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Volumn 10, Issue 9, 2009, Pages

Gene networks in Drosophila melanogaster: Integrating experimental data to predict gene function

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; BIOINFORMATICS; DATA MINING; DNA MICROARRAY; DROSOPHILA MELANOGASTER; GENE CLUSTER; GENE EXPRESSION; GENE FUNCTION; GENE INTERACTION; GENE SEQUENCE; INFORMATION PROCESSING; INSECT GENETICS; NONHUMAN; PREDICTION; PROTEIN PROTEIN INTERACTION; ALGORITHM; ANIMAL; BIOLOGY; CLUSTER ANALYSIS; GENE EXPRESSION PROFILING; GENE REGULATORY NETWORK; GENETIC DATABASE; GENETICS; GENOMICS; METHODOLOGY; PROTEIN ANALYSIS; PROTEIN DATABASE; STATISTICS; SYSTEM ANALYSIS;

EID: 76249110159     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2009-10-9-r97     Document Type: Article
Times cited : (44)

References (114)
  • 1
    • 84984996500 scopus 로고    scopus 로고
    • The Gene Ontology project in 2008.
    • 2238979, 17984083, 10.1093/nar/gkm883, The Gene Ontology Consortium
    • The Gene Ontology Consortium The Gene Ontology project in 2008. Nucleic Acids Res 2008, 36:D440-444. 2238979, 17984083, 10.1093/nar/gkm883, The Gene Ontology Consortium.
    • (2008) Nucleic Acids Res , vol.36
  • 2
    • 34548573170 scopus 로고    scopus 로고
    • Why are there still over 1000 uncharacterized yeast genes?
    • 17435240, 10.1534/genetics.107.074468, 1893027
    • Pena-Castillo L, Hughes TR. Why are there still over 1000 uncharacterized yeast genes?. Genetics 2007, 176:7-14. 17435240, 10.1534/genetics.107.074468, 1893027.
    • (2007) Genetics , vol.176 , pp. 7-14
    • Pena-Castillo, L.1    Hughes, T.R.2
  • 3
    • 20444450051 scopus 로고    scopus 로고
    • Predicting protein function from sequence and structural data.
    • 10.1016/j.sbi.2005.04.003, 15963890
    • Watson J, Laskowski R, Thornton J. Predicting protein function from sequence and structural data. Curr Opin Struct Biol 2005, 15:275-284. 10.1016/j.sbi.2005.04.003, 15963890.
    • (2005) Curr Opin Struct Biol , vol.15 , pp. 275-284
    • Watson, J.1    Laskowski, R.2    Thornton, J.3
  • 4
    • 0346731042 scopus 로고    scopus 로고
    • Automatic prediction of protein function.
    • 10.1007/s00018-003-3114-8, 14685688
    • Rost B, Liu J, Nair R, Wrzeszczynski K, Ofran Y. Automatic prediction of protein function. Cell Mol Life Sci 2003, 60:2637-2650. 10.1007/s00018-003-3114-8, 14685688.
    • (2003) Cell Mol Life Sci , vol.60 , pp. 2637-2650
    • Rost, B.1    Liu, J.2    Nair, R.3    Wrzeszczynski, K.4    Ofran, Y.5
  • 5
    • 0038492417 scopus 로고    scopus 로고
    • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
    • 166232, 12826619, 10.1073/pnas.0832373100
    • Troyanskaya OG, Dolinski K, Owen AB, Altman RB, Botstein D. A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae). Proc Natl Acad Sci USA 2003, 100:8348-8353. 166232, 12826619, 10.1073/pnas.0832373100.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 8348-8353
    • Troyanskaya, O.G.1    Dolinski, K.2    Owen, A.B.3    Altman, R.B.4    Botstein, D.5
  • 6
    • 0033523854 scopus 로고    scopus 로고
    • A combined algorithm for genome-wide prediction of protein function.
    • 10.1038/47048, 10573421
    • Marcotte E, Pellegrini M, Thompson M, Yeates T, Eisenberg D. A combined algorithm for genome-wide prediction of protein function. Nature 1999, 402:83-86. 10.1038/47048, 10573421.
    • (1999) Nature , vol.402 , pp. 83-86
    • Marcotte, E.1    Pellegrini, M.2    Thompson, M.3    Yeates, T.4    Eisenberg, D.5
  • 7
    • 55449131589 scopus 로고    scopus 로고
    • Probabilistic protein function prediction from heterogeneous genome-wide data.
    • 1828618, 17396164, 10.1371/journal.pone.0000337
    • Nariai N, Kolaczyk ED, Kasif S. Probabilistic protein function prediction from heterogeneous genome-wide data. PLoS ONE 2007, 2:e337. 1828618, 17396164, 10.1371/journal.pone.0000337.
    • (2007) PLoS ONE , vol.2
    • Nariai, N.1    Kolaczyk, E.D.2    Kasif, S.3
  • 9
    • 34247623628 scopus 로고    scopus 로고
    • Getting connected: analysis and principles of biological networks.
    • 10.1101/gad.1528707, 17473168
    • Zhu X, Gerstein M, Snyder M. Getting connected: analysis and principles of biological networks. Genes Dev 2007, 21:1010-1024. 10.1101/gad.1528707, 17473168.
    • (2007) Genes Dev , vol.21 , pp. 1010-1024
    • Zhu, X.1    Gerstein, M.2    Snyder, M.3
  • 10
    • 2642566695 scopus 로고    scopus 로고
    • A probabalistic view of gene function.
