메뉴 건너뛰기




Volumn 78, Issue 6, 2006, Pages 1011-1025

Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOMOLECULAR INTERACTION NETWORK DATABASE; BREAST CANCER; GENE; GENE FUNCTION; GENE INTERACTION; GENE LOCUS; GENE NETWORK; GENE ONTOLOGY DATABASE; GENETIC ANALYSIS; GENETIC DATABASE; GENETIC DISORDER; GENETIC SUSCEPTIBILITY; GENETIC VARIABILITY; HUMAN; HUMAN GENOME; HUMAN PROTEIN REFERENCE DATABASE; KYOTO ENCYCLOPEDIA OF GENES AND GENOMES; MICROARRAY ANALYSIS; MULTIFACTORIAL INHERITANCE; ONLINE MENDELIAN INHERITANCE IN MAN DATABASE; POSITIONAL CANDIDATE GENE; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; REACTOME; TWO HYBRID SYSTEM;

EID: 33646884801     PISSN: 00029297     EISSN: None     Source Type: Journal    
DOI: 10.1086/504300     Document Type: Article
Times cited : (419)

References (57)
  • 1
    • 0033873202 scopus 로고    scopus 로고
    • Physical mapping and exclusion of GPR34 as the causative gene for congenital stationary night blindness type 1
    • Jacobi FK, Broghammer M, Pesch K, Zrenner E, Berger W, Meindl A, Pusch CM (2000) Physical mapping and exclusion of GPR34 as the causative gene for congenital stationary night blindness type 1. Hum Genet 107:89-91
    • (2000) Hum Genet , vol.107 , pp. 89-91
    • Jacobi, F.K.1    Broghammer, M.2    Pesch, K.3    Zrenner, E.4    Berger, W.5    Meindl, A.6    Pusch, C.M.7
  • 3
    • 0027162213 scopus 로고
    • Genetic mapping of the breast-ovarian cancer syndrome to a small interval on chromosome 17q12-21: Exclusion of candidate genes EDH1762 and RARA
    • Simard J, Feunteun J, Lenoir G, Tonin P, Normand T, Luu The V, Vivier A, et al (1993) Genetic mapping of the breast-ovarian cancer syndrome to a small interval on chromosome 17q12-21: exclusion of candidate genes EDH1762 and RARA. Hum Mol Genet 2:1193-1199
    • (1993) Hum Mol Genet , vol.2 , pp. 1193-1199
    • Simard, J.1    Feunteun, J.2    Lenoir, G.3    Tonin, P.4    Normand, T.5    Luu The, V.6    Vivier, A.7
  • 4
    • 0037123369 scopus 로고    scopus 로고
    • Genomic structure, chromosome mapping and expression analysis of the human AVIL gene, and its exclusion as a candidate for locus for inflammatory bowel disease at 12q13-14 (IBD2)
    • Tumer Z, Croucher PJ, Jensen LR, Hampe J, Hansen C, Kalscheuer V, Ropers HH, Tommerup N, Schreiber S (2002) Genomic structure, chromosome mapping and expression analysis of the human AVIL gene, and its exclusion as a candidate for locus for inflammatory bowel disease at 12q13-14 (IBD2). Gene 288:179-185
    • (2002) Gene , vol.288 , pp. 179-185
    • Tumer, Z.1    Croucher, P.J.2    Jensen, L.R.3    Hampe, J.4    Hansen, C.5    Kalscheuer, V.6    Ropers, H.H.7    Tommerup, N.8    Schreiber, S.9
  • 7
    • 0035379611 scopus 로고    scopus 로고
    • The emerging genetic and molecular basis of Fanconi anaemia
    • Joenje H, Patel KJ (2001) The emerging genetic and molecular basis of Fanconi anaemia. Nat Rev Genet 2:446-457
    • (2001) Nat Rev Genet , vol.2 , pp. 446-457
    • Joenje, H.1    Patel, K.J.2
  • 8
    • 0037268338 scopus 로고    scopus 로고
    • The Fanconi anaemia/BRCA pathway
    • D'Andrea AD, Grompe M (2003) The Fanconi anaemia/BRCA pathway. Nat Rev Cancer 3:23-34
    • (2003) Nat Rev Cancer , vol.3 , pp. 23-34
    • D'Andrea, A.D.1    Grompe, M.2
  • 11
  • 20
    • 14744270216 scopus 로고    scopus 로고
    • A first-draft human protein-interaction map
    • Lehner B, Fraser AG (2004) A first-draft human protein-interaction map. Genome Biol 5:R63
    • (2004) Genome Biol , vol.5
    • Lehner, B.1    Fraser, A.G.2
  • 21
    • 1542787787 scopus 로고    scopus 로고
    • POCUS: Mining genomic sequence annotation to predict disease genes
    • Turner FS, Clutterbuck DR, Semple CA (2003) POCUS: mining genomic sequence annotation to predict disease genes. Genome Biol 4:R75
