-
1
-
-
33644782643
-
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
-
Adl, S.M., Simpson, A.G., Farmer, M.A., Andersen, R.A., Anderson, O.R., Barta, J.R., Bowser, S.S., Brugerolle, G., Fensome, R.A., Fredericq, S., James, T.Y., Karpov, S., Kugrens, P., Krug, J., Lane, C.E., Lewis, L.A., Lodge, J., Lynn, D.H., Mann, D.G., McCourt, R.M., Mendoza, L, Moestrup, O., Mozley-Standridge, S.E., Nerad, TA, Shearer, C.A., Smirnov, A.V., Spiegel, F.W., Taylor, M.F., 2005. The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J.Eukaryot. Microbiol. 52, 399-451.
-
(2005)
J.Eukaryot. Microbiol.
, vol.52
, pp. 399-451
-
-
Adl, S.M.1
Simpson, A.G.2
Farmer, M.A.3
Andersen, R.A.4
Anderson, O.R.5
Barta, J.R.6
Bowser, S.S.7
Brugerolle, G.8
Fensome, R.A.9
Fredericq, S.10
James, T.Y.11
Karpov, S.12
Kugrens, P.13
Krug, J.14
Lane, C.E.15
Lewis, L.A.16
Lodge, J.17
Lynn, D.H.18
Mann, D.G.19
McCourt, R.M.20
Mendoza, L.21
Moestrup, O.22
Mozley-Standridge, S.E.23
Nerad, T.A.24
Shearer, C.A.25
Smirnov, A.V.26
Spiegel, F.W.27
Taylor, M.F.28
more..
-
2
-
-
1342309210
-
Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference
-
Altekar, G., Dwarkadas, S., Huelsenbeck, J.P., Ronquist, F., 2004. Parallel Metropolis coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20, 407-415.
-
(2004)
Bioinformatics
, vol.20
, pp. 407-415
-
-
Altekar, G.1
Dwarkadas, S.2
Huelsenbeck, J.P.3
Ronquist, F.4
-
3
-
-
0037154011
-
A cyanobacterial gene in nonphotosynthetic protists-an early chloroplast acquisition in Eukaryotes?
-
Andersson, J.O., Roger, A.J., 2002. A cyanobacterial gene in nonphotosynthetic protists-an early chloroplast acquisition in Eukaryotes? Curr. Biol. 12, 115-119.
-
(2002)
Curr. Biol.
, vol.12
, pp. 115-119
-
-
Andersson, J.O.1
Roger, A.J.2
-
4
-
-
14544283723
-
Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data
-
Arisue, N., Hasegawa, M., Hashimoto, T., 2005. Root of the Eukaryota tree as inferred from combined maximum likelihood analyses of multiple molecular sequence data. Mol. Biol. Evol. 22, 409-420.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 409-420
-
-
Arisue, N.1
Hasegawa, M.2
Hashimoto, T.3
-
5
-
-
0037841805
-
The deep roots of eukaryotes
-
Baldauf, S.L., 2003. The deep roots of eukaryotes. Science 300,1703-1706.
-
(2003)
Science
, vol.300
, pp. 1703-1706
-
-
Baldauf, S.L.1
-
6
-
-
48349126261
-
Chlamydial genes shed light on the evolution of photoautotrophic eukaryotes
-
Becker, B., Hoef-Emden, K., Melkonian, M., 2008. Chlamydial genes shed light on the evolution of photoautotrophic eukaryotes. BMC Evol. Biol. 8, 203.
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 203
-
-
Becker, B.1
Hoef-Emden, K.2
Melkonian, M.3
-
7
-
-
34347357371
-
The intracellular cyanobacteria of Paulinella chromatophora: Endosymbionts or organelles?
-
Bodył, A, Mackiewicz, P., Stiller, J.W., 2007. The intracellular cyanobacteria of Paulinella chromatophora: endosymbionts or organelles? Trends Microbiol. 15, 295-296.
-
(2007)
Trends Microbiol
, vol.15
, pp. 295-296
-
-
Bodył, A.1
Mackiewicz, P.2
Stiller, J.W.3
-
8
-
-
33845510737
-
Did the peridinin plastid evolve through tertiary endosymbiosis? A hypothesis
-
Bodył, A., Moszczynski, K., 2006. Did the peridinin plastid evolve through tertiary endosymbiosis? A hypothesis. Eur. J. Phycol. 41, 435-448.