    • 10.1038/ng1370, 15167932
    • Fraser AG, Marcotte EM. A probabalistic view of gene function. Nat Genet 2004, 36:559-564. 10.1038/ng1370, 15167932.
    • (2004) Nat Genet , vol.36 , pp. 559-564
    • Fraser, A.G.1    Marcotte, E.M.2
  • 11
    • 33644527950 scopus 로고    scopus 로고
    • The model organism as a system: integrating 'omics' datasets.
    • 10.1038/nrm1857, 16496022
    • Joyce A, Palsson B. The model organism as a system: integrating 'omics' datasets. Nat Rev Mol Cell Biol 2006, 7:198-210. 10.1038/nrm1857, 16496022.
    • (2006) Nat Rev Mol Cell Biol , vol.7 , pp. 198-210
    • Joyce, A.1    Palsson, B.2
  • 12
    • 9444239213 scopus 로고    scopus 로고
    • A probabilistic functional network of yeast genes.
    • 10.1126/science.1099511, 15567862
    • Lee I, Date SV, Adai AT, Marcotte EM. A probabilistic functional network of yeast genes. Science 2004, 306:1555-1558. 10.1126/science.1099511, 15567862.
    • (2004) Science , vol.306 , pp. 1555-1558
    • Lee, I.1    Date, S.V.2    Adai, A.T.3    Marcotte, E.M.4
  • 13
    • 2342648924 scopus 로고    scopus 로고
    • Integrating high-throughput and computational data elucidates bacterial networks.
    • 10.1038/nature02456, 15129285
    • Covert M, Knight E, Reed J, Herrgard M, Palsson B. Integrating high-throughput and computational data elucidates bacterial networks. Nature 2004, 429:92-96. 10.1038/nature02456, 15129285.
    • (2004) Nature , vol.429 , pp. 92-96
    • Covert, M.1    Knight, E.2    Reed, J.3    Herrgard, M.4    Palsson, B.5
  • 14
    • 33750704942 scopus 로고    scopus 로고
    • Integration of omics data: how well does it work for bacteria?
    • 10.1111/j.1365-2958.2006.05453.x, 17040488
    • DeKeersmaecker S, Thijs I, Vanderleyden J, Marchal K. Integration of omics data: how well does it work for bacteria?. Mol Microbiol 2006, 62:1239-1250. 10.1111/j.1365-2958.2006.05453.x, 17040488.
    • (2006) Mol Microbiol , vol.62 , pp. 1239-1250
    • DeKeersmaecker, S.1    Thijs, I.2    Vanderleyden, J.3    Marchal, K.4
  • 16
    • 38649138295 scopus 로고    scopus 로고
    • A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans.
    • 10.1038/ng.2007.70, 18223650
    • Lee I, Lehner B, Crombie C, Wong W, Fraser A, Marcotte E. A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans. Nat Genet 2008, 40:181-188. 10.1038/ng.2007.70, 18223650.
    • (2008) Nat Genet , vol.40 , pp. 181-188
    • Lee, I.1    Lehner, B.2    Crombie, C.3    Wong, W.4    Fraser, A.5    Marcotte, E.6
  • 19
    • 33646884801 scopus 로고    scopus 로고
    • Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes.
    • 1474084, 16685651, 10.1086/504300
    • Franke L, van Bakel H, Fokkens L, de Jong E, Egmont-Petersen M, Wijmenga C. Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. Am J Hum Genet 2006, 78:1011-1125. 1474084, 16685651, 10.1086/504300.
    • (2006) Am J Hum Genet , vol.78 , pp. 1011-1125
    • Franke, L.1    van Bakel, H.2    Fokkens, L.3    de Jong, E.4    Egmont-Petersen, M.5    Wijmenga, C.6
  • 22
    • 0742304254 scopus 로고    scopus 로고
    • Prediction of protein function using protein-protein interaction data.
    • 10.1089/106652703322756168, 14980019
    • Deng M, Zhang K, Mehta S, Chen T, Shun F. Prediction of protein function using protein-protein interaction data. J Comput Biol 2003, 10:947-960. 10.1089/106652703322756168, 14980019.
    • (2003) J Comput Biol , vol.10 , pp. 947-960
    • Deng, M.1    Zhang, K.2    Mehta, S.3    Chen, T.4    Shun, F.5
  • 23
    • 13844271482 scopus 로고    scopus 로고
    • Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae.
    • 10.1089/omi.2004.8.322, 15703479
    • Joshi T, Chen Y, Becker J, Alexandrov N, Xu D. Genome-scale gene function prediction using multiple sources of high-throughput data in yeast Saccharomyces cerevisiae. OMICS 2004, 8:322-333. 10.1089/omi.2004.8.322, 15703479.
    • (2004) OMICS , vol.8 , pp. 322-333
    • Joshi, T.1    Chen, Y.2    Becker, J.3    Alexandrov, N.4    Xu, D.5
  • 25
    • 3242677236 scopus 로고    scopus 로고
    • Comparative genomics for reliable protein-function prediction from genomic data.
    • 10.1016/j.tig.2004.06.003, 15262404
    • Huynen M, Snel B, vanNoort V. Comparative genomics for reliable protein-function prediction from genomic data. Trends Genet 2004, 20:340-344. 10.1016/j.tig.2004.06.003, 15262404.