    • (2003) Genome Biol , vol.4
    • Turner, F.S.1    Clutterbuck, D.R.2    Semple, C.A.3
  • 22
    • 3042841887 scopus 로고    scopus 로고
    • From syndrome families to functional genomics
    • Brunner HG, van Driel MA (2004) From syndrome families to functional genomics. Nat Rev Genet 5:545-551
    • (2004) Nat Rev Genet , vol.5 , pp. 545-551
    • Brunner, H.G.1    Van Driel, M.A.2
  • 24
    • 1842532350 scopus 로고    scopus 로고
    • The Bayesian revolution in genetics
    • Beaumont MA, Rannala B (2004) The Bayesian revolution in genetics. Nat Rev Genet 5:251-261
    • (2004) Nat Rev Genet , vol.5 , pp. 251-261
    • Beaumont, M.A.1    Rannala, B.2
  • 27
    • 9444239213 scopus 로고    scopus 로고
    • A probabilistic functional network of yeast genes
    • Lee I, Date SV, Adai AT, Marcotte EM (2004) A probabilistic functional network of yeast genes. Science 306:1555-1558
    • (2004) Science , vol.306 , pp. 1555-1558
    • Lee, I.1    Date, S.V.2    Adai, A.T.3    Marcotte, E.M.4
  • 30
    • 4644306020 scopus 로고    scopus 로고
    • Analyzing protein function on a genomic scale: The importance of gold-standard positives and negatives for network prediction
    • Jansen R, Gerstein M (2004) Analyzing protein function on a genomic scale: the importance of gold-standard positives and negatives for network prediction. Curr Opin Microbiol 7:535-545
    • (2004) Curr Opin Microbiol , vol.7 , pp. 535-545
    • Jansen, R.1    Gerstein, M.2
  • 31
    • 3042514191 scopus 로고    scopus 로고
    • Coexpression analysis of human genes across many microarray data sets
    • Lee HK, Hsu AK, Sajdak J, Qin J, Pavlidis P (2004) Coexpression analysis of human genes across many microarray data sets. Genome Res 14:1085-1094
    • (2004) Genome Res , vol.14 , pp. 1085-1094
    • Lee, H.K.1    Hsu, A.K.2    Sajdak, J.3    Qin, J.4    Pavlidis, P.5
  • 32
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: A fast search method for large DNA databases
    • Ning Z, Cox AJ, Mullikin JC (2001) SSAHA: a fast search method for large DNA databases. Genome Res 11:1725-1729
    • (2001) Genome Res , vol.11 , pp. 1725-1729
    • Ning, Z.1    Cox, A.J.2    Mullikin, J.C.3
  • 34
    • 84856043672 scopus 로고
    • A mathematical theory of communication
    • Shannon CE (1948) A mathematical theory of communication. Bell Syst Tech J 27:379-423, 623-356
    • (1948) Bell Syst Tech J , vol.27 , pp. 379-423
    • Shannon, C.E.1
  • 35
    • 84945709831 scopus 로고
    • Algorithm 97: Shortest path
    • Floyd RW (1962) Algorithm 97: shortest path. Commun ACM 5:345
    • (1962) Commun ACM , vol.5 , pp. 345
    • Floyd, R.W.1
  • 37
    • 0031078007 scopus 로고    scopus 로고
    • Feature selection: Evaluation, application and small sample performance
    • Jain A, Zongker D (1997) Feature selection: evaluation, application and small sample performance. IEEE Trans Pattern Anal 19:153-158
    • (1997) IEEE Trans Pattern Anal , vol.19 , pp. 153-158
    • Jain, A.1    Zongker, D.2
  • 38
    • 0017971122 scopus 로고
    • Monotonicity of performance of Bayesian classifiers
    • Waller WG, Jain AK (1978) Monotonicity of performance of Bayesian classifiers. IEEE Trans Inform Theory 24:392-394
    • (1978) IEEE Trans Inform Theory , vol.24 , pp. 392-394
    • Waller, W.G.1    Jain, A.K.2
  • 40
    • 1442335997 scopus 로고    scopus 로고
    • Gene expression-based high-throughput screening (GE-HTS) and application to leukemia differentiation
    • Stegmaier K, Ross KN, Colavito SA, O'Malley S, Stockwell BR, Golub TR (2004) Gene expression-based high-throughput screening (GE-HTS) and application to leukemia differentiation. Nat Genet 36:257-263
    • (2004) Nat Genet , vol.36 , pp. 257-263
    • Stegmaier, K.1    Ross, K.N.2    Colavito, S.A.3    O'Malley, S.4    Stockwell, B.R.5    Golub, T.R.6
