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Volumn 454, Issue 7207, 2008, Pages 955-960

The Trichoplax genome and the nature of placozoans

(21)  Srivastava, Mansi a   Begovic, Emina a,b   Chapman, Jarrod b   Putnam, Nicholas H b,g   Hellsten, Uffe b   Kawashima, Takeshi a,c   Kuo, Alan b   Mitros, Therese a   Salamov, Asaf b   Carpenter, Meredith L a   Signorovitch, Ana Y d   Moreno, Maria A d   Kamm, Kai e   Grimwood, Jane f   Schmutz, Jeremy f   Shapiro, Harris b   Grigoriev, Igor V b   Buss, Leo W d   Schierwater, Bernd d,e   Dellaporta, Stephen L d   more..


Author keywords

[No Author keywords available]

Indexed keywords

CLADISTICS; CYTOLOGY; GENETIC STRUCTURE; GENOME; METAZOAN; PHYLOGENY; SIGNALING;

EID: 50049092481     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature07191     Document Type: Article
Times cited : (692)

References (56)
  • 1
    • 84945508982 scopus 로고    scopus 로고
    • Schulze, F. E. Trichoplax adhaerens, nov. gen., nov. spec. Zool. Anz. 6, 92-97 (1883).
    • Schulze, F. E. Trichoplax adhaerens, nov. gen., nov. spec. Zool. Anz. 6, 92-97 (1883).
  • 3
    • 0024903931 scopus 로고
    • Growth and behavior of Trichoplax adhaerens: First record for the phylum Placozoa in Hawaii
    • Pearse, V. B. Growth and behavior of Trichoplax adhaerens: first record for the phylum Placozoa in Hawaii. Pacif. Sci. 43, 117-121 (1989).
    • (1989) Pacif. Sci , vol.43 , pp. 117-121
    • Pearse, V.B.1
  • 4
    • 1242343995 scopus 로고    scopus 로고
    • Occurrence in the field of a long-term, year-round, stable population of placozoans
    • Maruyama, Y. K. Occurrence in the field of a long-term, year-round, stable population of placozoans. Biol. Bull. 206, 55-60 (2004).
    • (2004) Biol. Bull , vol.206 , pp. 55-60
    • Maruyama, Y.K.1
  • 5
    • 9244239784 scopus 로고    scopus 로고
    • Placozoa - no longer a phylum of one
    • Voigt, O. et al. Placozoa - no longer a phylum of one. Curr. Biol. 14, R944-R945 (2004).
    • (2004) Curr. Biol , vol.14
    • Voigt, O.1
  • 6
    • 35449007665 scopus 로고    scopus 로고
    • Field biology of placozoans (Trichoplax): Distribution, diversity, biotic interactions
    • Pearse, V. B. & Voigt, O. Field biology of placozoans (Trichoplax): distribution, diversity, biotic interactions. Integr. Comp. Biol. 47, 677-692 (2007).
    • (2007) Integr. Comp. Biol , vol.47 , pp. 677-692
    • Pearse, V.B.1    Voigt, O.2
  • 8
    • 0000131937 scopus 로고
    • Trichoplax adhaerens, F.E. Schulze und die Entstehung der Metazoen.
    • Grell, K. G. Trichoplax adhaerens, F.E. Schulze und die Entstehung der Metazoen. Naturwiss. Rundsch. 24, 160-161 (1971).
    • (1971) Naturwiss. Rundsch , vol.24 , pp. 160-161
    • Grell, K.G.1
  • 9
    • 30444450767 scopus 로고    scopus 로고
    • My favorite animal, Trichoplax adhaerens
    • Schierwater, B. My favorite animal, Trichoplax adhaerens. BioEssays 27, 1294-1302 (2005).
    • (2005) BioEssays , vol.27 , pp. 1294-1302
    • Schierwater, B.1
  • 10
    • 0000139403 scopus 로고
    • The ventral epithelium of Trichoplax adhaerens (Placozoa): Cytoskeletal structures, cell contacts and endocytosis
    • Ruthmann, A., Behrendt, G. & Wahl, R. The ventral epithelium of Trichoplax adhaerens (Placozoa): Cytoskeletal structures, cell contacts and endocytosis. Zoomorphology 106, 115-112 (1986).