    • (2004) Trends Genet , vol.20 , pp. 340-344
    • Huynen, M.1    Snel, B.2    vanNoort, V.3
  • 28
    • 41549138299 scopus 로고    scopus 로고
    • An improved, bias-reduced probabilistic functional gene network of Baker's yeast, Saccharomyces cerevisiae.
    • 1991590, 17912365, 10.1371/journal.pone.0000988
    • Lee I, Li Z, Marcotte EM. An improved, bias-reduced probabilistic functional gene network of Baker's yeast, Saccharomyces cerevisiae. PLoS ONE 2007, 2:e988. 1991590, 17912365, 10.1371/journal.pone.0000988.
    • (2007) PLoS ONE , vol.2
    • Lee, I.1    Li, Z.2    Marcotte, E.M.3
  • 29
    • 17444416487 scopus 로고    scopus 로고
    • Predicting gene function through systematic analysis and quality assessment of high-throughput data.
    • 10.1093/bioinformatics/bti103, 15531615
    • Kemmeren P, Kockelkorn T, Bijma T, Donders R, Holstege F. Predicting gene function through systematic analysis and quality assessment of high-throughput data. Bioinformatics 2005, 21:1644-1652. 10.1093/bioinformatics/bti103, 15531615.
    • (2005) Bioinformatics , vol.21 , pp. 1644-1652
    • Kemmeren, P.1    Kockelkorn, T.2    Bijma, T.3    Donders, R.4    Holstege, F.5
  • 31
    • 47549098627 scopus 로고    scopus 로고
    • Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy.
    • 2447539, 18613949, 10.1186/gb-2008-9-s1-s5
    • Kim W, Krumpelman C, Marcotte E. Inferring mouse gene functions from genomic-scale data using a combined functional network/classification strategy. Genome Biol 2008, 9:S5. 2447539, 18613949, 10.1186/gb-2008-9-s1-s5.
    • (2008) Genome Biol , vol.9
    • Kim, W.1    Krumpelman, C.2    Marcotte, E.3
  • 32
    • 52949087576 scopus 로고    scopus 로고
    • A genomewide functional network for the laboratory mouse.
    • 2527685, 18818725, 10.1371/journal.pcbi.1000165
    • Guan Y, Myers C, Lu R, Lemischka I, Bult C, Troyanskaya O. A genomewide functional network for the laboratory mouse. PLoS Comput Biol 2008, 4:e1000165. 2527685, 18818725, 10.1371/journal.pcbi.1000165.
    • (2008) PLoS Comput Biol , vol.4
    • Guan, Y.1    Myers, C.2    Lu, R.3    Lemischka, I.4    Bult, C.5    Troyanskaya, O.6
  • 33
    • 14544279308 scopus 로고    scopus 로고
    • Research resources for Drosophila: The expanding universe.
    • 10.1038/nrg1554, 15738962
    • Matthews K, Kaufman T, Gelbart W. Research resources for Drosophila: The expanding universe. Nat Rev Genet 2005, 6:179-193. 10.1038/nrg1554, 15738962.
    • (2005) Nat Rev Genet , vol.6 , pp. 179-193
    • Matthews, K.1    Kaufman, T.2    Gelbart, W.3
  • 34
    • 76249121102 scopus 로고    scopus 로고
    • Data pushing: a fly-centric guide to bioinformatics tools.
    • [Epub ahead of print], 18849648
    • Costello J, Cash A, Dalkilic M, Andrews J. Data pushing: a fly-centric guide to bioinformatics tools. Fly (Austin) 2008, 2. [Epub ahead of print], 18849648.
    • (2008) Fly (Austin) , vol.2
    • Costello, J.1    Cash, A.2    Dalkilic, M.3    Andrews, J.4
  • 37
    • 0003328368 scopus 로고    scopus 로고
    • Evidence for large domains of similarly expressed genes in the Drosophila genome.
    • 117248, 12144710, 10.1186/1475-4924-1-5
    • Spellman PT, Rubin GM. Evidence for large domains of similarly expressed genes in the Drosophila genome. J Biol 2002, 1:5. 117248, 12144710, 10.1186/1475-4924-1-5.
    • (2002) J Biol , vol.1 , pp. 5
    • Spellman, P.T.1    Rubin, G.M.2
  • 38
    • 34547586344 scopus 로고    scopus 로고
    • Prediction of gene expression in embryonic structures of Drosophila melanogaster.
    • 1924873, 17658945, 10.1371/journal.pcbi.0030144
    • Samsonova AA, Niranjan M, Russell S, Brazma A. Prediction of gene expression in embryonic structures of Drosophila melanogaster. PLoS Comput Biol 2007, 3:e144. 1924873, 17658945, 10.1371/journal.pcbi.0030144.
    • (2007) PLoS Comput Biol , vol.3
    • Samsonova, A.A.1    Niranjan, M.2    Russell, S.3    Brazma, A.4
  • 39
    • 0034708613 scopus 로고    scopus 로고
    • A brief history of Drosophila 's contribution to genome research.
    • 10.1126/science.287.5461.2216, 10731135
    • Rubin GM, Lewis EB. A brief history of Drosophila 's contribution to genome research. Science 2000, 287:2216-2218. 10.1126/science.287.5461.2216, 10731135.
    • (2000) Science , vol.287 , pp. 2216-2218
    • Rubin, G.M.1    Lewis, E.B.2
  • 45
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE(ENCyclopedia Of DNA Elements).
