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Volumn 14, Issue 12, 2008, Pages 2521-2527

Archaeal Pus10 proteins can produce both pseudouridine 54 and 55 in tRNA

Author keywords

Pseudouridine synthase; Pus4; TrmA; Trub

Indexed keywords

ARCHAEAL PROTEIN; CORE PROTEIN; DYSKERIN; PSEUDOURIDINE; PSEUDOURIDINE 10 PROTEIN; PSEUDOURIDINE 54 PROTEIN; PSEUDOURIDINE 55 PROTEIN; RIBONUCLEOPROTEIN; SODIUM CHLORIDE; TRANSFER RNA; UNCLASSIFIED DRUG;

EID: 57049151350     PISSN: 13558382     EISSN: 14699001     Source Type: Journal    
DOI: 10.1261/rna.1276508     Document Type: Article
Times cited : (39)

References (42)
  • 1
    • 0141750434 scopus 로고    scopus 로고
    • Identification of modulators of TRAIL-induced apoptosis via RNAi-based phenotypic screening
    • Aza-Blanc, P., Cooper, C.L., Wagner, K., Batalov, S., Deveraux, Q.L., and Cooke, M.P. 2003. Identification of modulators of TRAIL-induced apoptosis via RNAi-based phenotypic screening. Mol. Cell 12: 627-637.
    • (2003) Mol. Cell , vol.12 , pp. 627-637
    • Aza-Blanc, P.1    Cooper, C.L.2    Wagner, K.3    Batalov, S.4    Deveraux, Q.L.5    Cooke, M.P.6
  • 2
    • 0030772852 scopus 로고    scopus 로고
    • The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of Ψ55 in both mitochondrial and cytoplasmic tRNAs
    • Becker, H.F., Motorin, Y., Planta, R.J., and Grosjean, H. 1997a. The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of Ψ55 in both mitochondrial and cytoplasmic tRNAs. Nucleic Acids Res. 25: 4493-4499.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4493-4499
    • Becker, H.F.1    Motorin, Y.2    Planta, R.J.3    Grosjean, H.4
  • 3
    • 0031565927 scopus 로고    scopus 로고
    • Major identity determinants for enzymatic formation of ribothymidine and pseudouridine in the T Ψ-loop of yeast tRNAs
    • Becker, H.F., Motorin, Y., Sissler, M., Florentz, C., and Grosjean, H. 1997b. Major identity determinants for enzymatic formation of ribothymidine and pseudouridine in the T Ψ-loop of yeast tRNAs. J. Mol. Biol. 274: 505-518.
    • (1997) J. Mol. Biol , vol.274 , pp. 505-518
    • Becker, H.F.1    Motorin, Y.2    Sissler, M.3    Florentz, C.4    Grosjean, H.5
  • 4
    • 33746504845 scopus 로고    scopus 로고
    • A previously unidentified activity of yeast and mouse RNA:pseudouridine synthases 1 (Pus1p) on tRNAs
    • Behm-Ansmant, I., Massenet, S., Immel, F., Patton, J.R., Motorin, Y., and Branlant, C. 2006. A previously unidentified activity of yeast and mouse RNA:pseudouridine synthases 1 (Pus1p) on tRNAs. RNA 12: 1583-1593.
    • (2006) RNA , vol.12 , pp. 1583-1593
    • Behm-Ansmant, I.1    Massenet, S.2    Immel, F.3    Patton, J.R.4    Motorin, Y.5    Branlant, C.6
  • 5
    • 2642517964 scopus 로고    scopus 로고
    • Crystal structure of the apo forms of Ψ 55 tRNA pseudouridine synthase from Mycobacterium tuberculosis: A hinge at the base of the catalytic cleft
    • Chaudhuri, B.N., Chan, S., Perry, L.J., and Yeates, T.O. 2004. Crystal structure of the apo forms of Ψ 55 tRNA pseudouridine synthase from Mycobacterium tuberculosis: A hinge at the base of the catalytic cleft. J. Biol. Chem. 279: 24585-24591.