-
(2006)
Eur. J. Phycol.
, vol.41
, pp. 435-448
-
-
Bodył, A.1
Moszczynski, K.2
-
9
-
-
0022592312
-
Genome reorganization in Tetrahymena
-
Brunk, C.F., 1986. Genome reorganization in Tetrahymena. Int. Rev. Cytol. 99,49-70.
-
(1986)
Int. Rev. Cytol.
, vol.99
, pp. 49-70
-
-
Brunk, C.F.1
-
10
-
-
40749116835
-
Phylogenomics reshuffles the eukaryotic supergroups
-
Burki, F., Shalchian-Tabrizi, K., Minge, M., Skjeeveland, Å., Nikolaev, S.I., Jakobsen, K.S., Pawlowski, J., 2007. Phylogenomics reshuffles the eukaryotic supergroups. PLoS ONE 2, e790.
-
(2007)
PLoS ONE
, vol.2
-
-
Burki, F.1
Shalchian-Tabrizi, K.2
Minge, M.3
Skjeeveland, Å.4
Nikolaev, S.I.5
Jakobsen, K.S.6
Pawlowski, J.7
-
11
-
-
46949092431
-
Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes
-
Burki, F., Shalchian-Tabrizi, K., Pawlowski, J., 2008. Phylogenomics reveals a new 'megagroup' including most photosynthetic eukaryotes. Biol. Lett. 4, 366-369.
-
(2008)
Biol. Lett.
, vol.4
, pp. 366-369
-
-
Burki, F.1
Shalchian-Tabrizi, K.2
Pawlowski, J.3
-
12
-
-
0035986877
-
Contrasting rates of mitochondrial molecular evolution in parasitic Diptera and Hymenoptera
-
Castro, L.R., Austin, A.D., Dowton, M., 2002. Contrasting rates of mitochondrial molecular evolution in parasitic Diptera and Hymenoptera. Mol. Biol. Evol. 19, 1100-1103.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 1100-1103
-
-
Castro, L.R.1
Austin, A.D.2
Dowton, M.3
-
13
-
-
0003265745
-
The excavate protozoan phyla Metamonada Grasse emend. (Anaeromonadea, Parabasalia, Carpediemonas, Eopharyngia) and Loukozoa emend. (Jakobea, Malawimonas): Their evolutionary affinities and new higher taxa
-
Cavalier-Smith, T., 2003. The excavate protozoan phyla Metamonada Grasse emend. (Anaeromonadea, Parabasalia, Carpediemonas, Eopharyngia) and Loukozoa emend. (Jakobea, Malawimonas): their evolutionary affinities and new higher taxa. Int. J. Syst. Evol. Microbiol. 53, 1741-1758.
-
(2003)
J. Syst. Evol. Microbiol.
, vol.53
, pp. 1741-1758
-
-
Cavalier-Smith, T.1
-
14
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein, J., 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
15
-
-
56449118832
-
Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis
-
Frommolt, R., Werner, S., Paulsen, H., Goss, R., Wilhelm, C, Zauner, S., Maier, U.G., Grossman, A.R., Bhattacharya, D., Lohr, M., 2008. Ancient recruitment by chromists of green algal genes encoding enzymes for carotenoid biosynthesis. Mol. Biol. Evol. 25, 2653-2667.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 2653-2667
-
-
Frommolt, R.1
Werner, S.2
Paulsen, H.3
Goss, R.4
Wilhelm, C.5
Zauner, S.6
Maier, U.G.7
Grossman, A.R.8
Bhattacharya, D.9
Lohr, M.10
-
16
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon, S., Gascuel, O., 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52, 696-704.
-
(2003)
Syst. Biol.