    • 10.1126/science.1105136, 15499007, The ENCODE Project Consortium
    • The ENCODE Project Consortium The ENCODE(ENCyclopedia Of DNA Elements). Science 2004, 306:636-640. 10.1126/science.1105136, 15499007, The ENCODE Project Consortium.
    • (2004) Science , vol.306 , pp. 636-640
  • 46
    • 76249113347 scopus 로고    scopus 로고
    • FlyBase
    • FlyBase. , http://www.flybase.net
  • 47
    • 1542271409 scopus 로고    scopus 로고
    • Predicting protein function from protein/protein interaction data: a probabilistic approach.
    • 10.1093/bioinformatics/btg1026, 12855458
    • Letovsky S, Kasif S. Predicting protein function from protein/protein interaction data: a probabilistic approach. Bioinformatics 2003, 19:i197-i204. 10.1093/bioinformatics/btg1026, 12855458.
    • (2003) Bioinformatics , vol.19
    • Letovsky, S.1    Kasif, S.2
  • 48
    • 76249132301 scopus 로고    scopus 로고
    • Supplemental
    • Supplemental. , http://www.indigene.org
  • 50
    • 0036088133 scopus 로고    scopus 로고
    • DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions.
    • 99070, 11752321, 10.1093/nar/30.1.303
    • Xenarios I, Salwinski L, Duan XJ, Higney P, Kim SM, Eisenberg D. DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions. Nucleic Acids Res 2002, 30:303-305. 99070, 11752321, 10.1093/nar/30.1.303.
    • (2002) Nucleic Acids Res , vol.30 , pp. 303-305
    • Xenarios, I.1    Salwinski, L.2    Duan, X.J.3    Higney, P.4    Kim, S.M.5    Eisenberg, D.6
  • 55
    • 76249128502 scopus 로고    scopus 로고
    • Supplemental Figures and Tables
    • Supplemental Figures and Tables. , http://www.indigene.org/downloads/Costello_Suppl_Data.pdf
  • 56
    • 84870438764 scopus 로고    scopus 로고
    • Gene Ontology
    • Gene Ontology. , http://www.geneontology.org/
  • 57
    • 0037013856 scopus 로고    scopus 로고
    • The Toll and Imd pathways are the major regulators of the immune response in Drosophila.
    • 126042, 12032070, 10.1093/emboj/21.11.2568
    • De Gregorio E, Spellman PT, Tzou P, Rubin GM, Lemaitre B. The Toll and Imd pathways are the major regulators of the immune response in Drosophila. EMBO J 2002, 21:2568-2579. 126042, 12032070, 10.1093/emboj/21.11.2568.
    • (2002) EMBO J , vol.21 , pp. 2568-2579
    • De Gregorio, E.1    Spellman, P.T.2    Tzou, P.3    Rubin, G.M.4    Lemaitre, B.5
  • 59
    • 34548101343 scopus 로고    scopus 로고
    • Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach.
    • 17672901, 10.1186/1471-2202-8-59, 1950096
    • Magalhaes TR, Palmer J, Tomancak P, Pollard KS. Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach. BMC Neurosci 2007, 8:59. 17672901, 10.1186/1471-2202-8-59, 1950096.
    • (2007) BMC Neurosci , vol.8 , pp. 59
    • Magalhaes, T.R.1    Palmer, J.2    Tomancak, P.3    Pollard, K.S.4
  • 60
    • 0037482108 scopus 로고    scopus 로고
    • Assessment of the reliability of protein-protein interactions and protein function prediction.
    • Deng M, Sun F, Chen T. Assessment of the reliability of protein-protein interactions and protein function prediction. Pac Symp Biocomput 2003, 140-151.
    • (2003) Pac Symp Biocomput , pp. 140-151
    • Deng, M.1    Sun, F.2    Chen, T.3
  • 62
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: Kyoto Encyclopedia of Genes and Genomes.
    • 102409, 10592173, 10.1093/nar/28.1.27
    • Kanehisa M, Goto S. KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 2000, 28:27-30. 102409, 10592173, 10.1093/nar/28.1.27.
    • (2000) Nucleic Acids Res , vol.28 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 63
    • 76249112813 scopus 로고    scopus 로고
    • Integrated Drosophila Gene Network with 20 K Edges
    • Integrated Drosophila Gene Network with 20 K Edges. , http://www.indigene.org/downloads/Costello_20K_network.cys
  • 64
    • 76249099187 scopus 로고    scopus 로고
    • Integrated Drosophila Gene Network with 200 K Edges
    • Integrated Drosophila Gene Network with 200 K Edges. , http://www.indigene.org/downloads/Costello_200K_network.cys
  • 65
    • 76249093290 scopus 로고    scopus 로고
    • Full Set of Integrated Drosophila Data
    • Full Set of Integrated Drosophila Data. , http://www.indigene.org/downloads/Costello_All_Data.tar.gz
  • 66
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks.
    • 403769, 14597658, 10.1101/gr.1239303
    • Shannon P, Markiel A, Ozier O, Baliga N, Wang J, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13:2498-2504. 403769, 14597658, 10.1101/gr.1239303.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.4    Wang, J.5    Ramage, D.6    Amin, N.7    Schwikowski, B.8    Ideker, T.9
  • 67
    • 2942552459 scopus 로고    scopus 로고
    • An automated method for finding molecular complexes in large protein interaction networks.
    • 149346, 12525261, 10.1186/1471-2105-4-2
    • Bader G, Hogue C. An automated method for finding molecular complexes in large protein interaction networks. BMC Bioinformatics 2003, 4:2. 149346, 12525261, 10.1186/1471-2105-4-2.