    • (2004) J. Biol. Chem , vol.279 , pp. 24585-24591
    • Chaudhuri, B.N.1    Chan, S.2    Perry, L.J.3    Yeates, T.O.4
  • 6
    • 0033105160 scopus 로고    scopus 로고
    • Transfer RNA modification enzymes from Pyrococcus furiosus: Detection of the enzymatic activities in vitro
    • Constantinesco, F., Motorin, Y., and Grosjean, H. 1999. Transfer RNA modification enzymes from Pyrococcus furiosus: Detection of the enzymatic activities in vitro. Nucleic Acids Res. 27: 1308-1315.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1308-1315
    • Constantinesco, F.1    Motorin, Y.2    Grosjean, H.3
  • 7
    • 0037428520 scopus 로고    scopus 로고
    • RNA-guided nucleotide modification of ribosomal and other RNAs
    • Decatur, W.A. and Fournier, M.J. 2003. RNA-guided nucleotide modification of ribosomal and other RNAs. J. Biol. Chem. 278: 695-698.
    • (2003) J. Biol. Chem , vol.278 , pp. 695-698
    • Decatur, W.A.1    Fournier, M.J.2
  • 8
    • 0018901584 scopus 로고
    • Methylenetetrahydrofolate-dependent biosynthesis of ribothymidine in transfer RNA of Streptococcus faecalis. Evidence for reduction of the 1-carbon unit by FADH2
    • Delk, A.S., Nagle Jr., D.P., and Rabinowitz, J.C. 1980. Methylenetetrahydrofolate-dependent biosynthesis of ribothymidine in transfer RNA of Streptococcus faecalis. Evidence for reduction of the 1-carbon unit by FADH2. J. Biol. Chem. 255: 4387-4390.
    • (1980) J. Biol. Chem , vol.255 , pp. 4387-4390
    • Delk, A.S.1    Nagle Jr., D.P.2    Rabinowitz, J.C.3
  • 9
    • 27844495652 scopus 로고    scopus 로고
    • Small noncoding RNAs in Archaea
    • Dennis, P.P. and Omer, A. 2005. Small noncoding RNAs in Archaea. Curr. Opin. Microbiol. 8: 685-694.
    • (2005) Curr. Opin. Microbiol , vol.8 , pp. 685-694
    • Dennis, P.P.1    Omer, A.2
  • 11
    • 0036591884 scopus 로고    scopus 로고
    • Biogenesis of small nucleolar ribonucleoproteins
    • Filipowicz, W. and Pogacic, V. 2002. Biogenesis of small nucleolar ribonucleoproteins. Curr. Opin. Cell Biol. 14: 319-327.
    • (2002) Curr. Opin. Cell Biol , vol.14 , pp. 319-327
    • Filipowicz, W.1    Pogacic, V.2
  • 12
    • 0019226833 scopus 로고
    • Isolation and chracterization of m5U-methyltransferase from Escherichia coli
    • Greenberg, R. and Dudock, B. 1980. Isolation and chracterization of m5U-methyltransferase from Escherichia coli. J. Biol. Chem. 255: 8296-8302.
    • (1980) J. Biol. Chem , vol.255 , pp. 8296-8302
    • Greenberg, R.1    Dudock, B.2
  • 13
    • 0029966338 scopus 로고    scopus 로고
    • Enzymatic formation of modified nucleosides in tRNA: Dependence on tRNA architecture
    • Grosjean, H., Edqvist, J., Straby, K.B., and Giege, R. 1996. Enzymatic formation of modified nucleosides in tRNA: Dependence on tRNA architecture. J. Mol. Biol. 255: 67-85.
