메뉴 건너뛰기




Volumn 45, Issue 1, 2007, Pages 384-391

Phylogeny of Calvin cycle enzymes supports Plantae monophyly

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME; FRUCTOSE BISPHOSPHATE ALDOLASE;

EID: 34548501300     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2007.02.026     Document Type: Article
Times cited : (60)

References (36)
  • 1
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: selection of best-fit models of protein evolution
    • Abascal F., Zardoya R., and Posada D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21 (2005) 2104-2105
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 3
    • 0347635417 scopus 로고    scopus 로고
    • Photosynthetic eukaryotes unite: endosymbiosis connects the dots
    • Bhattacharya D., Yoon H.S., and Hackett J.D. Photosynthetic eukaryotes unite: endosymbiosis connects the dots. BioEssays 26 (2004) 50-60
    • (2004) BioEssays , vol.26 , pp. 50-60
    • Bhattacharya, D.1    Yoon, H.S.2    Hackett, J.D.3
  • 4
    • 0000528430 scopus 로고
    • The path of carbon in photosynthesis
    • Calvin M., and Benson A.A. The path of carbon in photosynthesis. Science 107 (1948) 476-480
    • (1948) Science , vol.107 , pp. 476-480
    • Calvin, M.1    Benson, A.A.2
  • 5
    • 0019764215 scopus 로고
    • Eukaryote kingdoms: seven or nine?
    • Cavalier-Smith T. Eukaryote kingdoms: seven or nine?. Biosystems 14 (1981) 461-481
    • (1981) Biosystems , vol.14 , pp. 461-481
    • Cavalier-Smith, T.1
  • 7
    • 0029897169 scopus 로고    scopus 로고
    • Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids
    • Delwiche C.F., and Palmer J.D. Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Mol. Biol. Evol. 13 (1996) 873-882
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 873-882
    • Delwiche, C.F.1    Palmer, J.D.2
  • 8
    • 0035103466 scopus 로고    scopus 로고
    • Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids
    • Fast N.M., Kissinger J.C., Roos D.S., and Keeling P.J. Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids. Mol. Biol. Evol. 18 (2001) 418-426
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 418-426
    • Fast, N.M.1    Kissinger, J.C.2    Roos, D.S.3    Keeling, P.J.4
  • 9
    • 0033011182 scopus 로고    scopus 로고
    • Chloroplast class I and class II aldolases are bifunctional for fructose-1,6-biphosphate and sedoheptulose-1,7-biphosphate cleavage in the Calvin cycle
    • Flechner A., Gross W., Martin W.F., and Schnarrenberger C. Chloroplast class I and class II aldolases are bifunctional for fructose-1,6-biphosphate and sedoheptulose-1,7-biphosphate cleavage in the Calvin cycle. FEBS Lett. 447 (1999) 200-202
    • (1999) FEBS Lett. , vol.447 , pp. 200-202
    • Flechner, A.1    Gross, W.2    Martin, W.F.3    Schnarrenberger, C.4
  • 10
    • 0027951015 scopus 로고
    • Two distinct aldolases of class II type in the cyanoplasts and in the cytosol of the alga Cyanophora paradoxa
    • Gross W., Bayer M.G., Schnarrenberger C., Gebhart U.B., Maier T.L., and Schenk H. Two distinct aldolases of class II type in the cyanoplasts and in the cytosol of the alga Cyanophora paradoxa. Plant Physiol. 105 (1994) 1393-1398
    • (1994) Plant Physiol. , vol.105 , pp. 1393-1398
    • Gross, W.1    Bayer, M.G.2    Schnarrenberger, C.3    Gebhart, U.B.4    Maier, T.L.5    Schenk, H.6
  • 11
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 12
    • 0028675654 scopus 로고
    • Chloroplast and cytosolic triosephosphate isomerases from spinach: purification, microsequencing and cDNA cloning of the chloroplast enzyme