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
17
-
-
34547754024
-
Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates
-
Hackett, J.D., Yoon, H.S., Li, S., Reyes-Prieto, A., Rümmele, S.E., Bhattacharya, D., 2007. Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of rhizaria with chromalveolates. Mol. Biol. Evol. 24, 1702-1713.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1702-1713
-
-
Hackett, J.D.1
Yoon, H.S.2
Li, S.3
Reyes-Prieto, A.4
Rümmele, S.E.5
Bhattacharya, D.6
-
18
-
-
62649113993
-
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups"
-
Hampl, V., Hug, L., Leigh, J.W., Dacks, J.B., Lang, B.F., Simpson, A.G., Roger, A.J., 2009. Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic "supergroups". Proc. Natl. Acad. Sci. USA 106, 3859-3864.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 3859-3864
-
-
Hampl, V.1
Hug, L.2
Leigh, J.W.3
Dacks, J.B.4
Lang, B.F.5
Simpson, A.G.6
Roger, A.J.7
-
19
-
-
47249160614
-
The origin of plastids
-
Howe, C.J., Barbrook, A.C., Nisbet, R.E., Lockhart, P.J., Larkum, A.W., 2008. The origin of plastids. Philos. Trans. R. Soc. Lond. B Biol. Sci. 363, 2675-2685.
-
(2008)
Philos. Trans. R. Soc. Lond. B Biol. Sci.
, vol.363
, pp. 2675-2685
-
-
Howe, C.J.1
Barbrook, A.C.2
Nisbet, R.E.3
Lockhart, P.J.4
Larkum, A.W.5
-
20
-
-
39549122214
-
Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids?
-
Huang, J., Gogarten, J.P., 2007. Did an ancient chlamydial endosymbiosis facilitate the establishment of primary plastids? Genome Biol. 8, R99.
-
(2007)
Genome Biol.
, vol.8
-
-
Huang, J.1
Gogarten, J.P.2
-
21
-
-
50349085790
-
EEF2 analysis challenges the monophyly of Archaeplastida and Chromalveolata
-
Kim, E., Graham, L.E., 2008. EEF2 analysis challenges the monophyly of Archaeplastida and Chromalveolata. PLoS ONE 3, e2621.
-
(2008)
PLoS ONE
, vol.3
-
-
Kim, E.1
Graham, L.E.2
-
22
-
-
0024307824
-
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
-
Kishino, H., Hasegawa, M., 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29, 170-179.
-
(1989)
J. Mol. Evol.
, vol.29
, pp. 170-179
-
-
Kishino, H.1
Hasegawa, M.2
-
23
-
-
0025181359
-
Maximum likelihood inference of protein phylogeny, and the origin of chloroplasts
-
Kishino, H., Miyata, T., Hasegawa, M., 1990. Maximum likelihood inference of protein phylogeny, and the origin of chloroplasts. J. Mol. Evol. 31, 151-160.
-
(1990)
J. Mol. Evol.
, vol.31
, pp. 151-160
-
-
Kishino, H.1
Miyata, T.2
Hasegawa, M.3
-
24
-
-
0034452727
-
Identification of Photosystem I components from a glaucocystophyte, Cyanophora paradoxa: The PsaD protein has an N-terminal stretch homologous to higher plants
-
Koike, H., Shibata, M., Yasutomi, K., Kashino, Y., Satoh, K., 2000. Identification of Photosystem I components from a glaucocystophyte, Cyanophora paradoxa: the PsaD protein has an N-terminal stretch homologous to higher plants. Photosynth. Res. 65, 207-217.
-
(2000)
Photosynth. Res.
, vol.65
, pp. 207-217
-
-
Koike, H.1
Shibata, M.2
Yasutomi, K.3
Kashino, Y.4
Satoh, K.5
-
25
-
-
34248152659
-
Shopping for plastids
-
Larkum, A.W., Lockhart, P.J., Howe, C.J., 2007. Shopping for plastids. Trends Plant Sci. 12, 189-195.
-
(2007)
Trends Plant Sci.
, vol.12
, pp. 189-195
-
-
Larkum, A.W.1
Lockhart, P.J.2
Howe, C.J.3
-
26
-
-
0035936577
-
The molecular basis of nuclear genetic code change in ciliates
-
Lozupone, C.A., Knight, R.D., Landweber, L.F., 2001. The molecular basis of nuclear genetic code change in ciliates. Curr. Biol. 11, 65-74.
-
(2001)
Curr. Biol.