    • (1996) J. Mol. Biol , vol.255 , pp. 67-85
    • Grosjean, H.1    Edqvist, J.2    Straby, K.B.3    Giege, R.4
  • 14
    • 55749111501 scopus 로고    scopus 로고
    • Modified nucleosides in archaeal RNAs
    • ed. P. Blum, pp, Caister Academic Press, Norfolk, UK
    • Grosjean, H., Gupta, R., and Maxwell, E.S. 2008. Modified nucleosides in archaeal RNAs. In Archaea: New models for prokaryotic biology (ed. P. Blum), pp. 171-196. Caister Academic Press, Norfolk, UK.
    • (2008) Archaea: New models for prokaryotic biology , pp. 171-196
    • Grosjean, H.1    Gupta, R.2    Maxwell, E.S.3
  • 15
    • 0032488604 scopus 로고    scopus 로고
    • Molecular recognition of tRNA by tRNA pseudouridine 55 synthase
    • Gu, X., Yu, M., Ivanetich, K.M., and Santi, D.V. 1998. Molecular recognition of tRNA by tRNA pseudouridine 55 synthase. Biochemistry 37: 339-343.
    • (1998) Biochemistry , vol.37 , pp. 339-343
    • Gu, X.1    Yu, M.2    Ivanetich, K.M.3    Santi, D.V.4
  • 16
    • 0021153752 scopus 로고
    • Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs
    • Gupta, R. 1984. Halobacterium volcanii tRNAs. Identification of 41 tRNAs covering all amino acids, and the sequences of 33 class I tRNAs. J. Biol. Chem. 259: 9461-9471.
    • (1984) J. Biol. Chem , vol.259 , pp. 9461-9471
    • Gupta, R.1
  • 17
    • 0022529031 scopus 로고
    • Transfer RNAs of Halobacterium volcanii: Sequences of five leucine and three serine tRNAs
    • Gupta, R. 1986. Transfer RNAs of Halobacterium volcanii: Sequences of five leucine and three serine tRNAs. Syst. Appl. Microbiol. 7: 102-105.
    • (1986) Syst. Appl. Microbiol , vol.7 , pp. 102-105
    • Gupta, R.1
  • 18
    • 36248957607 scopus 로고    scopus 로고
    • Differential roles of archaeal box H/ACA proteins in guide RNA-dependent and independent pseudouridine formation
    • Gurha, P., Joardar, A., Chaurasia, P., and Gupta, R. 2007. Differential roles of archaeal box H/ACA proteins in guide RNA-dependent and independent pseudouridine formation. RNA Biol. 4: 101-109.
    • (2007) RNA Biol , vol.4 , pp. 101-109
    • Gurha, P.1    Joardar, A.2    Chaurasia, P.3    Gupta, R.4
  • 19
  • 20
    • 2942610793 scopus 로고    scopus 로고
    • RNA structure and function in C/D and H/ACA s(no)RNPs
    • Henras, A.K., Dez, C., and Henry, Y. 2004. RNA structure and function in C/D and H/ACA s(no)RNPs. Curr. Opin. Struct. Biol. 14: 335-343.
    • (2004) Curr. Opin. Struct. Biol , vol.14 , pp. 335-343
    • Henras, A.K.1    Dez, C.2    Henry, Y.3
  • 21
    • 0037133942 scopus 로고    scopus 로고
    • Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions
    • Kiss, T. 2002. Small nucleolar RNAs: An abundant group of noncoding RNAs with diverse cellular functions. Cell 109: 145-148.
    • (2002) Cell , vol.109 , pp. 145-148
    • Kiss, T.1
  • 22
    • 0028272470 scopus 로고
    • The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles
    • Kowalak, J.A., Dalluge, J.J., McCloskey, J.A., and Stetter, K.O. 1994. The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles. Biochemistry 33: 7869-7876.
    • (1994) Biochemistry , vol.33 , pp. 7869-7876
    • Kowalak, J.A.1    Dalluge, J.J.2    McCloskey, J.A.3    Stetter, K.O.4
  • 23
    • 35148886286 scopus 로고    scopus 로고
    • Crystal structure of human Pus10, a novel pseudouridine synthase
    • McCleverty, C.J., Hornsby, M., Spraggon, G., and Kreusch, A. 2007. Crystal structure of human Pus10, a novel pseudouridine synthase. J. Mol. Biol. 373: 1243-1254.