    • (2003) BMC Bioinformatics , vol.4 , pp. 2
    • Bader, G.1    Hogue, C.2
  • 68
    • 33750948614 scopus 로고    scopus 로고
    • Mutation of TweedleD, a member of an unconventional cuticle protein family, alters body shape in Drosophila.
    • 1636534, 17075064, 10.1073/pnas.0607616103
    • Guan X, Middlebrooks B, Alexander S, Wasserman S. Mutation of TweedleD, a member of an unconventional cuticle protein family, alters body shape in Drosophila. Proc Natl Acad Sci USA 2006, 103:16794-16799. 1636534, 17075064, 10.1073/pnas.0607616103.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 16794-16799
    • Guan, X.1    Middlebrooks, B.2    Alexander, S.3    Wasserman, S.4
  • 69
    • 34548100280 scopus 로고    scopus 로고
    • Characterization of RACK1 function in Drosophila development.
    • 17584887, 10.1002/dvdy.21217
    • Kadrmas J, Smith M, Pronovost S, Beckerle M. Characterization of RACK1 function in Drosophila development. Dev Dyn 2007, 236:2207-2215. 17584887, 10.1002/dvdy.21217.
    • (2007) Dev Dyn , vol.236 , pp. 2207-2215
    • Kadrmas, J.1    Smith, M.2    Pronovost, S.3    Beckerle, M.4
  • 70
    • 1542782551 scopus 로고    scopus 로고
    • Cpc2/RACK1 is a ribosome-associated protein that promotes efficient translation in Schizosaccharomyces pombe.
    • 10.1074/jbc.M303968200, 12972434
    • Shor B, Calaycay J, Rushbrook J, McLeod M. Cpc2/RACK1 is a ribosome-associated protein that promotes efficient translation in Schizosaccharomyces pombe. J Biol Chem 2003, 278:49119-49128. 10.1074/jbc.M303968200, 12972434.
    • (2003) J Biol Chem , vol.278 , pp. 49119-49128
    • Shor, B.1    Calaycay, J.2    Rushbrook, J.3    McLeod, M.4
  • 71
    • 4444351205 scopus 로고    scopus 로고
    • Yeast Asc1p and mammalian RACK1 are functionally orthologous core 40S ribosomal proteins that repress gene expression.
    • 515043, 15340087, 10.1128/MCB.24.18.8276-8287.2004
    • Gerbasi V, Weaver C, Hill S, Friedman D, Link A. Yeast Asc1p and mammalian RACK1 are functionally orthologous core 40S ribosomal proteins that repress gene expression. Mol Cell Biol 2004, 24:8276-8287. 515043, 15340087, 10.1128/MCB.24.18.8276-8287.2004.
    • (2004) Mol Cell Biol , vol.24 , pp. 8276-8287
    • Gerbasi, V.1    Weaver, C.2    Hill, S.3    Friedman, D.4    Link, A.5
  • 72
    • 4744350970 scopus 로고    scopus 로고
    • Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM.
    • 10.1038/nsmb822, 15334071
    • Sengupta J, Nilsson J, Gursky R, Spahn C, Nissen P, Frank J. Identification of the versatile scaffold protein RACK1 on the eukaryotic ribosome by cryo-EM. Nat Struct Mol Biol 2004, 11:957-962. 10.1038/nsmb822, 15334071.
    • (2004) Nat Struct Mol Biol , vol.11 , pp. 957-962
    • Sengupta, J.1    Nilsson, J.2    Gursky, R.3    Spahn, C.4    Nissen, P.5    Frank, J.6
  • 73
    • 34447294237 scopus 로고    scopus 로고
    • A new method to measure the semantic similarity of GO terms.
    • 10.1093/bioinformatics/btm087, 17344234
    • Wang JZ, Du Z, Payattakool R, Yu PS, Chen CF. A new method to measure the semantic similarity of GO terms. Bioinformatics 2007, 23:1274-1281. 10.1093/bioinformatics/btm087, 17344234.
    • (2007) Bioinformatics , vol.23 , pp. 1274-1281
    • Wang, J.Z.1    Du, Z.2    Payattakool, R.3    Yu, P.S.4    Chen, C.F.5
  • 74
    • 33846638827 scopus 로고    scopus 로고
    • Incorporation of Drosophila CID/CENP-A and CENP-C into centromeres during early embryonic anaphase.
    • 10.1016/j.cub.2006.11.051, 17222555
    • Schuh M, Lehner S, Heidmann S. Incorporation of Drosophila CID/CENP-A and CENP-C into centromeres during early embryonic anaphase. Curr Biol 2007, 17:237-243. 10.1016/j.cub.2006.11.051, 17222555.
    • (2007) Curr Biol , vol.17 , pp. 237-243
    • Schuh, M.1    Lehner, S.2    Heidmann, S.3
  • 75
    • 0000174388 scopus 로고
    • The mutant crossveinless in Drosophila melanogaster.
    • 1084670, 16576553, 10.1073/pnas.6.11.660
    • Bridges C. The mutant crossveinless in Drosophila melanogaster. Proc Natl Acad Sci USA 1920, 6:660-663. 1084670, 16576553, 10.1073/pnas.6.11.660.
    • (1920) Proc Natl Acad Sci USA , vol.6 , pp. 660-663
    • Bridges, C.1
  • 76
    • 20344377373 scopus 로고    scopus 로고
    • The crossveinless gene encodes a new member of the Twisted gastrulation family of BMP-binding proteins which, with Short gastrulation, promotes BMP signaling in the crossveins of the Drosophila wing.