, vol.11
, pp. 65-74
-
-
Lozupone, C.A.1
Knight, R.D.2
Landweber, L.F.3
-
27
-
-
33646260701
-
Genes for the peptidoglycan synthesis pathway are essential for chloroplast division in moss
-
Machida, M., Takechi, K., Sato, H., Chung, S.J., Kuroiwa, H., Takio, S., Seki, M., Shinozaki, K., Fujita, T., Hasebe, M., Takano, H., 2006. Genes for the peptidoglycan synthesis pathway are essential for chloroplast division in moss. Proc. Natl. Acad. Sci. USA 103, 6753-6758.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 6753-6758
-
-
Machida, M.1
Takechi, K.2
Sato, H.3
Chung, S.J.4
Kuroiwa, H.5
Takio, S.6
Seki, M.7
Shinozaki, K.8
Fujita, T.9
Hasebe, M.10
Takano, H.11
-
28
-
-
0036803528
-
Bβ-tubulin gene of Porphyra purpurea (Rhodophyta)
-
Mackay, R.M., Gallant, J.W., 2002. Bβ-tubulin gene of Porphyra purpurea (Rhodophyta). J. Phycol. 38, 1020-1023.
-
(2002)
J. Phycol.
, vol.38
, pp. 1020-1023
-
-
Mackay, R.M.1
Gallant, J.W.2
-
29
-
-
44949146132
-
Origins of a cyanobacterial 6-phosphogluconate dehydrogenase in plastid-lacking eukaryotes
-
Maruyama, S., Misawa, K., Iseki, M., Watanabe, M., Nozaki, H., 2008. Origins of a cyanobacterial 6-phosphogluconate dehydrogenase in plastid-lacking eukaryotes. BMC Evol. Biol. 8, 151.
-
(2008)
BMC Evol. Biol.
, vol.8
, pp. 151
-
-
Maruyama, S.1
Misawa, K.2
Iseki, M.3
Watanabe, M.4
Nozaki, H.5
-
30
-
-
44649178727
-
A cryptic algal group unveiled: A plastid biosynthesis pathway in the oyster parasite Perkinsus marinus
-
Matsuzaki, M., Kuroiwa, H., Kuroiwa, T., Kita, K., Nozaki, H., 2008. A cryptic algal group unveiled: a plastid biosynthesis pathway in the oyster parasite Perkinsus marinus. Mol. Biol. Evol. 25, 1167-1179.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1167-1179
-
-
Matsuzaki, M.1
Kuroiwa, H.2
Kuroiwa, T.3
Kita, K.4
Nozaki, H.5
-
31
-
-
11144354393
-
Genome sequence of the ultra-small unicellular red alga Cyanidioschyzon merolae 10D
-
Matsuzaki, M., Misumi, O., Shin-i, T., Maruyama, S., Takahara, M., Miyagishima, S., Mori, T., Nishida, K., Yagisawa, F., Nishida, K., Yoshida, Y., Nishimura, Y., Nakao, S., Kobayashi, T., Momoyama, Y., Higashiyama, T., Minoda, A., Sano, M., Nomoto, H., Oishi, K., Hayashi, H., Ohta, F., Nishizaka, S., Haga, S., Miura, S., Morishita, T., Kabeya, Y., Terasawa, K., Suzuki, Y., Ishii, Y., Asakawa, S., Takano, H., Ohta, N., Kuroiwa, H., Tanaka, K., Shimizu, N., Sugano, S., Sato, N., Nozaki, H., Ogasawara, N., Kohara, Y., Kuroiwa, T., 2004. Genome sequence of the ultra-small unicellular red alga Cyanidioschyzon merolae 10D. Nature 428, 653-657.
-
(2004)
Nature
, vol.428
, pp. 653-657
-
-
Matsuzaki, M.1
Misumi, O.2
Shin-i, T.3
Maruyama, S.4
Takahara, M.5
Miyagishima, S.6
Mori, T.7
Nishida, K.8
Yagisawa, F.9
Nishida, K.10
Yoshida, Y.11
Nishimura, Y.12
Nakao, S.13
Kobayashi, T.14
Momoyama, Y.15
Higashiyama, T.16
Minoda, A.17
Sano, M.18
Nomoto, H.19
Oishi, K.20
Hayashi, H.21
Ohta, F.22
Nishizaka, S.23
Haga, S.24
Miura, S.25
Morishita, T.26
Kabeya, Y.27
Terasawa, K.28
Suzuki, Y.29
Ishii, Y.30
Asakawa, S.31
Takano, H.32
Ohta, N.33
Kuroiwa, H.34
Tanaka, K.35
Shimizu, N.36
Sugano, S.37
Sato, N.38
Nozaki, H.39
Ogasawara, N.40
Kohara, Y.41
Kuroiwa, T.42
more..