    • (2007) J. Mol. Biol , vol.373 , pp. 1243-1254
    • McCleverty, C.J.1    Hornsby, M.2    Spraggon, G.3    Kreusch, A.4
  • 24
    • 19444374397 scopus 로고    scopus 로고
    • The many facets of H/ACA ribonucleoproteins
    • Meier, U.T. 2005. The many facets of H/ACA ribonucleoproteins. Chromosoma 114: 1-14.
    • (2005) Chromosoma , vol.114 , pp. 1-14
    • Meier, U.T.1
  • 25
    • 0031870753 scopus 로고    scopus 로고
    • The yeast tRNA:pseudouridine synthase Pus1p displays a multisite substrate specificity
    • Motorin, Y., Keith, G., Simon, C., Foiret, D., Simos, G., Hurt, E., and Grosjean, H. 1998. The yeast tRNA:pseudouridine synthase Pus1p displays a multisite substrate specificity. RNA 4: 856-869.
    • (1998) RNA , vol.4 , pp. 856-869
    • Motorin, Y.1    Keith, G.2    Simon, C.3    Foiret, D.4    Simos, G.5    Hurt, E.6    Grosjean, H.7
  • 26
    • 34548726200 scopus 로고    scopus 로고
    • Identification of modified residues in RNAs by reverse transcription-based methods
    • Motorin, Y., Muller, S., Behm-Ansmant, I., and Branlant, C. 2007. Identification of modified residues in RNAs by reverse transcription-based methods. Methods Enzymol. 425: 21-53.
    • (2007) Methods Enzymol , vol.425 , pp. 21-53
    • Motorin, Y.1    Muller, S.2    Behm-Ansmant, I.3    Branlant, C.4
  • 27
    • 34548707914 scopus 로고    scopus 로고
    • Identification of determinants in the protein partners aCBF5 and aNOP10 necessary for the tRNA:Ψ55-synthase and RNA-guided RNA:Ψ-synthase activities
    • Muller, S., Fourmann, J.B., Loegler, C., Charpentier, B., and Branlant, C. 2007. Identification of determinants in the protein partners aCBF5 and aNOP10 necessary for the tRNA:Ψ55-synthase and RNA-guided RNA:Ψ-synthase activities. Nucleic Acids Res. 35: 5610-5624.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5610-5624
    • Muller, S.1    Fourmann, J.B.2    Loegler, C.3    Charpentier, B.4    Branlant, C.5
  • 28
    • 43349108346 scopus 로고    scopus 로고
    • Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs
    • Muller, S., Leclerc, F., Behm-Ansmant, I., Fourmann, J.B., Charpentier, B., and Branlant, C. 2008. Combined in silico and experimental identification of the Pyrococcus abyssi H/ACA sRNAs and their target sites in ribosomal RNAs. Nucleic Acids Res. 36: 2459-2475.
    • (2008) Nucleic Acids Res , vol.36 , pp. 2459-2475
    • Muller, S.1    Leclerc, F.2    Behm-Ansmant, I.3    Fourmann, J.B.4    Charpentier, B.5    Branlant, C.6
  • 29
    • 0019880102 scopus 로고
    • RNA processing in microinjected Xenopus oocytes. Sequential addition of base modifications in the spliced transfer RNA
    • Nishikura, K. and De Robertis, E.M. 1981. RNA processing in microinjected Xenopus oocytes. Sequential addition of base modifications in the spliced transfer RNA. J. Mol. Biol. 145: 405-420.
    • (1981) J. Mol. Biol , vol.145 , pp. 405-420
    • Nishikura, K.1    De Robertis, E.M.2
  • 31
    • 0029258983 scopus 로고
    • Purification, cloning, and properties of the tRNA Ψ 55 synthase from Escherichia coli
    • Nurse, K., Wrzesinski, J., Bakin, A., Lane, B.G., and Ofengand, J. 1995. Purification, cloning, and properties of the tRNA Ψ 55 synthase from Escherichia coli. RNA 1: 102-112.