    • 10.1016/j.ydbio.2005.02.029, 15936330
    • Shimmi O, Ralston A, Blair S, O'Connor M. The crossveinless gene encodes a new member of the Twisted gastrulation family of BMP-binding proteins which, with Short gastrulation, promotes BMP signaling in the crossveins of the Drosophila wing. Dev Biol 2005, 282:70-83. 10.1016/j.ydbio.2005.02.029, 15936330.
    • (2005) Dev Biol , vol.282 , pp. 70-83
    • Shimmi, O.1    Ralston, A.2    Blair, S.3    O'Connor, M.4
  • 77
    • 29244448340 scopus 로고    scopus 로고
    • Microarray data analysis: from disarray to consolidation and consensus.
    • 10.1038/nrg1749, 16369572
    • Allison D, Cui X, Page G, Sabripour M. Microarray data analysis: from disarray to consolidation and consensus. Nat Rev Genet 2006, 7:55-65. 10.1038/nrg1749, 16369572.
    • (2006) Nat Rev Genet , vol.7 , pp. 55-65
    • Allison, D.1    Cui, X.2    Page, G.3    Sabripour, M.4
  • 78
    • 58549112996 scopus 로고    scopus 로고
    • Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists.
    • 2615629, 19033363, 10.1093/nar/gkn923
    • Huang D, Sherman B, Lempicki R. Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 2009, 37:1-13. 2615629, 19033363, 10.1093/nar/gkn923.
    • (2009) Nucleic Acids Res , vol.37 , pp. 1-13
    • Huang, D.1    Sherman, B.2    Lempicki, R.3
  • 79
    • 37449029143 scopus 로고    scopus 로고
    • Nutritional control of protein biosynthetic capacity by insulin via Myc in Drosophila.
    • 10.1016/j.cmet.2007.11.010, 18177722
    • Teleman A, Hietakangas V, Sayadian A, Cohen S. Nutritional control of protein biosynthetic capacity by insulin via Myc in Drosophila. Cell Metab 2008, 7:21-32. 10.1016/j.cmet.2007.11.010, 18177722.
    • (2008) Cell Metab , vol.7 , pp. 21-32
    • Teleman, A.1    Hietakangas, V.2    Sayadian, A.3    Cohen, S.4
  • 80
    • 21644470638 scopus 로고    scopus 로고
    • CrebA regulates secretory activity in the Drosophila salivary gland and epidermis.
    • 15901661, 10.1242/dev.01863
    • Abrams EW, Andrew DJ. CrebA regulates secretory activity in the Drosophila salivary gland and epidermis. Development 2005, 132:2743-2758. 15901661, 10.1242/dev.01863.
    • (2005) Development , vol.132 , pp. 2743-2758
    • Abrams, E.W.1    Andrew, D.J.2
  • 83
    • 0037432528 scopus 로고    scopus 로고
    • How reliable are experimental protein-protein interaction data?
    • 12662919, 10.1016/S0022-2836(03)00239-0
    • Sprinzak E, Sattath S, Margalit H. How reliable are experimental protein-protein interaction data?. J Mol Biol 2003, 327:9919-9923. 12662919, 10.1016/S0022-2836(03)00239-0.
    • (2003) J Mol Biol , vol.327 , pp. 9919-9923
    • Sprinzak, E.1    Sattath, S.2    Margalit, H.3
  • 84
    • 34848918150 scopus 로고    scopus 로고
    • Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function.
    • 10.1016/j.cell.2007.08.003, 17923096
    • Lècuyer E, Yoshida H, Parthasarathy N, Alm C, Babak T, Cerovina T, Hughes T, Tomancak P, Krause H. Global analysis of mRNA localization reveals a prominent role in organizing cellular architecture and function. Cell 2007, 131:174-187. 10.1016/j.cell.2007.08.003, 17923096.
    • (2007) Cell , vol.131 , pp. 174-187
    • Lècuyer, E.1    Yoshida, H.2    Parthasarathy, N.3    Alm, C.4    Babak, T.5    Cerovina, T.6    Hughes, T.7    Tomancak, P.8    Krause, H.9
  • 85
    • 38549105493 scopus 로고    scopus 로고
    • REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila.
    • 2238825, 18039705, 10.1093/nar/gkm876
    • Halfon M, Gallo S, Bergman C. REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila. Nucleic Acids Res 2008, 36:D594-D598. 2238825, 18039705, 10.1093/nar/gkm876.
    • (2008) Nucleic Acids Res , vol.36
    • Halfon, M.1    Gallo, S.2    Bergman, C.3
  • 86
    • 17444402501 scopus 로고    scopus 로고
    • Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.
    • 10.1093/bioinformatics/bti173, 15572468
    • Bergman CM, Carlson JW, Celniker SE. Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster. Bioinformatics 2005, 21:1747-1749. 10.1093/bioinformatics/bti173, 15572468.
    • (2005) Bioinformatics , vol.21 , pp. 1747-1749
    • Bergman, C.M.1    Carlson, J.W.2    Celniker, S.E.3
  • 88
    • 0033832615 scopus 로고    scopus 로고
    • Predicting protein function by genomic context: quantitative evaluation and qualitative inferences.