    • Henze K., Schnarrenberger C., Kellermann J., and Martin W. Chloroplast and cytosolic triosephosphate isomerases from spinach: purification, microsequencing and cDNA cloning of the chloroplast enzyme. Plant Mol. Biol. 26 (1994) 1961-1973
    • (1994) Plant Mol. Biol. , vol.26 , pp. 1961-1973
    • Henze, K.1    Schnarrenberger, C.2    Kellermann, J.3    Martin, W.4
  • 13
    • 0026604146 scopus 로고
    • Fructose-bisphosphate aldolases: an evolutionary history
    • Marsh J.J., and Lebherz H.G. Fructose-bisphosphate aldolases: an evolutionary history. Trends Biochem. Sci. 17 (1992) 110-113
    • (1992) Trends Biochem. Sci. , vol.17 , pp. 110-113
    • Marsh, J.J.1    Lebherz, H.G.2
  • 14
    • 0033082247 scopus 로고    scopus 로고
    • Mosaic bacterial chromosomes: a challenge en route to a tree of genomes
    • Martin W. Mosaic bacterial chromosomes: a challenge en route to a tree of genomes. Bioessays 21 (1999) 99-104
    • (1999) Bioessays , vol.21 , pp. 99-104
    • Martin, W.1
  • 15
    • 0030850422 scopus 로고    scopus 로고
    • The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: a case study of functional redundancy in ancient pathways through endosymbiosis
    • Martin W., and Schnarrenberger C. The evolution of the Calvin cycle from prokaryotic to eukaryotic chromosomes: a case study of functional redundancy in ancient pathways through endosymbiosis. Curr. Genet. 32 (1997) 1-18
    • (1997) Curr. Genet. , vol.32 , pp. 1-18
    • Martin, W.1    Schnarrenberger, C.2
  • 16
    • 0030293672 scopus 로고    scopus 로고
    • Higher-plant chloroplast and cytosolic fructose-1,6-bisphosphatase isoenzymes: origins via duplication rather than prokaryote-eukaryote divergence
    • Martin W., Mustafa A.Z., Henze K., and Schnarrenberger C. Higher-plant chloroplast and cytosolic fructose-1,6-bisphosphatase isoenzymes: origins via duplication rather than prokaryote-eukaryote divergence. Plant Mol. Biol. 32 (1996) 485-491
    • (1996) Plant Mol. Biol. , vol.32 , pp. 485-491
    • Martin, W.1    Mustafa, A.Z.2    Henze, K.3    Schnarrenberger, C.4
  • 18
    • 0344520370 scopus 로고    scopus 로고
    • Purification and characterization of class-I and class-II fructose-1,6-bisphosphate aldolases from the cyanobacterium Synechocystis sp. PCC 6803
    • Nakahara K., Yamamoto H., Miyake C., and Yokota A. Purification and characterization of class-I and class-II fructose-1,6-bisphosphate aldolases from the cyanobacterium Synechocystis sp. PCC 6803. Plant Cell Physiol. 44 (2003) 326-333
    • (2003) Plant Cell Physiol. , vol.44 , pp. 326-333
    • Nakahara, K.1    Yamamoto, H.2    Miyake, C.3    Yokota, A.4
  • 19
    • 0034494616 scopus 로고    scopus 로고
    • Cyanophora paradoxa: nucleotide sequence and phylogeny of the nucleus encoded muroplast fructose-1,6-bisphosphate aldolase
    • Nickol A.A., Muller N.E., Bausenwein U., Bayer M.G., Maier T.L., and Schenk H.E. Cyanophora paradoxa: nucleotide sequence and phylogeny of the nucleus encoded muroplast fructose-1,6-bisphosphate aldolase. Z. Naturforsch. 55 (2000) 991-1003
    • (2000) Z. Naturforsch. , vol.55 , pp. 991-1003
    • Nickol, A.A.1    Muller, N.E.2    Bausenwein, U.3    Bayer, M.G.4    Maier, T.L.5    Schenk, H.E.6
  • 21
    • 0037381973 scopus 로고    scopus 로고
    • The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids
    • Nozaki H., Matsuzaki M., Takahara M., Misumi O., Kuroiwa H., Hasegawa M., Shin-i T., Kohara Y., