-
0033529594
-
Critical aspartic acid residues in pseudouridine synthases
-
Ramamurthy,V., Swann,S.L., Paulson,J.L., Spedaliere,C.J. and Mueller,E.G. (1999) Critical aspartic acid residues in pseudouridine synthases. J. Biol. Chem., 274, 22225-22230.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 22225-22230
-
-
Ramamurthy, V.1
Swann, S.L.2
Paulson, J.L.3
Spedaliere, C.J.4
Mueller, E.G.5
-
13
-
-
0033053644
-
16S ribosomal RNA pseudouridine synthase RsuA of Escherichia coli: Deletion, mutation of the conserved Asp102 residue and sequence comparison among all other pseudouridine synthases
-
Conrad,J., Niu,L., Rudd,K., Lane,B.G. and Ofengand,J. (1999) 16S ribosomal RNA pseudouridine synthase RsuA of Escherichia coli: deletion, mutation of the conserved Asp102 residue and sequence comparison among all other pseudouridine synthases. RNA, 5, 751-763.
-
(1999)
RNA
, vol.5
, pp. 751-763
-
-
Conrad, J.1
Niu, L.2
Rudd, K.3
Lane, B.G.4
Ofengand, J.5
-
14
-
-
0033516555
-
Functional effect of deletion and mutation of the Escherichia coli ribosomal RNA and tRNA pseudouridine synthase RluA
-
Raychaudhuri,S., Niu,L., Conrad,J., Lane,B.G. and Ofengand,J. (1999) Functional effect of deletion and mutation of the Escherichia coli ribosomal RNA and tRNA pseudouridine synthase RluA. J. Biol. Chem., 274, 18880-18886.
-
(1999)
J. Biol. Chem.
, vol.274
, pp. 18880-18886
-
-
Raychaudhuri, S.1
Niu, L.2
Conrad, J.3
Lane, B.G.4
Ofengand, J.5
-
15
-
-
0033435203
-
The mechanism of pseudouridine synthase I as deduced from its interaction with 5-fluorouracil-tRNA
-
Gu,X., Liu,Y. and Santi,D.V. (1999) The mechanism of pseudouridine synthase I as deduced from its interaction with 5-fluorouracil-tRNA. Proc. Natl Acad. Sci. USA, 96, 14270-14275.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 14270-14275
-
-
Gu, X.1
Liu, Y.2
Santi, D.V.3
-
16
-
-
0036242429
-
Chips off the old block
-
Mueller,E.G. (2002) Chips off the old block. Nat. Struct. Biol., 9, 320-322.
-
(2002)
Nat. Struct. Biol.
, vol.9
, pp. 320-322
-
-
Mueller, E.G.1
-
17
-
-
0242331664
-
Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit
-
Pan,H., Agarwalla,S., Moustakas,D.T., Finer-Moore,J. and Stroud,R.M. (2003) Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit. Proc. Natl Acad. Sci. USA, 100, 12648-12653.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 12648-12653
-
-
Pan, H.1
Agarwalla, S.2
Moustakas, D.T.3
Finer-Moore, J.4
Stroud, R.M.5
-
18
-
-
0027308675
-
Overproduction of proteins using the expression-cassette polymerase chain reaction
-
MacFerrin,K.D., Chen,L., Terranova,M.P., Schreiber,S.L. and Verdine,G.L. (1993) Overproduction of proteins using the expression-cassette polymerase chain reaction. Methods Enzymol., 217, 79-102.
-
(1993)
Methods Enzymol.
, vol.217
, pp. 79-102
-
-
MacFerrin, K.D.1
Chen, L.2
Terranova, M.P.3
Schreiber, S.L.4
Verdine, G.L.5
-
19
-
-
0031059866
-
Processing of X-ray diffraction data collected in oscillation mode
-
Academic Press, San Diego, CA
-
Otwinowski,Z. and Minor,W. (1997) Processing of X-ray diffraction data collected in oscillation mode. Methods in Enzymology. Academic Press, San Diego, CA, Vol. 277, pp. 307-326.