    • 310926, 10958638, 10.1101/gr.10.8.1204
    • Huynen M, Snel B, Lathe W, Bork P. Predicting protein function by genomic context: quantitative evaluation and qualitative inferences. Genome Res 2000, 10:1204-1210. 310926, 10958638, 10.1101/gr.10.8.1204.
    • (2000) Genome Res , vol.10 , pp. 1204-1210
    • Huynen, M.1    Snel, B.2    Lathe, W.3    Bork, P.4
  • 89
    • 0033551248 scopus 로고    scopus 로고
    • Assigning protein functions by comparative genome analysis: protein phylogenetic profiles.
    • 16324, 10200254, 10.1073/pnas.96.8.4285
    • Pellegrini M, Marcotte E, Thompson M, Eisenberg D, Yeates T. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc Natl Acad Sci USA 1999, 96:4285-4288. 16324, 10200254, 10.1073/pnas.96.8.4285.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 4285-4288
    • Pellegrini, M.1    Marcotte, E.2    Thompson, M.3    Eisenberg, D.4    Yeates, T.5
  • 90
    • 4644231028 scopus 로고    scopus 로고
    • Prolinks: a database of protein functional linkages derived from coevolution.
    • 416471, 15128449, 10.1186/gb-2004-5-5-r35
    • Bowers P, Pellegrini M, Thompson M, Fierro J, Yeates T, Eisenberg D. Prolinks: a database of protein functional linkages derived from coevolution. Genome Biol 2004, 5:R35. 416471, 15128449, 10.1186/gb-2004-5-5-r35.
    • (2004) Genome Biol , vol.5
    • Bowers, P.1    Pellegrini, M.2    Thompson, M.3    Fierro, J.4    Yeates, T.5    Eisenberg, D.6
  • 91
    • 0038010034 scopus 로고    scopus 로고
    • Tissue-specific gene expression and ecdysone-regulated genomic networks in Drosophila.
    • 10.1016/S1534-5807(03)00192-8, 12852852
    • Li TR, White KP. Tissue-specific gene expression and ecdysone-regulated genomic networks in Drosophila. Dev Cell 2003, 5:59-72. 10.1016/S1534-5807(03)00192-8, 12852852.
    • (2003) Dev Cell , vol.5 , pp. 59-72
    • Li, T.R.1    White, K.P.2
  • 92
    • 0346460960 scopus 로고    scopus 로고
    • Paucity of genes on the Drosophila X chromosome showing male-biased expression.
    • 1363366, 12511656, 10.1126/science.1079190
    • Parisi M, Nuttall R, Naiman D, Bouffard G, Malley J, Andrews J, Eastman S, Oliver B. Paucity of genes on the Drosophila X chromosome showing male-biased expression. Science 2003, 299:697-700. 1363366, 12511656, 10.1126/science.1079190.
    • (2003) Science , vol.299 , pp. 697-700
    • Parisi, M.1    Nuttall, R.2    Naiman, D.3    Bouffard, G.4    Malley, J.5    Andrews, J.6    Eastman, S.7    Oliver, B.8
  • 94
    • 34948889112 scopus 로고    scopus 로고
    • Global analyses of mRNA translational control during early Drosophila embryogenesis.
    • 1896012, 17448252, 10.1186/gb-2007-8-4-r63
    • Qin X, Ahn S, Speed TP, Rubin GM. Global analyses of mRNA translational control during early Drosophila embryogenesis. Genome Biol 2007, 8:R63. 1896012, 17448252, 10.1186/gb-2007-8-4-r63.
    • (2007) Genome Biol , vol.8
    • Qin, X.1    Ahn, S.2    Speed, T.P.3    Rubin, G.M.4
  • 95
    • 33746223511 scopus 로고    scopus 로고
    • The genomic response to 20-hydroxyecdysone at the onset of Drosophila metamorphosis.
    • 1414087, 16356271, 10.1186/gb-2005-6-12-r99
    • Beckstead RB, Lam G, Thummel CS. The genomic response to 20-hydroxyecdysone at the onset of Drosophila metamorphosis. Genome Biol 2005, 6:R99. 1414087, 16356271, 10.1186/gb-2005-6-12-r99.
    • (2005) Genome Biol , vol.6
    • Beckstead, R.B.1    Lam, G.2    Thummel, C.S.3
  • 96
    • 29144438879 scopus 로고    scopus 로고
    • Full genome gene expression analysis of the heat stress response in Drosophila melanogaster.
    • 16333985, 10.1379/CSC-128R1.1, 1283958
    • Sorensen JG, Nielsen MM, Kruhoffer M, Justesen J, Loeschcke V. Full genome gene expression analysis of the heat stress response in Drosophila melanogaster. Cell Stress Chaperones 2005, 10:312-328. 16333985, 10.1379/CSC-128R1.1, 1283958.
    • (2005) Cell Stress Chaperones , vol.10 , pp. 312-328
    • Sorensen, J.G.1    Nielsen, M.M.2    Kruhoffer, M.3    Justesen, J.4    Loeschcke, V.5
  • 98
    • 33746872979 scopus 로고    scopus 로고
    • Expression profiling of glial genes during Drosophila embryogenesis.
    • 10.1016/j.ydbio.2006.04.460, 16762338
    • Altenhein B, Becker A, Busold C, Beckmann B, Hoheisel JD, Technau GM. Expression profiling of glial genes during Drosophila embryogenesis. Dev Biol 2006, 296:545-560. 10.1016/j.ydbio.2006.04.460, 16762338.