  • 41
    • 2342561003 scopus 로고    scopus 로고
    • Toxicity from radiation therapy associated with abnormal transcriptional responses to DNA damage
    • Rieger KE, Hong WJ, Tusher VG, Tang J, Tibshirani R, Chu G (2004) Toxicity from radiation therapy associated with abnormal transcriptional responses to DNA damage. Proc Natl Acad Sci USA 101:6635-6640
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 6635-6640
    • Rieger, K.E.1    Hong, W.J.2    Tusher, V.G.3    Tang, J.4    Tibshirani, R.5    Chu, G.6
  • 42
    • 4444236147 scopus 로고    scopus 로고
    • Portrait of transcriptional responses to ultraviolet and ionizing radiation in human cells
    • Rieger KE, Chu G (2004) Portrait of transcriptional responses to ultraviolet and ionizing radiation in human cells. Nucleic Acids Res 32:4786-4803
    • (2004) Nucleic Acids Res , vol.32 , pp. 4786-4803
    • Rieger, K.E.1    Chu, G.2
  • 43
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi AL, Oltvai ZN (2004) Network biology: understanding the cell's functional organization. Nat Rev Genet 5:101-113
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 44
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Ho Y, Gruhler A, Heilbut A, Bader GD, Moore L, Adams SL, Millar A, et al (2002) Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry. Nature 415:180-183
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1    Gruhler, A.2    Heilbut, A.3    Bader, G.D.4    Moore, L.5    Adams, S.L.6    Millar, A.7
  • 46
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, Bauer A, Schultz J, et al (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415:141-147
    • (2002) Nature , vol.415 , pp. 141-147
    • Gavin, A.C.1    Bosche, M.2    Krause, R.3    Grandi, P.4    Marzioch, M.5    Bauer, A.6    Schultz, J.7
  • 48
    • 1542345539 scopus 로고    scopus 로고
    • Increasing specificity in high-throughput yeast two-hybrid experiments
    • Vidalain PO, Boxem M, Ge H, Li S, Vidal M (2004) Increasing specificity in high-throughput yeast two-hybrid experiments. Methods 32:363-370
    • (2004) Methods , vol.32 , pp. 363-370
    • Vidalain, P.O.1    Boxem, M.2    Ge, H.3    Li, S.4    Vidal, M.5
  • 51
    • 0036325427 scopus 로고    scopus 로고
    • Genomics and natural language processing
    • Yandell MD, Majoros WH (2002) Genomics and natural language processing. Nat Rev Genet 3:601-610
    • (2002) Nat Rev Genet , vol.3 , pp. 601-610
    • Yandell, M.D.1    Majoros, W.H.2
  • 52
    • 33646883760 scopus 로고    scopus 로고
    • CONAN: An integrative system for biomedical literature mining
    • Malik R, Siebes A (2005) CONAN: an integrative system for biomedical literature mining. Lect Notes Artif Intell 3808:248-259
    • (2005) Lect Notes Artif Intell , vol.3808 , pp. 248-259
    • Malik, R.1    Siebes, A.2
  • 53
    • 0347473809 scopus 로고    scopus 로고
    • Gaining confidence in high-throughput protein interaction networks
    • Bader JS, Chaudhuri A, Rothberg JM, Chant J (2004) Gaining confidence in high-throughput protein interaction networks. Nat Biotechnol 22:78-85
    • (2004) Nat Biotechnol , vol.22 , pp. 78-85
    • Bader, J.S.1    Chaudhuri, A.2    Rothberg, J.M.3    Chant, J.4
  • 57
    • 4143076901 scopus 로고    scopus 로고
    • Efficient computation of significance levels for multiple associations in large studies of correlated data, including genomewide association studies
    • Dudbridge F, Koeleman BP (2004) Efficient computation of significance levels for multiple associations in large studies of correlated data, including genomewide association studies. Am J Hum Genet 75:424-435
    • (2004) Am J Hum Genet , vol.75 , pp. 424-435
    • Dudbridge, F.1    Koeleman, B.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.