-
32
-
-
48249125417
-
Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions
-
Moustafa, A., Reyes-Prieto, A., Bhattacharya, D., 2008. Chlamydiae has contributed at least 55 genes to Plantae with predominantly plastid functions. PLoS ONE 3, e2205.
-
(2008)
PLoS ONE
, vol.3
-
-
Moustafa, A.1
Reyes-Prieto, A.2
Bhattacharya, D.3
-
33
-
-
0033050538
-
Synonymous codon choices in the extremely GC-poor genome of Plasmodium falciparum: Compositional constraints and translational selection
-
Musto, H., Romero, H., Zavala, A., Jabbari, K., Bernardi, G., 1999. Synonymous codon choices in the extremely GC-poor genome of Plasmodium falciparum: compositional constraints and translational selection. J. Mol. Evol. 49, 27-35.
-
(1999)
J. Mol. Evol.
, vol.49
, pp. 27-35
-
-
Musto, H.1
Romero, H.2
Zavala, A.3
Jabbari, K.4
Bernardi, G.5
-
34
-
-
0030458552
-
Phylogenetic analysis in molecular evolutionary genetics
-
Nei, M., 1996. Phylogenetic analysis in molecular evolutionary genetics. Annu. Rev. Genet. 30, 371-403.
-
(1996)
Annu. Rev. Genet.
, vol.30
, pp. 371-403
-
-
Nei, M.1
-
35
-
-
42049092254
-
Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes
-
Nowack, E.C., Melkonian, M., Glöckner, G., 2008. Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes. Curr. Biol. 18, 410-418.
-
(2008)
Curr. Biol.
, vol.18
, pp. 410-418
-
-
Nowack, E.C.1
Melkonian, M.2
Glöckner, G.3
-
36
-
-
26044468458
-
A new scenario of plastid evolution: Plastid primary endosymbiosis before the divergence of the "Plantae", emended
-
Nozaki, H., 2005. A new scenario of plastid evolution: plastid primary endosymbiosis before the divergence of the "Plantae", emended. J. Plant Res. 118, 247-255.
-
(2005)
J. Plant Res.
, vol.118
, pp. 247-255
-
-
Nozaki, H.1
-
37
-
-
34547785048
-
Phylogeny of primary photosynthetic eukaryotes as deduced from slowly evolving nuclear genes
-
Nozaki, H., Iseki, M., Hasegawa, M., Misawa, K., Nakada, T., Sasaki, N., Watanabe, M., 2007. Phylogeny of primary photosynthetic eukaryotes as deduced from slowly evolving nuclear genes. Mol. Biol. Evol. 24, 1592-1595.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1592-1595
-
-
Nozaki, H.1
Iseki, M.2
Hasegawa, M.3
Misawa, K.4
Nakada, T.5
Sasaki, N.6
Watanabe, M.7
-
38
-
-
0037381973
-
The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids
-
Nozaki, H., Matsuzaki, M., Takahara, M., Misumi, O., Kuroiwa, H., Hasegawa, M., Shin-i, T., Kohara, Y., Ogasawara, N., Kuroiwa, T., 2003. The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J. Mol. Evol. 56, 485-497.
-
(2003)
J. Mol. Evol.
, vol.56
, pp. 485-497
-
-
Nozaki, H.1
Matsuzaki, M.2
Takahara, M.3
Misumi, O.4
Kuroiwa, H.5
Hasegawa, M.6
Shin-i, T.7
Kohara, Y.8
Ogasawara, N.9
Kuroiwa, T.10
-
39
-
-
6344265521
-
Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates
-
Patron, N.J., Rogers, M.B., Keeling, P.J., 2004. Gene replacement of fructose-1,6-bisphosphate aldolase supports the hypothesis of a single photosynthetic ancestor of chromalveolates. Eukaryot. Cell 3, 1169-1175.