    • (2006) Dev Biol , vol.296 , pp. 545-560
    • Altenhein, B.1    Becker, A.2    Busold, C.3    Beckmann, B.4    Hoheisel, J.D.5    Technau, G.M.6
  • 99
    • 33749404034 scopus 로고    scopus 로고
    • Quantitative genomics of aggressive behavior in Drosophila melanogaster.
    • 1564424, 17044737, 10.1371/journal.pgen.0020154
    • Edwards AC, Rollmann SM, Morgan TJ, Mackay TF. Quantitative genomics of aggressive behavior in Drosophila melanogaster. PLoS Genet 2006, 2:e154. 1564424, 17044737, 10.1371/journal.pgen.0020154.
    • (2006) PLoS Genet , vol.2
    • Edwards, A.C.1    Rollmann, S.M.2    Morgan, T.J.3    Mackay, T.F.4
  • 100
    • 33846491681 scopus 로고    scopus 로고
    • Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis.
    • 17224916, 1800352, 10.1038/msb4100112
    • Hooper SD, Boué S, Krause R, Jensen LJ, Mason CE, Ghanim M, White KP, Furlong EE, Bork P. Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis. Mol Syst Biol 2007, 3:72. 17224916, 1800352, 10.1038/msb4100112.
    • (2007) Mol Syst Biol , vol.3 , pp. 72
    • Hooper, S.D.1    Boué, S.2    Krause, R.3    Jensen, L.J.4    Mason, C.E.5    Ghanim, M.6    White, K.P.7    Furlong, E.E.8    Bork, P.9
  • 101
    • 33646858607 scopus 로고    scopus 로고
    • A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development.
    • 10.1016/j.devcel.2006.04.009, 16740481
    • Sandmann T, Jensen LJ, Jakobsen JS, Karzynski MM, Eichenlaub MP, Bork P, Furlong EE. A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development. Dev Cell 2006, 10:797-807. 10.1016/j.devcel.2006.04.009, 16740481.
    • (2006) Dev Cell , vol.10 , pp. 797-807
    • Sandmann, T.1    Jensen, L.J.2    Jakobsen, J.S.3    Karzynski, M.M.4    Eichenlaub, M.P.5    Bork, P.6    Furlong, E.E.7
  • 102
    • 34249804498 scopus 로고    scopus 로고
    • Using FlyAtlas to identify better Drosophila melanogaster models of human disease.
    • 10.1038/ng2049, 17534367
    • Chintapalli VR, Wang J, Dow JA. Using FlyAtlas to identify better Drosophila melanogaster models of human disease. Nat Genet 2007, 39:715-720. 10.1038/ng2049, 17534367.
    • (2007) Nat Genet , vol.39 , pp. 715-720
    • Chintapalli, V.R.1    Wang, J.2    Dow, J.A.3
  • 104
    • 80055091440 scopus 로고    scopus 로고
    • The R Project for Statistical Computing
    • The R Project for Statistical Computing. , http://www.r-project.org/
  • 105
    • 17444399363 scopus 로고    scopus 로고
    • OLIN: optimized normalization, visualization and quality testing of two-channel microarray data.
    • 10.1093/bioinformatics/bti199, 15585527
    • Futschik ME, Crompton T. OLIN: optimized normalization, visualization and quality testing of two-channel microarray data. Bioinformatics 2005, 21:1724-1726. 10.1093/bioinformatics/bti199, 15585527.
    • (2005) Bioinformatics , vol.21 , pp. 1724-1726
    • Futschik, M.E.1    Crompton, T.2
  • 107
    • 10844290766 scopus 로고    scopus 로고
    • A model-based background adjustment for oligonucleotide expression arrays.
    • 10.1198/016214504000000683
    • Wu Z, Irizarry R, Gentleman R, Martinez-Murillo F, Spencer F. A model-based background adjustment for oligonucleotide expression arrays. J Am Stat Assoc 2001, 99:909-917. 10.1198/016214504000000683.
    • (2001) J Am Stat Assoc , vol.99 , pp. 909-917
    • Wu, Z.1    Irizarry, R.2    Gentleman, R.3    Martinez-Murillo, F.4    Spencer, F.5
  • 108
    • 76249120223 scopus 로고    scopus 로고
    • Affymetrix Drosophila Platform Files
    • Affymetrix Drosophila Platform Files. , http://www.affymetrix.com/support/technical/byproduct.affx?cat=arrays
  • 110
    • 0038478096 scopus 로고    scopus 로고
    • Semantic similarity measures as tools for exploring the Gene Ontology.
    • Lord P, Stevens R, Brass A, Goble C. Semantic similarity measures as tools for exploring the Gene Ontology. Pac Symp Biocomput 2003, 601-612.
    • (2003) Pac Symp Biocomput , pp. 601-612
    • Lord, P.1    Stevens, R.2    Brass, A.3    Goble, C.4
  • 111
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns.
    • 24541, 9843981, 10.1073/pnas.95.25.14863
    • Eisen MB, Spellman PT, Brown PO, Botstein D. Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 1998, 95:14863-14868. 24541, 9843981, 10.1073/pnas.95.25.14863.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 113
    • 76249132005 scopus 로고    scopus 로고
    • KEGG Drosophila Download FTP Directory
    • KEGG Drosophila Download FTP Directory. , ftp://ftp.genome.jp/pub/kegg/pathway/organisms/dme/
  • 114
    • 29144464381 scopus 로고    scopus 로고
    • ArrayExpress
    • ArrayExpress. , http://www.ebi.ac.uk/microarray-as/ae/


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