Substrate recognition by RNA 5-methyluridine methyltransferases and pseudouridine synthases: A structural perspective

Journal of Biological Chemistry

Volumn 281, Issue 51, 2006, Pages 38969-38973

  Hur, Sun ^a   Stroud, Robert M ^a   Finer Moore, Janet ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

5 METHYLURIDINE METHYLTRANSFERASE DERIVATIVE; DNA; FLUOROURIDINE; METHYLTRANSFERASE; PSEUDOURIDINE SYNTHASE; RIBOSOME RNA; SYNTHETASE; TRANSFER RNA; UNCLASSIFIED DRUG;

ENZYME STRUCTURE; ENZYME SUBSTRATE; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; RIBOSOME; RNA BINDING; RNA STRUCTURE; RNA SYNTHESIS; SHORT SURVEY; STRUCTURE ANALYSIS;

BINDING SITES; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; HYDRO-LYASES; INTRAMOLECULAR TRANSFERASES; MODELS, MOLECULAR; NUCLEIC ACID CONFORMATION; PROTEIN CONFORMATION; RNA; RNA, TRANSFER; SUBSTRATE SPECIFICITY; TRNA METHYLTRANSFERASES;

EID: 33845984589     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.R600034200     Document Type: Short Survey

References (29)

1. Kealey, J. T., Gu, X., and Santi, D. V. (1994) Biochimie (Paris) 76, 1133-1142
2. Gu, X., Ivanetich, K. M., and Santi, D. V. (1996) Biochemistry 35, 11652-11659
3. Lee, T. T., Agarwalla, S., and Stroud, R. M. (2004) Structure 12, 397-407
4. Lee, T. T., Agarwalla, S., and Stroud, R. M. (2005) Cell 120, 599-611
5. Agarwalla, S., Kealey, J. T., Santi, D. V., and Stroud, R. M. (2002) J. Biol. Chem. 277, 8835-8840
6. Samuelsson, T., and Olsson, T. (1990) J. Biol. Chem. 265, 8782-8787
7. Patton, J. R. (1993) Biochem. J. 290, 595-600
8. Gustafsson, C., Reid, R., Greene, P. J., and Santi, D. V. (1996) Nucleic Acids Res. 24, 3756-3762
9. Kaya, Y., and Ofengand, J. (2003) RNA (N. Y.) 9, 711-721
10. Koonin, E. V. (1996) Nucleic Acids Res. 24, 2411-2415
11. Foster, P. G., Huang, L., Santi, D. V., and Stroud, R. M. (2000) Nat. Struct. Biol. 7, 23-27
12. Aravind, L., and Koonin, E. V. (1999) J. Mol. Evol. 48, 291-302
13. Watanabe, Y., and Gray, M. W. (2000) Nucleic Acids Res. 28, 2342-2352
14. Gu, X., Yu, M., Ivanetich, K. M., and Santi, D. V. (1998) Biochemistry 37, 339-343
15. Hoang, C., and Ferre-D'Amare, A. R. (2001) Cell 107, 929-939
16. Pan, H., Agarwalla, S., Moustakas, D. T., Finer-Moore, J., and Stroud, R. M. (2003) Proc. Natl. Acad. Sci. U. S. A. 100, 12648-12653
17. Phannachet, K., and Huang, R. H. (2004) Nucleic Acids Res. 32, 1422-1429
18. Ishitani, R., Nureki, O., Nameki, N., Okada, N., Nishimura, S., and Yokoyama, S. (2003) Cell 113, 383-394
19. Becker, H. F., Motorin, Y., Planta, R. J., and Grosjean, H. (1997) Nucleic Acids Res. 25, 4493-4499
20. Ericsson, U. B., Nordlund, P., and Hallberg, B. M. (2004) FEBS Lett. 565, 59-64
21. Hoang, C., and Ferre-D'Amare, A. R. (2004) RNA (N. Y.) 10, 1026-1033
22. Kaya, Y., Del Campo, M., Ofengand, J., and Malhotra, A. (2004) J. Biol. Chem. 279, 18107-18110
23. Sivaraman, J., Sauve, V., Larocque, R., Stura, E. A., Schrag, J. D., Cygler, M., and Matte, A. (2002) Nat. Struct. Biol. 9, 353-358
24. Ofengand, J. (2002) FEBS Lett. 514, 17-25
25. Meier, U. T. (2005) Chromosoma (Berl.) 114, 1-14
26. Hamma, T., Reichow, S. L., Varani, G., and Ferre-D'Amare, A. R. (2005) Nat. Struct. Mol. Biol. 12, 1101-1107
27. Li, L., and Ye, K. (2006) Nature 443, 302-307
28. Rashid, R., Liang, B., Baker, D. L., Youssef, O. A., He, Y., Phipps, K., Terns, R. M., Terns, M. P., and Li, H. (2006) Mol. Cell 21, 249-260
29. Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., and Ferrin, T. E. (2004) J. Comput. Chem. 25, 1605-1612