-
(1997)
Methods in Enzymology
, vol.277
, pp. 307-326
-
-
Otwinowski, Z.1
Minor, W.2
-
22
-
-
84889120137
-
Improved methods for building protein models in electron density maps and the location of errors in these models
-
Jones,T.A., Zou,J.-Y., Cowan,S.W. and Kjeldgaard,M. (1991) Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr., A47, 110-119.
-
(1991)
Acta Crystallogr.
, vol.A47
, pp. 110-119
-
-
Jones, T.A.1
Zou, J.-Y.2
Cowan, S.W.3
Kjeldgaard, M.4
-
23
-
-
3543012707
-
Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination
-
Brünger,A.T., Adams,P.D., Clore,G.M., DeLano,W.L., Gros,P., Grosse-Kunstleve,R.W., Jiang,J.-S., Kuszewski,J., Nilges,M., Pannu,N.S. et al. (1998) Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination. Acta Crystallogr, D54, 905-921.
-
(1998)
Acta Crystallogr.
, vol.D54
, pp. 905-921
-
-
Brünger, A.T.1
Adams, P.D.2
Clore, G.M.3
DeLano, W.L.4
Gros, P.5
Grosse-Kunstleve, R.W.6
Jiang, J.-S.7
Kuszewski, J.8
Nilges, M.9
Pannu, N.S.10
-
24
-
-
84920325457
-
AMoRe: An automated package for molecular replacement
-
Navaza,J. (1994) AMoRe: an automated package for molecular replacement. Acta Crystallogr., A50, 157-163.
-
(1994)
Acta Crystallogr.
, vol.A50
, pp. 157-163
-
-
Navaza, J.1
-
25
-
-
0032488604
-
Molecular recognition of tRNA by tRNA pseudouridine 55 synthase
-
Gu,X, Yu,M., Ivanetich,K.M. and Santi,D.V. (1998) Molecular recognition of tRNA by tRNA pseudouridine 55 synthase. Biochemistry, 37, 339-343.
-
(1998)
Biochemistry
, vol.37
, pp. 339-343
-
-
Gu, X.1
Yu, M.2
Ivanetich, K.M.3
Santi, D.V.4
-
26
-
-
0031565927
-
Major identity determinants for enzymatic formation of ribothymidine and pseudouridine in the T psi-loop of yeast tRNAs
-
Becker,H.F., Motorin,Y., Sissler,M., Florentz,C. and Grosjean,H. (1997) Major identity determinants for enzymatic formation of ribothymidine and pseudouridine in the T psi-loop of yeast tRNAs. J. Mol. Biol., 274, 505-518.
-
(1997)
J. Mol. Biol.
, vol.274
, pp. 505-518
-
-
Becker, H.F.1
Motorin, Y.2
Sissler, M.3
Florentz, C.4
Grosjean, H.5
-
27
-
-
0029991713
-
Crystal structure of tRNA-guanine transglycosylase: RNA modification by base exchange
-
Romier,C., Reuter,K., Suck,D. and Ficner,R. (1996) Crystal structure of tRNA-guanine transglycosylase: RNA modification by base exchange. EMBO J., 15, 2850-2857.
-
(1996)
EMBO J.
, vol.15
, pp. 2850-2857
-
-
Romier, C.1
Reuter, K.2
Suck, D.3
Ficner, R.4
-
28
-
-
0141596159
-
Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate
-
Xie,W., Liu,X. and Huang,R.H. (2003) Chemical trapping and crystal structure of a catalytic tRNA guanine transglycosylase covalent intermediate. Nat. Struct. Biol., 10, 781-788.
-
(2003)
Nat. Struct. Biol.
, vol.10
, pp. 781-788
-
-
Xie, W.1
Liu, X.2
Huang, R.H.3
-
29
-
-
0000449348
-
Ribbon models of macromolecules
-
Carson,M. (1987) Ribbon models of macromolecules. J. Mol. Graph., 5, 103-106.
-
(1987)
J. Mol. Graph.
, vol.5
, pp. 103-106
-
-
Carson, M.1
|