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Volumn 219, Issue 9-10, 2009, Pages 455-468

Conserved intron positions in FGFR genes reflect the modular structure of FGFR and reveal stepwise addition of domains to an already complex ancestral FGFR

Author keywords

Cnidaria; Deuterostomia; FGFR; Intron; Placozoa; Protostomia

Indexed keywords

FIBROBLAST GROWTH FACTOR RECEPTOR; IMMUNOGLOBULIN G3;

EID: 76449089337     PISSN: 0949944X     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00427-009-0309-5     Document Type: Article
Times cited : (24)

References (64)
  • 1
    • 41949089241 scopus 로고    scopus 로고
    • Sites of Fgf signalling and perception during embryogenesis of the beetle Tribolium castaneum
    • A Beermann R Schröder 2008 Sites of Fgf signalling and perception during embryogenesis of the beetle Tribolium castaneum Dev Genes Evol 218 153 167
    • (2008) Dev Genes Evol , vol.218 , pp. 153-167
    • Beermann, A.1    Schröder, R.2
  • 2
    • 52049092954 scopus 로고    scopus 로고
    • Testing the new animal phylogeny: A phylum level molecular analysis of the animal kingdom
    • SJ Bourlat C Nielsen AD Economou MJ Telford 2008 Testing the new animal phylogeny: a phylum level molecular analysis of the animal kingdom Mol Phylogenet Evol 49 23 31
    • (2008) Mol Phylogenet Evol , vol.49 , pp. 23-31
    • Bourlat, S.J.1    Nielsen, C.2    Economou, A.D.3    Telford, M.J.4
  • 3
    • 0029023417 scopus 로고
    • Class-level relationship in the phylum Cnidaria: Molecular and morphological evidence
    • D Bridge CW Cunningham R DeSalle LW Buss 1995 Class-level relationship in the phylum Cnidaria: molecular and morphological evidence Mol Biol Evol 12 679 9
    • (1995) Mol Biol Evol , vol.12 , pp. 679-679
    • Bridge, D.1    Cunningham, C.W.2    Desalle, R.3    Buss, L.W.4
  • 4
    • 0031024921 scopus 로고    scopus 로고
    • Of worms and men: An evolutionary perspective on the fibroblast growth factor (FGF) and FGF receptor families
    • F Coulier P Pontarotti R Roubin H Hartung M Goldfarb D Birnbaum 1997 Of worms and men: an evolutionary perspective on the fibroblast growth factor (FGF) and FGF receptor families J Mol Evol 44 43 56
    • (1997) J Mol Evol , vol.44 , pp. 43-56
    • Coulier, F.1    Pontarotti, P.2    Roubin, R.3    Hartung, H.4    Goldfarb, M.5    Birnbaum, D.6
  • 7
    • 46449117934 scopus 로고    scopus 로고
    • CDNA sequences for transcription factors and signaling proteins of the hemichordate Saccoglossus kowalevskii: Efficacy of the expressed sequence tag (EST) approach for evolutionary and developmental studies of a new organism
    • RM Freeman Jr M Wu MM Cordonnier-Pratt LH Pratt CE Gruber M Smith ES Lander N Stange-Thomann CJ Lowe J Gerhart M Kirschner 2008 cDNA sequences for transcription factors and signaling proteins of the hemichordate Saccoglossus kowalevskii: efficacy of the expressed sequence tag (EST) approach for evolutionary and developmental studies of a new organism Biol Bull 14 284 302
    • (2008) Biol Bull , vol.14 , pp. 284-302
    • Freeman, Jr.R.M.1    Wu, M.2    Cordonnier-Pratt, M.M.3    Pratt, L.H.4    Gruber, C.E.5    Smith, M.6    Lander, E.S.7    Stange-Thomann, N.8    Lowe, C.J.9    Gerhart, J.10    Kirschner, M.11
  • 8
    • 33344455174 scopus 로고    scopus 로고
    • Autophosphorylation of FGFR1 kinase is mediated by a sequential and precisely ordered reaction
    • CM Furdui ED Lew J Schlessinger KS Anderson 2006 Autophosphorylation of FGFR1 kinase is mediated by a sequential and precisely ordered reaction Mol Cell 21 711 717
    • (2006) Mol Cell , vol.21 , pp. 711-717
    • Furdui, C.M.1    Lew, E.D.2    Schlessinger, J.3    Anderson, K.S.4
  • 9
    • 0018263844 scopus 로고
    • Why genes in pieces?
    • W Gilbert 1978 Why genes in pieces? Nature 271 501
    • (1978) Nature , vol.271 , pp. 501
    • Gilbert, W.1
  • 10
    • 0029849087 scopus 로고    scopus 로고
    • Heartless encodes a fibroblast growth factor receptor (DFR1/DFGF-R2) involved in the directional migration of early mesodermal cells in the Drosophila embryo
    • S Gisselbrecht JB Skeath CQ Doe AM Michelson 1996 heartless encodes a fibroblast growth factor receptor (DFR1/DFGF-R2) involved in the directional migration of early mesodermal cells in the Drosophila embryo Genes Dev 10 3003 3017
    • (1996) Genes Dev , vol.10 , pp. 3003-3017
    • Gisselbrecht, S.1    Skeath, J.B.2    Doe, C.Q.3    Michelson, A.M.4
  • 11
    • 33646875489 scopus 로고    scopus 로고
    • Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains
    • J Grassot M Gouy G Perriere G Mouchiroud 2006 Origin and molecular evolution of receptor tyrosine kinases with immunoglobulin-like domains Mol Biol Evol 23 1232 1241
    • (2006) Mol Biol Evol , vol.23 , pp. 1232-1241
    • Grassot, J.1    Gouy, M.2    Perriere, G.3    Mouchiroud, G.4
  • 12
    • 0029020282 scopus 로고
    • The eukaryotic protein kinase superfamily: Kinase (catalytic) domain structure and classification
    • SK Hanks T Hunter 1995 The eukaryotic protein kinase superfamily: kinase (catalytic) domain structure and classification FASEB J 9 576 596
    • (1995) FASEB J , vol.9 , pp. 576-596
    • Hanks, S.K.1    Hunter, T.2
  • 13
    • 0023885305 scopus 로고
    • The protein kinase family: Conserved features and deduced phylogeny of the catalytic domain
    • SK Hanks AM Quinn T Hunter 1988 The protein kinase family: conserved features and deduced phylogeny of the catalytic domain Science 241 42 52
    • (1988) Science , vol.241 , pp. 42-52
    • Hanks, S.K.1    Quinn, A.M.2    Hunter, T.3
  • 14
    • 0027517007 scopus 로고
    • Pattern formation in Hydra vulgaris is controlled by lithium sensitive processes
    • M Hassel K Albert S Hofheinz 1993 Pattern formation in Hydra vulgaris is controlled by lithium sensitive processes Dev Biol 156 362 371
    • (1993) Dev Biol , vol.156 , pp. 362-371
    • Hassel, M.1    Albert, K.2    Hofheinz, S.3
  • 15
    • 34249746341 scopus 로고    scopus 로고
    • Molecular phylogenetics in Hydra, a classical model in evolutionary developmental biology
    • G Hemmrich B Anokhin H Zacharias TC Bosch 2007 Molecular phylogenetics in Hydra, a classical model in evolutionary developmental biology Mol Phylogenetics Evol 44 281 290
    • (2007) Mol Phylogenetics Evol , vol.44 , pp. 281-290
    • Hemmrich, G.1    Anokhin, B.2    Zacharias, H.3    Bosch, T.C.4
  • 17
    • 18144421574 scopus 로고    scopus 로고
    • FGF signaling in flies and worms: More and more relevant to vertebrate biology
    • Huang P, Stern MJ (2005) FGF signaling in flies and worms: More and more relevant to vertebrate biology. Cytokine Growth Factor Rev 16:151-158
    • (2005) Cytokine Growth Factor Rev , vol.16 , pp. 151-158
    • Huang, P.1    Stern, M.J.2
  • 18
    • 4544303883 scopus 로고    scopus 로고
    • Gene expression profiles of transcription factors and signalling molecules in the ascidian embryo: Towards a comprehensive understanding of gene networks
    • KS Imai K Hino K Yagi N Satoh Y Satou 2004 Gene expression profiles of transcription factors and signalling molecules in the ascidian embryo: towards a comprehensive understanding of gene networks Development 131 16 4047 4058
    • (2004) Development , vol.131 , Issue.16 , pp. 4047-4058
    • Imai, K.S.1    Hino, K.2    Yagi, K.3    Satoh, N.4    Satou, Y.5
  • 19
    • 65549142248 scopus 로고    scopus 로고
    • FGF ligands in Drosophila have distinct activities required to support cell migration and differentiation
    • S Kadam A McMahon P Tzou A Stathopoulos 2009 FGF ligands in Drosophila have distinct activities required to support cell migration and differentiation Development 136 739 747
    • (2009) Development , vol.136 , Issue.5601 , pp. 739-747
    • Kadam, S.1    McMahon, A.2    Tzou, P.3    Stathopoulos, A.4
  • 21
    • 0035909922 scopus 로고    scopus 로고
    • A receptor tyrosine kinase from choanoflagellates: Molecular insights into early animal evolution
    • N King SB Carroll 2001 A receptor tyrosine kinase from choanoflagellates: molecular insights into early animal evolution Proc Natl Acad Sci U S A 98 26 15032 15037
    • (2001) Proc Natl Acad Sci U S A , vol.98 , Issue.26 , pp. 15032-15037
    • King, N.1    Carroll, S.B.2
  • 23
    • 61349174547 scopus 로고    scopus 로고
    • Insight into the structural mechanism of the bi-modal action of an NCAM mimetic, the C3 peptide
    • VV Kiselyov S Li V Berezin E Bock 2009 Insight into the structural mechanism of the bi-modal action of an NCAM mimetic, the C3 peptide Neurosci Lett 452 224 227
    • (2009) Neurosci Lett , vol.452 , pp. 224-227
    • Kiselyov, V.V.1    Li, S.2    Berezin, V.3    Bock, E.4
  • 24
    • 0026759727 scopus 로고
    • Breathless, a Drosophila FGF receptor homolog, is essential for migration of tracheal and specific midline glial cells
    • C Klämbt L Glazer BZ Shilo 1992 breathless, a Drosophila FGF receptor homolog, is essential for migration of tracheal and specific midline glial cells Genes Dev 6 1668 1678
    • (1992) Genes Dev , vol.6 , pp. 1668-1678
    • Klämbt, C.1    Glazer, L.2    Shilo, B.Z.3
  • 25
    • 69649107341 scopus 로고    scopus 로고
    • Differential and overlapping functions of two closely related Drosophila FGF8-like growth factors in mesoderm development
    • A Klingseisen I Clark MHA Gryzik 2009 Differential and overlapping functions of two closely related Drosophila FGF8-like growth factors in mesoderm development Development 136 2393 2402
    • (2009) Development , vol.136 , pp. 2393-2402
    • Klingseisen, A.1    Clark, I.2    Gryzik, M.H.A.3
  • 26
    • 42949127648 scopus 로고    scopus 로고
    • FGFR4 and its novel splice form in myogenic cells: Interplay of glycosylation and tyrosine phosphorylation
    • BA Kwiatkowski I Kirillova RE Richard D Israeli Z Yablonka-Reuveni 2008 FGFR4 and its novel splice form in myogenic cells: interplay of glycosylation and tyrosine phosphorylation J Cell Physiol 215 803 817
    • (2008) J Cell Physiol , vol.215 , pp. 803-817
    • Kwiatkowski, B.A.1    Kirillova, I.2    Richard, R.E.3    Israeli, D.4    Yablonka-Reuveni, Z.5
  • 28
    • 0028152493 scopus 로고
    • Cell transformation by fibroblast growth factors can be suppressed by truncated fibroblast growth factor receptors
    • Y Li C Basilico A Mansukhani 1994 Cell transformation by fibroblast growth factors can be suppressed by truncated fibroblast growth factor receptors Mol Cell Biol 14 11 7660 7669
    • (1994) Mol Cell Biol , vol.14 , Issue.11 , pp. 7660-7669
    • Liu, M.1    Grigoriev, A.2
  • 29
    • 4143069189 scopus 로고    scopus 로고
    • Protein domains correlate strongly with exons in multiple eukaryotic genomes-evidence of exon shuffling?
    • M Liu A Grigoriev 2004 Protein domains correlate strongly with exons in multiple eukaryotic genomes-evidence of exon shuffling? Trends Genet 20 399 403
    • (2004) Trends Genet , vol.20 , Issue.11 , pp. 399-403
    • Liu, M.1    Grigoriev, A.2
  • 30
    • 3843106810 scopus 로고    scopus 로고
    • Worm genomes hold the smoking guns of intron gain
    • JM Logsdon 2004 Worm genomes hold the smoking guns of intron gain Proc Natl Acad Sci U S A 101 11195 11196
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 11195-11196
    • Logsdon, J.M.1
  • 32
    • 33846842441 scopus 로고    scopus 로고
    • FGF signaling in gastrulation and neuronal development in Nematostella vectensis, an anthozoan cnidarian
    • DQ Matus GH Thomsen MQ Martindale 2007 FGF signaling in gastrulation and neuronal development in Nematostella vectensis, an anthozoan cnidarian Dev Genes Evol 217 137 148
    • (2007) Dev Genes Evol , vol.217 , pp. 137-148
    • Matus, D.Q.1    Thomsen, G.H.2    Martindale, M.Q.3
  • 33
    • 0037320850 scopus 로고    scopus 로고
    • Of urchins and men: Evolution of an alternative splicing unit in fibroblast growth factor receptor genes
    • N Mistry W Harrington E Lasda EJ Wagner MA Garcia-Blanco 2003 Of urchins and men: evolution of an alternative splicing unit in fibroblast growth factor receptor genes RNA 9 209 217
    • (2003) RNA , vol.9 , pp. 209-217
    • Mistry, N.1    Harrington, W.2    Lasda, E.3    Wagner, E.J.4    Garcia-Blanco, M.A.5
  • 35
    • 0035854648 scopus 로고    scopus 로고
    • Sequence analyses and comparative modelling of fly and worm fibroblast growth factor receptors indicate that the determinants for FGF and heparin binding are retained in evolution
    • HG Nagendra AE Harrington NJ Harmer L Pellegrini TL Blundell DF Burke 2001 Sequence analyses and comparative modelling of fly and worm fibroblast growth factor receptors indicate that the determinants for FGF and heparin binding are retained in evolution FEBS Lett 501 51 58
    • (2001) FEBS Lett , vol.501 , pp. 51-58
    • Nagendra, H.G.1    Harrington, A.E.2    Harmer, N.J.3    Pellegrini, L.4    Blundell, T.L.5    Burke, D.F.6
  • 36
    • 0029764116 scopus 로고    scopus 로고
    • Ligand-independent activation of fibroblast growth factor receptors by point mutations in the extracellular, transmembrane and kinase domains
    • KM Neilson R Friesel 1996 Ligand-independent activation of fibroblast growth factor receptors by point mutations in the extracellular, transmembrane and kinase domains J Biol Chem 271 40 25049 25057
    • (1996) J Biol Chem , vol.271 , Issue.40 , pp. 25049-25057
    • Neilson, K.M.1    Friesel, R.2
  • 37
    • 0036277869 scopus 로고    scopus 로고
    • Planarian fibroblast growth factor receptor homologs expressed in stem cells and cephalic ganglions
    • K Ogawa C Kobayashi T Hayashi H Orii K Watanabe K Agata 2002 Planarian fibroblast growth factor receptor homologs expressed in stem cells and cephalic ganglions Dev Growth Differ 44 191 204
    • (2002) Dev Growth Differ , vol.44 , pp. 191-204
    • Ogawa, K.1    Kobayashi, C.2    Hayashi, T.3    Orii, H.4    Watanabe, K.5    Agata, K.6
  • 43
    • 49949092698 scopus 로고    scopus 로고
    • FGF signalling controls formation of the apical sensory organ in the cnidarian Nematostella vectensis
    • F Rentzsch JH Fritzenwanker CB Scholz U Technau 2008 FGF signalling controls formation of the apical sensory organ in the cnidarian Nematostella vectensis Development 135 1761 1769
    • (2008) Development , vol.135 , pp. 1761-1769
    • Rentzsch, F.1    Fritzenwanker, J.H.2    Scholz, C.B.3    Technau, U.4
  • 44
    • 2542603045 scopus 로고    scopus 로고
    • Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation
    • A Resch Y Xing A Alekseyenko B Modrek C Lee 2004 Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation Nucleic Acids Res 32 1261 1269
    • (2004) Nucleic Acids Res , vol.32 , pp. 1261-1269
    • Resch, A.1    Xing, Y.2    Alekseyenko, A.3    Modrek, B.4    Lee, C.5
  • 45
    • 29344441657 scopus 로고    scopus 로고
    • Animal evolution and the molecular signature of radiation compressed in time
    • A Rokas D Kruger SB Carroll 2005 Animal evolution and the molecular signature of radiation compressed in time Science 310 1933 1938
    • (2005) Science , vol.310 , pp. 1933-1938
    • Rokas, A.1    Kruger, D.2    Carroll, S.B.3
  • 46
    • 67651124996 scopus 로고    scopus 로고
    • Splicing in the eukaryotic ancestor: Form, function and dysfunction
    • SW Roy M Irimia 2009 Splicing in the eukaryotic ancestor: form, function and dysfunction Trends Ecol Evol 28 8 447 455
    • (2009) Trends Ecol Evol , vol.28 , Issue.8 , pp. 447-455
    • Roy, S.W.1    Irimia, M.2
  • 47
    • 33845950805 scopus 로고    scopus 로고
    • The fibroblast growth factor receptor acidic box is essential for interactions with N-cadherin and all of the major isoforms of neural cell adhesion molecule
    • E Sanchez-Heras FV Howell G Williams P Doherty 2006 The fibroblast growth factor receptor acidic box is essential for interactions with N-cadherin and all of the major isoforms of neural cell adhesion molecule J Biol Chem 281 35208 35216
    • (2006) J Biol Chem , vol.281 , pp. 35208-35216
    • Sanchez-Heras, E.1    Howell, F.V.2    Williams, G.3    Doherty, P.4
  • 50
    • 0034644539 scopus 로고    scopus 로고
    • Cell signaling by receptor tyrosine kinases
    • J Schlessinger 2000 Cell signaling by receptor tyrosine kinases Cell 103 211 225
    • (2000) Cell , vol.103 , pp. 211-225
    • Schlessinger, J.1
  • 51
    • 33847741060 scopus 로고    scopus 로고
    • The origins of polypeptide domains
    • EE Schmidt CJ Davies 2007 The origins of polypeptide domains Bioessays 29 262 270
    • (2007) Bioessays , vol.29 , pp. 262-270
    • Schmidt, E.E.1    Davies, C.J.2
  • 52
    • 41949100632 scopus 로고    scopus 로고
    • From development to biodiversity-Tribolium castaneum, an insect model organism for short germ band development
    • R Schröder A Beermann N Wittkopp R Lutz 2008 From development to biodiversity-Tribolium castaneum, an insect model organism for short germ band development Dev Genes Evol 218 119 126
    • (2008) Dev Genes Evol , vol.218 , pp. 119-126
    • Schröder, R.1    Beermann, A.2    Wittkopp, N.3    Lutz, R.4
  • 53
    • 0035815704 scopus 로고    scopus 로고
    • A novel alternatively spliced fibroblast growth factor receptor 3 isoform lacking the acid box domain is expressed during chondrogenic differentiation of ATDC5 cells
    • A Shimizu K Tada C Shukunami A Shimizu K Tada C Shukunami 2001 A novel alternatively spliced fibroblast growth factor receptor 3 isoform lacking the acid box domain is expressed during chondrogenic differentiation of ATDC5 cells J Biol Chem 276 11031 11040
    • (2001) J Biol Chem , vol.276 , pp. 11031-11040
    • Shimizu, A.1    Tada, K.2    Shukunami, C.3    Shimizu, A.4    Tada, K.5    Shukunami, C.6
  • 55
    • 55949109631 scopus 로고    scopus 로고
    • Structural basis of protein kinase C isoform function
    • SF Steinberg 2008 Structural basis of protein kinase C isoform function Physiol Rev 88 1341 1378
    • (2008) Physiol Rev , vol.88 , pp. 1341-1378
    • Steinberg, S.F.1
  • 56
    • 4544291828 scopus 로고    scopus 로고
    • Signaling by the FGFR-like tyrosine kinase, Kringelchen, is essential for bud detachment in Hydra vulgaris
    • S Sudhop F Coulier A Bieller A Vogt T Hotz M Hassel 2004 Signaling by the FGFR-like tyrosine kinase, Kringelchen, is essential for bud detachment in Hydra vulgaris Development 131 4001 4011
    • (2004) Development , vol.131 , pp. 4001-4011
    • Sudhop, S.1    Coulier, F.2    Bieller, A.3    Vogt, A.4    Hotz, T.5    Hassel, M.6
  • 57
    • 34948908573 scopus 로고    scopus 로고
    • A surprising abundance of human disease genes in a simple "basal" animal, the starlet sea anemone (Nematostella vectensis)
    • JC Sullivan JR Finnerty 2007 A surprising abundance of human disease genes in a simple "basal" animal, the starlet sea anemone (Nematostella vectensis) Genome 50 689 692
    • (2007) Genome , vol.50 , pp. 689-692
    • Sullivan, J.C.1    Finnerty, J.R.2
  • 58
    • 34447330054 scopus 로고    scopus 로고
    • A high percentage of introns in human genes were present early in animal evolution: Evidence from the basal metazoan Nematostella vectensis
    • JC Sullivan AM Reitzel JR Finnerty 2006 A high percentage of introns in human genes were present early in animal evolution: evidence from the basal metazoan Nematostella vectensis Genome Inform 17 219 229
    • (2006) Genome Inform , vol.17 , pp. 219-229
    • Sullivan, J.C.1    Reitzel, A.M.2    Finnerty, J.R.3
  • 59
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • K Tamura J Dudley M Nei S Kumar 2007 MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0 Mol Biol Evol 24 1596 1599
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 61
    • 27744534898 scopus 로고    scopus 로고
    • Functions and regulations of fibroblast growth factor signaling during embryonic development
    • B Thisse C Thisse 2005 Functions and regulations of fibroblast growth factor signaling during embryonic development Dev Biol 287 390 402
    • (2005) Dev Biol , vol.287 , pp. 390-402
    • Thisse, B.1    Thisse, C.2
  • 62
    • 41949090434 scopus 로고    scopus 로고
    • The genome of the model beetle and pest Tribolium castaneum
    • Tribolium Genome Sequencing Consortium
    • Tribolium Genome Sequencing Consortium 2008 The genome of the model beetle and pest Tribolium castaneum Nature 452 949 955
    • (2008) Nature , vol.452 , pp. 949-955
  • 64
    • 0035189310 scopus 로고    scopus 로고
    • Spidey: A tool for mRNA-to-genomic alignments
    • Wheelan SJ, Church DM, Ostell JM. (2001) Spidey: a tool for mRNA-to-genomic alignments. Genome Res. 11(11):1952-1957
    • (2001) Genome Res. , vol.11 , Issue.11 , pp. 1952-1957
    • Wheelan, S.J.1    Church, D.M.2    Ostell, J.M.3


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