-
(2004)
Eukaryot. Cell
, vol.3
, pp. 1169-1175
-
-
Patron, N.J.1
Rogers, M.B.2
Keeling, P.J.3
-
40
-
-
33646881141
-
A "green", phosphoribulokinase in complex algae with red plastids: Evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates
-
Petersen, J., Teich, R., Brinkmann, H., Cerff, R., 2006. A "green" phosphoribulokinase in complex algae with red plastids: evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates. J. Mol. Evol. 62, 143-157.
-
(2006)
J. Mol. Evol.
, vol.62
, pp. 143-157
-
-
Petersen, J.1
Teich, R.2
Brinkmann, H.3
Cerff, R.4
-
41
-
-
0030048929
-
Primary structure of cyanelle peptidoglycan of Cyanophora paradoxa: A prokaryotic cell wall as part of an organelle envelope
-
Pfanzagl, B., Zenker, A., Pittenauer, E., Allmaier, G., Martinez-Torrecuadrada, J., Schmid, E.R., De Pedro, M.A., Löffelhardt, W., 1996. Primary structure of cyanelle peptidoglycan of Cyanophora paradoxa: a prokaryotic cell wall as part of an organelle envelope. J. Bacteriol. 178, 332-339.
-
(1996)
J. Bacteriol
, vol.178
, pp. 332-339
-
-
Pfanzagl, B.1
Zenker, A.2
Pittenauer, E.3
Allmaier, G.4
Martinez-Torrecuadrada, J.5
Schmid, E.R.6
De Pedro, M.A.7
Löffelhardt, W.8
-
42
-
-
17744386162
-
Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia
-
Philippe, H., Lartillot, N., Brinkmann, H., 2005. Multigene analyses of bilaterian animals corroborate the monophyly of Ecdysozoa, Lophotrochozoa, and Protostomia. Mol. Biol. Evol. 22, 1246-1253.
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 1246-1253
-
-
Philippe, H.1
Lartillot, N.2
Brinkmann, H.3
-
44
-
-
35848942371
-
Phylogeny of nuclear-encoded plastid-targeted proteins supports an early divergence of glaucophytes within Plantae
-
Reyes-Prieto, A., Bhattacharya, D., 2007a. Phylogeny of nuclear-encoded plastid-targeted proteins supports an early divergence of glaucophytes within Plantae. Mol. Biol. Evol. 24, 2358-2361.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 2358-2361
-
-
Reyes-Prieto, A.1
Bhattacharya, D.2
-
45
-
-
34548501300
-
Phylogeny of Calvin cycle enzymes supports Plantae monophyly
-
Reyes-Prieto, A., Bhattacharya, D., 2007b. Phylogeny of Calvin cycle enzymes supports Plantae monophyly. Mol. Phylogenet. Evol. 45, 384-391.
-
(2007)
Mol. Phylogenet. Evol.
, vol.45
, pp. 384-391
-
-
Reyes-Prieto, A.1
Bhattacharya, D.2
-
46
-
-
45849124190
-
Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic
-
Reyes-Prieto, A., Moustafa, A., Bhattacharya, D., 2008. Multiple genes of apparent algal origin suggest ciliates may once have been photosynthetic. Curr. Biol. 18, 956-962.
-
(2008)
Curr. Biol.
, vol.18
, pp. 956-962
-
-
Reyes-Prieto, A.1
Moustafa, A.2
Bhattacharya, D.3
-
47
-
-
33847656285
-
Detecting and overcoming systematic errors in genome-scale phylogenies
-
Rodríguez-Ezpeleta, N., Brinkmann, H., Roure, B., Lartillot, N., Lang, B.F., Philippe, H., 2007. Detecting and overcoming systematic errors in genome-scale phylogenies. Syst. Biol. 56, 389-399.
-
(2007)
Syst. Biol.