    • (1995) RNA , vol.1 , pp. 102-112
    • Nurse, K.1    Wrzesinski, J.2    Bakin, A.3    Lane, B.G.4    Ofengand, J.5
  • 32
    • 0018974885 scopus 로고
    • Cloning and restriction mapping of the trmA gene coding for transfer ribonucleic acid (5-methyluridine)-methyltransferase in Escherichia coli K-12
    • Ny, T. and Bjork, G.R. 1980. Cloning and restriction mapping of the trmA gene coding for transfer ribonucleic acid (5-methyluridine)-methyltransferase in Escherichia coli K-12. J. Bacteriol. 142: 371-379.
    • (1980) J. Bacteriol , vol.142 , pp. 371-379
    • Ny, T.1    Bjork, G.R.2
  • 33
    • 0242331664 scopus 로고    scopus 로고
    • Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit
    • Pan, H., Agarwalla, S., Moustakas, D.T., Finer-Moore, J., and Stroud, R.M. 2003. Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit. Proc. Natl. Acad. Sci. 100: 12648-12653.
    • (2003) Proc. Natl. Acad. Sci , vol.100 , pp. 12648-12653
    • Pan, H.1    Agarwalla, S.2    Moustakas, D.T.3    Finer-Moore, J.4    Stroud, R.M.5
  • 34
    • 2542578632 scopus 로고    scopus 로고
    • Conformational change of pseudouridine 55 synthase upon its association with RNA substrate
    • Phannachet, K. and Huang, R.H. 2004. Conformational change of pseudouridine 55 synthase upon its association with RNA substrate. Nucleic Acids Res. 32: 1422-1429.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1422-1429
    • Phannachet, K.1    Huang, R.H.2
  • 35
    • 34247130376 scopus 로고    scopus 로고
    • The structure and function of small nucleolar ribonucleoproteins
    • Reichow, S.L., Hamma, T., Ferré-D'Amaré, A.R., and Varani, G. 2007. The structure and function of small nucleolar ribonucleoproteins. Nucleic Acids Res. 35: 1452-1464.
    • (2007) Nucleic Acids Res , vol.35 , pp. 1452-1464
    • Reichow, S.L.1    Hamma, T.2    Ferré-D'Amaré, A.R.3    Varani, G.4
  • 38
    • 13444288185 scopus 로고    scopus 로고
    • Compilation of tRNA sequences and sequences of tRNA genes
    • Sprinzl, M. and Vassilenko, K.S. 2005. Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Res. 33: D139-D140.
    • (2005) Nucleic Acids Res , vol.33
    • Sprinzl, M.1    Vassilenko, K.S.2
  • 39
    • 22844445708 scopus 로고    scopus 로고
    • Identification of a novel gene encoding a flavin-dependent tRNA:m5U methyltransferase in bacteria-evolutionary implications
    • Urbonavicius, J., Skouloubris, S., Myllykallio, H., and Grosjean, H. 2005. Identification of a novel gene encoding a flavin-dependent tRNA:m5U methyltransferase in bacteria-evolutionary implications. Nucleic Acids Res. 33: 3955-3964.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3955-3964
    • Urbonavicius, J.1    Skouloubris, S.2    Myllykallio, H.3    Grosjean, H.4
  • 41
    • 0034659940 scopus 로고    scopus 로고
    • Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: Cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria
    • Watanabe, Y. and Gray, M.W. 2000. Evolutionary appearance of genes encoding proteins associated with box H/ACA snoRNAs: cbf5p in Euglena gracilis, an early diverging eukaryote, and candidate Gar1p and Nop10p homologs in archaebacteria. Nucleic Acids Res. 28: 2342-2352.
    • (2000) Nucleic Acids Res , vol.28 , pp. 2342-2352
    • Watanabe, Y.1    Gray, M.W.2
  • 42


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