메뉴 건너뛰기




Volumn 32, Issue 4, 2004, Pages 1261-1269

Evidence for a subpopulation of conserved alternative splicing events under selection pressure for protein reading frame preservation

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEOTIDE; PROTEIN; RNA;

EID: 2542603045     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh284     Document Type: Article
Times cited : (78)

References (29)
  • 1
    • 0342723790 scopus 로고    scopus 로고
    • Frequent alternative splicing of human genes
    • Mironov,A.A., Fickett,J.W. and Gelfand,M.S. (1999) Frequent alternative splicing of human genes. Genome Res., 9, 1288-1293.
    • (1999) Genome Res. , vol.9 , pp. 1288-1293
    • Mironov, A.A.1    Fickett, J.W.2    Gelfand, M.S.3
  • 3
    • 0034029236 scopus 로고    scopus 로고
    • ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome
    • Croft,L., Schandorff,S., Clark,F., Burrage,K., Arctander,P. and Mattick,J.S. (2000) ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome. Nature Genet., 24, 340-341.
    • (2000) Nature Genet. , vol.24 , pp. 340-341
    • Croft, L.1    Schandorff, S.2    Clark, F.3    Burrage, K.4    Arctander, P.5    Mattick, J.S.6
  • 4
    • 0035036534 scopus 로고    scopus 로고
    • Gene structure prediction and alternative splicing analysis using genomically aligned ESTs
    • Kan,Z., Rouchka,E.C., Gish,W.R. and States,D.J. (2001) Gene structure prediction and alternative splicing analysis using genomically aligned ESTs. Genome Res., 11, 889-900.
    • (2001) Genome Res. , vol.11 , pp. 889-900
    • Kan, Z.1    Rouchka, E.C.2    Gish, W.R.3    States, D.J.4
  • 5
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • I.H.G.S Consortium
    • I.H.G.S Consortium (2001) Initial sequencing and analysis of the human genome. Nature, 409, 860-921.
    • (2001) Nature , vol.409 , pp. 860-921
  • 6
    • 0035393343 scopus 로고    scopus 로고
    • Genome-wide analysis of alternative splicing using human expressed sequence data
    • Modrek,B., Resch,A., Grasso,C. and Lee,C. (2001) Genome-wide analysis of alternative splicing using human expressed sequence data. Nucleic Acids Res., 29, 2850-2859.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 2850-2859
    • Modrek, B.1    Resch, A.2    Grasso, C.3    Lee, C.4
  • 7
    • 0036337915 scopus 로고    scopus 로고
    • A genomic view of alternative splicing
    • Modrek,B. and Lee,C. (2002) A genomic view of alternative splicing. Nature Genet., 30, 13-19.
    • (2002) Nature Genet. , vol.30 , pp. 13-19
    • Modrek, B.1    Lee, C.2
  • 9
    • 0037246718 scopus 로고    scopus 로고
    • ASAP: The Alternative Splicing Annotation Project
    • Lee,C., Atanelov,L., Modrek,B. and Xing,Y. (2003) ASAP: The Alternative Splicing Annotation Project. Nucleic Acids Res., 31, 101-105.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 101-105
    • Lee, C.1    Atanelov, L.2    Modrek, B.3    Xing, Y.4
  • 10
    • 0347186235 scopus 로고    scopus 로고
    • Theoretical analysis of alternative splice forms using computational methods
    • Boue,S., Vingron,M., Kriventseva,E. and Koch,I. (2002) Theoretical analysis of alternative splice forms using computational methods Bioinformatics, 18 (Suppl. 2), S65-S73.
    • (2002) Bioinformatics , vol.18 , Issue.SUPPL. 2
    • Boue, S.1    Vingron, M.2    Kriventseva, E.3    Koch, I.4
  • 12
    • 18744390284 scopus 로고    scopus 로고
    • Selecting for functional alternative splices in ESTs
    • Kan,Z., States,D. and Gish,W. (2002) Selecting for functional alternative splices in ESTs. Genome Res., 12, 1837-1845.
    • (2002) Genome Res. , vol.12 , pp. 1837-1845
    • Kan, Z.1    States, D.2    Gish, W.3
  • 13
    • 0037422575 scopus 로고    scopus 로고
    • Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans
    • Lewis,B.P., Green,R.E. and Brenner,S.E. (2003) Evidence for the widespread coupling of alternative splicing and nonsense-mediated mRNA decay in humans. Proc. Natl Acad. Sci. USA, 100, 189-192.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 189-192
    • Lewis, B.P.1    Green, R.E.2    Brenner, S.E.3
  • 14
    • 0034721644 scopus 로고    scopus 로고
    • Protein diversity from alternative splicing: A challenge for bioinformatics and post-genome biology
    • Black,D.L. (2000) Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology. Cell, 103, 367-370.
    • (2000) Cell , vol.103 , pp. 367-370
    • Black, D.L.1
  • 16
    • 0037705467 scopus 로고    scopus 로고
    • Conservation of human alternative splice events in mouse
    • Thanaraj,T.A., Clark,F. and Muilu,J. (2003) Conservation of human alternative splice events in mouse. Nucleic Acids Res., 31, 2544-2552.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 2544-2552
    • Thanaraj, T.A.1    Clark, F.2    Muilu, J.3
  • 17
    • 0032574738 scopus 로고    scopus 로고
    • Towards a resolution of the introns early/late debate: Only phase zero introns are correlated with the structure of ancient proteins
    • de Souza,S.J., Long,M., Klein,R.J., Roy,S., Lin,S. and Gilbert,W. (1998) Towards a resolution of the introns early/late debate: only phase zero introns are correlated with the structure of ancient proteins. Proc. Natl Acad. Sci. USA, 95, 5094-5098.
    • (1998) Proc. Natl. Acad. Sci. USA , vol.95 , pp. 5094-5098
    • de Souza, S.J.1    Long, M.2    Klein, R.J.3    Roy, S.4    Lin, S.5    Gilbert, W.6
  • 18
    • 0037370461 scopus 로고    scopus 로고
    • Evolution of alternative splicing: Deletions, insertions and origin of functional parts of proteins from intron sequences
    • Kondrashov,F.A. and Koonin,E.V. (2003) Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences. Trends Genet., 19, 115-119.
    • (2003) Trends Genet. , vol.19 , pp. 115-119
    • Kondrashov, F.A.1    Koonin, E.V.2
  • 19
    • 0038617729 scopus 로고    scopus 로고
    • Alternative splicing in the human, mouse and rat genomes is associated with an increased rate of exon creation/loss
    • Modrek,B. and Lee,C. (2003) Alternative splicing in the human, mouse and rat genomes is associated with an increased rate of exon creation/loss. Nature Genet., 34, 177-180.
    • (2003) Nature Genet. , vol.34 , pp. 177-180
    • Modrek, B.1    Lee, C.2
  • 20
    • 0037669010 scopus 로고    scopus 로고
    • Low conservation of alternative splicing patterns in the human and mouse genomes
    • Nurtdinov,R.N., Artamonova,I.I., Mironov,A.A. and Gelfand,M.S. (2003) Low conservation of alternative splicing patterns in the human and mouse genomes. Hum. Mol. Genet., 12, 1313-1320.
    • (2003) Hum. Mol. Genet. , vol.12 , pp. 1313-1320
    • Nurtdinov, R.N.1    Artamonova, I.I.2    Mironov, A.A.3    Gelfand, M.S.4
  • 21
    • 0038486897 scopus 로고    scopus 로고
    • Intronic sequences flanking alternatively spliced exons are conserved between human and mouse
    • Sorek,R. and Ast,G. (2003) Intronic sequences flanking alternatively spliced exons are conserved between human and mouse. Genome Res., 13, 1631-1637.
    • (2003) Genome Res. , vol.13 , pp. 1631-1637
    • Sorek, R.1    Ast, G.2
  • 22
    • 0031256078 scopus 로고    scopus 로고
    • Pieces of the puzzle: Expressed sequence tags and the catalog of human genes
    • Schuler,G. (1997) Pieces of the puzzle: expressed sequence tags and the catalog of human genes. J. Mol. Med., 75, 694 698.
    • (1997) J. Mol. Med. , vol.75 , pp. 694-698
    • Schuler, G.1
  • 23
    • 0036712421 scopus 로고    scopus 로고
    • Genome-wide detection of tissue-specific alternative splicing in the human transcriptome
    • Xu,Q., Modrek,B. and Lee,C. (2002) Genome-wide detection of tissue-specific alternative splicing in the human transcriptome. Nucleic Acids Res., 30, 3754-3766.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3754-3766
    • Xu, Q.1    Modrek, B.2    Lee, C.3
  • 25
    • 0141974926 scopus 로고    scopus 로고
    • Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences
    • Xu,Q. and Lee,C. (2003) Discovery of novel splice forms and functional analysis of cancer-specific alternative splicing in human expressed sequences. Nucleic Acids Res., 31, 5635-5643.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 5635-5643
    • Xu, Q.1    Lee, C.2
  • 27
    • 0014757386 scopus 로고
    • A general method applicable to the search for similarities in the amino acid sequence of two proteins
    • Needleman,S.B. and Wunsch,C.D. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol., 48, 443-453.
    • (1970) J. Mol. Biol. , vol.48 , pp. 443-453
    • Needleman, S.B.1    Wunsch, C.D.2
  • 28
    • 0036203448 scopus 로고    scopus 로고
    • Multiple sequence alignment using partial order graphs
    • Lee,C., Grasso,C. and Sharlow,M. (2002) Multiple sequence alignment using partial order graphs. Bioinformatics, 18, 452-464.
    • (2002) Bioinformatics , vol.18 , pp. 452-464
    • Lee, C.1    Grasso, C.2    Sharlow, M.3
  • 29
    • 0034084035 scopus 로고    scopus 로고
    • Analysis of expressed sequence tags indicates 35,000 human genes
    • Ewing,B. and Green,P. (2000) Analysis of expressed sequence tags indicates 35,000 human genes. Nature Genet., 25, 232-234.
    • (2000) Nature Genet. , vol.25 , pp. 232-234
    • Ewing, B.1    Green, P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.