, vol.56
, pp. 389-399
-
-
Rodríguez-Ezpeleta, N.1
Brinkmann, H.2
Roure, B.3
Lartillot, N.4
Lang, B.F.5
Philippe, H.6
-
48
-
-
22744445156
-
Monophyly of primary photosynthetic eukaryotes: Green plants, red algae, and glaucophytes
-
Rodríguez-Ezpeleta, N., Brinkmann, H., Burey, S.C., Roure, B., Burger, G., Loffelhardt, W., Bohnert, H.J., Philippe, H., Lang, B.F., 2005. Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes. Curr. Biol. 15, 1325-1330.
-
(2005)
Curr. Biol.
, vol.15
, pp. 1325-1330
-
-
Rodríguez-Ezpeleta, N.1
Brinkmann, H.2
Burey, S.C.3
Roure, B.4
Burger, G.5
Loffelhardt, W.6
Bohnert, H.J.7
Philippe, H.8
Lang, B.F.9
-
49
-
-
60349108359
-
Evolution: Revisiting the root of the eukaryote tree
-
Roger, A.J., Simpson, A.G., 2009. Evolution: revisiting the root of the eukaryote tree. Curr. Biol. 19, R165-R167.
-
(2009)
Curr. Biol.
, vol.19
-
-
Roger, A.J.1
Simpson, A.G.2
-
50
-
-
0041386108
-
MRBAYES 3: Bayesian phylogenetic inference under mixed models
-
Ronquist, F., Huelsenbeck, J.P., 2001. MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574.
-
(2001)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
51
-
-
78650927676
-
Glaucocystophyta model for symbiogenous evolution of new eukaryotic species
-
Seckbach, J. (Ed.), Kluwer Academic Publishers, Dordrecht
-
Schenk, H.E.A., 1994. Glaucocystophyta model for symbiogenous evolution of new eukaryotic species. In: Seckbach, J. (Ed.), Developments of Hydrobiology, Evolutionary Pathways and Enigmatic Algae, vol. 91. Kluwer Academic Publishers, Dordrecht, pp. 19-52.
-
(1994)
Developments of Hydrobiology, Evolutionary Pathways and Enigmatic Algae
, vol.91
, pp. 19-52
-
-
Schenk, H.E.A.1
-
52
-
-
0036205377
-
TREE-PUZZLE:maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt, H.A., Strimmer, K., Vingron, M., von Haeseler, A., 2002. TREE-PUZZLE:maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18, 502-504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
Strimmer, K.2
Vingron, M.3
Von Haeseler, A.4
-
53
-
-
0034915667
-
Isolation and characterization of oxygen-evolving thylakoid membranes and photosystem II particles from a glaucocystophyte, Cyanophora paradoxa
-
Shibata, M., Kashino, Y., Satoh, K., Koike, H., 2001. Isolation and characterization of oxygen-evolving thylakoid membranes and photosystem II particles from a glaucocystophyte, Cyanophora paradoxa. Plant Cell Physiol. 42, 733-741.
-
(2001)
Plant Cell Physiol
, vol.42
, pp. 733-741
-
-
Shibata, M.1
Kashino, Y.2
Satoh, K.3
Koike, H.4
-
54
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira, H., 2002. An approximately unbiased test of phylogenetic tree selection. Syst. Biol. 51, 492-508.
-
(2002)
Syst. Biol.
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
-
55
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
Shimodaira, H., Hasegawa, M., 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17, 1246-1247.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
56
-
-
45849090251
-
Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina
-
Slamovits, C.H., Keeling, P.J., 2008. Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina. Mol. Biol. Evol. 25, 1297-1306.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1297-1306
-
-
Slamovits, C.H.1
Keeling, P.J.2
-
57
-
-
14644397888
-
RAxML-III: A fast program for maximum likelihood-based inference of large phylogenetic trees
-
Stamatakis, A., Ludwig, T., Meier, H., 2005. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics 21, 456-463.
-
(2005)
Bioinformatics
, vol.21
, pp. 456-463
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
58
-
-
0037025197
-
Rooting the eukaryote tree by using a derived gene fusion
-
Stechmann, A., Cavalier-Smith, T., 2002. Rooting the eukaryote tree by using a derived gene fusion. Science 297, 89-91.
-
(2002)
Science
, vol.297
, pp. 89-91
-
-
Stechmann, A.1
Cavalier-Smith, T.2
-
59
-
-
30744458518
-
Weighing the evidence for a single origin of plastids
-
Stiller, J.W., 2003. Weighing the evidence for a single origin of plastids. J. Phycol. 39, 1283-1285.