    • (1986) Zoomorphology , vol.106 , pp. 115-112
    • Ruthmann, A.1    Behrendt, G.2    Wahl, R.3
  • 11
    • 0001061121 scopus 로고    scopus 로고
    • Wenderoth, H. Transepithelial cytophagy by Trichoplax adhaerens F. E. Schulze (Placozoa) feeding on yeast. Z. Naturforsch. 41C, 343-347 (1986).
    • Wenderoth, H. Transepithelial cytophagy by Trichoplax adhaerens F. E. Schulze (Placozoa) feeding on yeast. Z. Naturforsch. 41C, 343-347 (1986).
  • 12
    • 0000240783 scopus 로고    scopus 로고
    • Grell, K. G. Eibildung und Furchung von Trichoplax adhaerens F. E. Schulze (Placozoa). Z. Morph. Tiere 73, 297-314 (1972).
    • Grell, K. G. Eibildung und Furchung von Trichoplax adhaerens F. E. Schulze (Placozoa). Z. Morph. Tiere 73, 297-314 (1972).
  • 13
    • 0002456019 scopus 로고
    • Ergänzende untersuchungen zur ultrastruktur von Trichoplax adhaerens F.E. Schulze (Placozoa).
    • Grell, K. G. & Benwitz, G. Ergänzende untersuchungen zur ultrastruktur von Trichoplax adhaerens F.E. Schulze (Placozoa). Zoomorphology 98, 47-67 (1981).
    • (1981) Zoomorphology , vol.98 , pp. 47-67
    • Grell, K.G.1    Benwitz, G.2
  • 15
    • 0029023417 scopus 로고
    • Class-level relationships in the phylum Cnidaria: Molecular and morphological evidence
    • Bridge, D., Cunningham, C. W., DeSalle, R. & Buss, L. W. Class-level relationships in the phylum Cnidaria: molecular and morphological evidence. Mol. Biol. Evol. 12, 679-689 (1995).
    • (1995) Mol. Biol. Evol , vol.12 , pp. 679-689
    • Bridge, D.1    Cunningham, C.W.2    DeSalle, R.3    Buss, L.W.4
  • 16
    • 0032433340 scopus 로고    scopus 로고
    • Evaluating multiple alternative hypotheses for the origin of Bilateria: An analysis of 18S rRNA molecular evidence
    • Collins, A. G. Evaluating multiple alternative hypotheses for the origin of Bilateria: an analysis of 18S rRNA molecular evidence. Proc. Natl Acad. Sci. USA 95, 15458-15463 (1998).
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 15458-15463
    • Collins, A.G.1
  • 17
    • 0037229216 scopus 로고    scopus 로고
    • Placozoa are not derived cnidarians: Evidence from molecular morphology
    • Ender, A. & Schierwater, B. Placozoa are not derived cnidarians: evidence from molecular morphology. Mol. Biol. Evol. 20, 130-134 (2003).
    • (2003) Mol. Biol. Evol , vol.20 , pp. 130-134
    • Ender, A.1    Schierwater, B.2
  • 18
    • 34247161726 scopus 로고    scopus 로고
    • Phylogenetic position of Placozoa based on large subunit (LSU) and small subunit (SSU) rRNA genes
    • da Silva, F. B., Muschner, V. C. & Bonatto, S. L. Phylogenetic position of Placozoa based on large subunit (LSU) and small subunit (SSU) rRNA genes. Genet. Mol. Biol. 30, 127-132 (2007).
    • (2007) Genet. Mol. Biol , vol.30 , pp. 127-132
    • da Silva, F.B.1    Muschner, V.C.2    Bonatto, S.L.3
  • 19
    • 33745021824 scopus 로고    scopus 로고
    • Mitochondrial genome of Trichoplax adhaerens supports placozoa as the basal lower metazoan phylum
    • Dellaporta, S. L. et al. Mitochondrial genome of Trichoplax adhaerens supports placozoa as the basal lower metazoan phylum. Proc. Natl Acad. Sci. USA 103, 8751-8756 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 8751-8756
    • Dellaporta, S.L.1
  • 20
    • 33846557231 scopus 로고    scopus 로고
    • Comparative genomics of large mitochondria in placozoans
    • Signorovitch, A. Y., Buss, L. W. & Dellaporta, S. L. Comparative genomics of large mitochondria in placozoans. PLoS Genet. 3, e13 (2007).
    • (2007) PLoS Genet , vol.3
    • Signorovitch, A.Y.1    Buss, L.W.2    Dellaporta, S.L.3
  • 22
    • 0030950735 scopus 로고    scopus 로고
    • Human whole-genome shotgun sequencing
    • Weber, J. L. & Myers, E. W. Human whole-genome shotgun sequencing. Genome Res. 7, 401-409 (1997).
    • (1997) Genome Res , vol.7 , pp. 401-409
    • Weber, J.L.1    Myers, E.W.2
  • 23
    • 34447300950 scopus 로고    scopus 로고
    • Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization
    • Putnam, N. H. et al. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317, 86-94 (2007).
    • (2007) Science , vol.317 , pp. 86-94
    • Putnam, N.H.1
  • 24
    • 34547697011 scopus 로고    scopus 로고
    • Glass sponges and bilaterian animals share derived mitochondrial genomic features: A common ancestry or parallel evolution?
    • Haen, K. M., Lang, B. F., Pomponi, S. A. & Lavrov, D. V. Glass sponges and bilaterian animals share derived mitochondrial genomic features: a common ancestry or parallel evolution? Mol. Biol. Evol. 24, 1518-1527 (2007).
    • (2007) Mol. Biol. Evol , vol.24 , pp. 1518-1527
    • Haen, K.M.1    Lang, B.F.2    Pomponi, S.A.3    Lavrov, D.V.4
  • 25
    • 17744381377 scopus 로고    scopus 로고
    • Mitochondrial genomes of two demosponges provide insights into an early stage of animal evolution
    • Lavrov, D. V., Forget, L., Kelly, M. & Lang, B. F. Mitochondrial genomes of two demosponges provide insights into an early stage of animal evolution. Mol. Biol. Evol. 22, 1231-1239 (2005).
    • (2005) Mol. Biol. Evol , vol.22 , pp. 1231-1239
    • Lavrov, D.V.1    Forget, L.2    Kelly, M.3    Lang, B.F.4
  • 26
    • 0012341558 scopus 로고
    • The mapping of human chromosomes
    • Renwick, J. H. The mapping of human chromosomes. Annu. Rev. Genet. 5, 81-120 (1971).
    • (1971) Annu. Rev. Genet , vol.5 , pp. 81-120
    • Renwick, J.H.1
  • 27
    • 45749086679 scopus 로고    scopus 로고
    • The amphioxus genome and the evolution of the chordate karyotope
    • Putnam, N. H. et al. The amphioxus genome and the evolution of the chordate karyotope. Nature 453, 1064-1071 (2008).
    • (2008) Nature , vol.453 , pp. 1064-1071
    • Putnam, N.H.1
  • 28
    • 2542505487 scopus 로고    scopus 로고
    • The Trox-2 Hox/ParaHox gene of Trichoplax (Placozoa) marks an epithelial boundary
    • Jakob, W. et al. The Trox-2 Hox/ParaHox gene of Trichoplax (Placozoa) marks an epithelial boundary. Dev. Genes Evol. 214, 170-175 (2004).
    • (2004) Dev. Genes Evol , vol.214 , pp. 170-175
    • Jakob, W.1
  • 29
    • 20444394313 scopus 로고    scopus 로고
    • The Trichoplax PaxB gene: A putative Proto-PaxA/B/C gene predating the origin of nerve and sensory cells
    • Hadrys, T., DeSalle, R., Sagasser, S., Fischer, N. & Schierwater, B. The Trichoplax PaxB gene: a putative Proto-PaxA/B/C gene predating the origin of nerve and sensory cells. Mol. Biol. Evol. 22, 1569-1578 (2005).
    • (2005) Mol. Biol. Evol , vol.22 , pp. 1569-1578
    • Hadrys, T.1    DeSalle, R.2    Sagasser, S.3    Fischer, N.4    Schierwater, B.5
  • 31
    • 2942587376 scopus 로고    scopus 로고
    • Expression pattern of the homeobox gene Not in the basal metazoan Trichoplax adhaerens
    • Martinelli, C. & Spring, J. Expression pattern of the homeobox gene Not in the basal metazoan Trichoplax adhaerens. Gene Expr. Patterns 4, 443-447 (2004).
    • (2004) Gene Expr. Patterns , vol.4 , pp. 443-447
    • Martinelli, C.1    Spring, J.2
  • 32
    • 84945520889 scopus 로고    scopus 로고
    • The ancestral Antp gene repertoire: Insights from the placozoan genome
    • in the press
    • Schierwater, B. et al. The ancestral Antp gene repertoire: Insights from the placozoan genome. PLoS ONE (in the press).
    • PLoS ONE
    • Schierwater, B.1
  • 33
    • 0242636547 scopus 로고    scopus 로고
    • Distinct expression patterns of the two T-box homologues Brachyury and Tbx2/3 in the placozoan Trichoplax adhaerens
    • Martinelli, C. & Spring, J. Distinct expression patterns of the two T-box homologues Brachyury and Tbx2/3 in the placozoan Trichoplax adhaerens. Dev. Genes Evol. 213, 492-499 (2003).
    • (2003) Dev. Genes Evol , vol.213 , pp. 492-499
    • Martinelli, C.1    Spring, J.2
  • 34
    • 34548817012 scopus 로고    scopus 로고
    • Asymmetric developmental potential along the animal-vegetal axis in the anthozoan cnidarian, Nematostella vectensis, is mediated by Dishevelled
    • Lee, P. N., Kumburegama, S., Marlow, H. Q., Martindale, M. Q. & Wikramanayake, A. H. Asymmetric developmental potential along the animal-vegetal axis in the anthozoan cnidarian, Nematostella vectensis, is mediated by Dishevelled. Dev. Biol. 310, 169-186 (2007).
    • (2007) Dev. Biol , vol.310 , pp. 169-186
    • Lee, P.N.1    Kumburegama, S.2    Marlow, H.Q.3    Martindale, M.Q.4    Wikramanayake, A.H.5
  • 35
    • 38149124000 scopus 로고    scopus 로고
    • Wnt and TGF-β expression in the sponge Amphimedon queenslandica and the origin of metazoan embryonic patterning
    • Adamska, M. et al. Wnt and TGF-β expression in the sponge Amphimedon queenslandica and the origin of metazoan embryonic patterning. PLoS ONE 2, e1031 (2007).
    • (2007) PLoS ONE , vol.2
    • Adamska, M.1
  • 36
    • 33644748112 scopus 로고    scopus 로고
    • Dorso/ventral genes are asymmetrically expressed and involved in germ-layer demarcation during cnidarian gastrulation
    • Matus, D. Q., Thomsen, G. H. & Martindale, M. Q. Dorso/ventral genes are asymmetrically expressed and involved in germ-layer demarcation during cnidarian gastrulation. Curr. Biol. 16, 499-505 (2006).
    • (2006) Curr. Biol , vol.16 , pp. 499-505
    • Matus, D.Q.1    Thomsen, G.H.2    Martindale, M.Q.3
  • 37
    • 34848924648 scopus 로고    scopus 로고
    • The evolutionary origin of Hedgehog proteins
    • Adamska, M. et al. The evolutionary origin of Hedgehog proteins. Curr. Biol. 17, R836-R837 (2007).
    • (2007) Curr. Biol , vol.17
    • Adamska, M.1
  • 38
    • 33747606753 scopus 로고    scopus 로고
    • Early evolution of animal cell signaling and adhesion genes
    • Nichols, S. A., Dirks, W., Pearse, J. S. & King, N. Early evolution of animal cell signaling and adhesion genes. Proc. Natl Acad. Sci. USA 103, 12451-12456 (2006).
    • (2006) Proc. Natl Acad. Sci. USA , vol.103 , pp. 12451-12456
    • Nichols, S.A.1    Dirks, W.2    Pearse, J.S.3    King, N.4
  • 39
    • 0030348172 scopus 로고    scopus 로고
    • Characterization of the receptor protein-tyrosine kinase gene from the marine sponge Geodia cydonium
    • Muller, W. E. & Schacke, H. Characterization of the receptor protein-tyrosine kinase gene from the marine sponge Geodia cydonium. Prog. Mol. Subcell. Biol. 17, 183-208 (1996).
    • (1996) Prog. Mol. Subcell. Biol , vol.17 , pp. 183-208
    • Muller, W.E.1    Schacke, H.2
  • 40
    • 38249005533 scopus 로고
    • Trichoplax adhaerens (phylum Placozoa) has cells that react with antibodies against the neuropeptide RFamide
    • Schuchert, P. Trichoplax adhaerens (phylum Placozoa) has cells that react with antibodies against the neuropeptide RFamide. Acta Zool. 74, 115-117 (1993).
    • (1993) Acta Zool , vol.74 , pp. 115-117
    • Schuchert, P.1
  • 41
    • 0027365744 scopus 로고
    • Evolutionary conservation of synaptosome-associated protein 25 kDa (SNAP-25) shown by Drosophila and Torpedo cDNA clones
    • Risinger, C. et al. Evolutionary conservation of synaptosome-associated protein 25 kDa (SNAP-25) shown by Drosophila and Torpedo cDNA clones. J. Biol. Chem. 268, 24408-24414 (1993).
    • (1993) J. Biol. Chem , vol.268 , pp. 24408-24414
    • Risinger, C.1
  • 42
    • 35748976340 scopus 로고    scopus 로고
    • A post-synaptic scaffold at the origin of the animal kingdom
    • Sakarya, O. et al. A post-synaptic scaffold at the origin of the animal kingdom. PLoS ONE 2, e506 (2007).
    • (2007) PLoS ONE , vol.2
    • Sakarya, O.1
  • 43
    • 12544259704 scopus 로고    scopus 로고
    • A phylogenomic inventory of meiotic genes; evidence for sex in Giardia and an early eukaryotic origin of meiosis
    • Ramesh, M. A., Malik, S. B. & Logsdon, J. M. Jr. A phylogenomic inventory of meiotic genes; evidence for sex in Giardia and an early eukaryotic origin of meiosis. Curr. Biol. 15, 185-191 (2005).
    • (2005) Curr. Biol , vol.15 , pp. 185-191
    • Ramesh, M.A.1    Malik, S.B.2    Logsdon Jr., J.M.3
  • 44
    • 0000316734 scopus 로고
    • Bemerkungen zur Gastraeatheorie.
    • Bütschli, O. Bemerkungen zur Gastraeatheorie. Morph. Jahrb. 9, 415-427 (1884).
    • (1884) Morph. Jahrb , vol.9 , pp. 415-427
    • Bütschli, O.1
  • 45
    • 0036057306 scopus 로고    scopus 로고
    • The evolution of the Placozoa: A new morphological model
    • Syed, T. & Schierwater, B. The evolution of the Placozoa: a new morphological model. Senckenbergiana Lethaea 82, 259-270 (2002).
    • (2002) Senckenbergiana Lethaea , vol.82 , pp. 259-270
    • Syed, T.1    Schierwater, B.2
  • 46
    • 0036342146 scopus 로고    scopus 로고
    • The last common bilaterian ancestor
    • Erwin, D. H. & Davidson, E. H. The last common bilaterian ancestor. Development 129, 3021-3032 (2002).
    • (2002) Development , vol.129 , pp. 3021-3032
    • Erwin, D.H.1    Davidson, E.H.2
  • 47
    • 0037162885 scopus 로고    scopus 로고
    • Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
    • Aparicio, S. et al. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 297, 1301-1310 (2002).
    • (2002) Science , vol.297 , pp. 1301-1310
    • Aparicio, S.1
  • 48
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. & Gibson, T. J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680 (1994).
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 49
    • 13244255415 scopus 로고    scopus 로고
    • MUSCLE: A multiple sequence alignment method with reduced time and space complexity
    • Edgar, R. C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5, 113 (2004).
    • (2004) BMC Bioinformatics , vol.5 , pp. 113
    • Edgar, R.C.1
  • 50
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F. & Huelsenbeck, J. P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574 (2003).
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 51
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S. & Gascuel, O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704 (2003).
    • (2003) Syst. Biol , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 52
    • 84945520303 scopus 로고    scopus 로고
    • Swofford, D. L. PAUP*. Phylogenetic Analysis Using Parsimony *and Other Methods, version 4.0, Sinauer Associates, 1999
    • Swofford, D. L. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), version 4.0. (Sinauer Associates, 1999).
  • 53
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt, H. A., Strimmer, K., Vingron, M. & von Haeseler, A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18, 502-504 (2002).
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 54
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: For assessing the confidence of phylogenetic tree selection
    • Shimodaira, H. & Hasegawa, M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17, 1246-1247 (2001).
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2
  • 55
    • 0141742293 scopus 로고    scopus 로고
    • PANTHER: A library of protein families and subfamilies indexed by function
    • Thomas, P. D. et al. PANTHER: a library of protein families and subfamilies indexed by function. Genome Res. 13, 2129-2141 (2003).
    • (2003) Genome Res , vol.13 , pp. 2129-2141
    • Thomas, P.D.1
  • 56
    • 9144257886 scopus 로고    scopus 로고
    • The Pfam protein families database
    • Bateman, A. et al. The Pfam protein families database. Nucleic Acids Res. 32, D138-D141 (2004).
    • (2004) Nucleic Acids Res , vol.32
    • Bateman, A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.