-
(2003)
J. Phycol.
, vol.39
, pp. 1283-1285
-
-
Stiller, J.W.1
-
60
-
-
30744433373
-
The largest subunit of RNA polymerase II from the Glaucocystophyta: Functional constraint and short-branch exclusion in deep eukaryotic phylogeny
-
Stiller, J.W., Harrell, L., 2005. The largest subunit of RNA polymerase II from the Glaucocystophyta: functional constraint and short-branch exclusion in deep eukaryotic phylogeny. BMC Evol. Biol. 5, 71.
-
(2005)
BMC Evol. Biol.
, vol.5
, pp. 71
-
-
Stiller, J.W.1
Harrell, L.2
-
61
-
-
0037324534
-
A single origin of plastids revisited: Convergent evolution in organellar genome content
-
Stiller, J.W., Reel, D.C., Johnson, J.C., 2003. A single origin of plastids revisited: convergent evolution in organellar genome content. J. Phycol. 39, 95-105.
-
(2003)
J. Phycol.
, vol.39
, pp. 95-105
-
-
Stiller, J.W.1
Reel, D.C.2
Johnson, J.C.3
-
62
-
-
0034986210
-
Are red algae plants? A critical evaluation of three key molecular data sets
-
Stiller, J.W., Riley, J., Hall, B.D., 2001. Are red algae plants? A critical evaluation of three key molecular data sets. J. Mol. Evol. 52, 527-539.
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 527-539
-
-
Stiller, J.W.1
Riley, J.2
Hall, B.D.3
-
64
-
-
34249707387
-
Is there a plastid in Perkinsus atlanticus (Phylum Perkinsozoa)?
-
Teles-Grilo, M.L., Tato-Costa, J., Duarte, S.M., Maia, A., Casal, G., Azevedo, C., 2007. Is there a plastid in Perkinsus atlanticus (Phylum Perkinsozoa)? Eur. J. Protistol. 43, 163-167.
-
(2007)
Eur. J. Protistol.
, vol.43
, pp. 163-167
-
-
Teles-Grilo, M.L.1
Tato-Costa, J.2
Duarte, S.M.3
Maia, A.4
Casal, G.5
Azevedo, C.6
-
65
-
-
0031574072
-
The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J.D., Gibson, T.J., Plewniak, F., Jeanmougin, F., Higgins, D.G., 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 25, 4876-4882.
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
66
-
-
1942469414
-
A molecular timeline for the origin of photosynthetic eukaryotes
-
Yoon, H.S., Hackett, J.D., Ciniglia, C., Pinto, G., Bhattacharya, D., 2004. A molecular timeline for the origin of photosynthetic eukaryotes. Mol. Biol. Evol. 21, 809-818.
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 809-818
-
-
Yoon, H.S.1
Hackett, J.D.2
Ciniglia, C.3
Pinto, G.4
Bhattacharya, D.5
-
67
-
-
33750627783
-
Minimal plastid genome evolution in the Paulinella endosymbiont
-
Yoon, H.S., Reyes-Prieto, A., Melkonian, M., Bhattacharya, D., 2006. Minimal plastid genome evolution in the Paulinella endosymbiont. Curr. Biol. 16, R670-R672.
-
(2006)
Curr. Biol.
, vol.16
-
-
Yoon, H.S.1
Reyes-Prieto, A.2
Melkonian, M.3
Bhattacharya, D.4
-
68
-
-
9444266430
-
The apicoplast: A review of the derived plastid of apicomplexan parasites
-
Waller, R.F., McFadden, G.I., 2005. The apicoplast: a review of the derived plastid of apicomplexan parasites. Curr. Issues Mol. Biol. 7, 57-79.
-
(2005)
Curr. Issues Mol. Biol.
, vol.7
, pp. 57-79
-
-
Waller, R.F.1
Mcfadden, G.I.2
-
69
-
-
0035031966
-
A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach
-
Whelan, S., Goldman, N., 2001. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol. Biol. Evol. 18, 691-699.
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 691-699
-
-
Whelan, S.1
Goldman, N.2
|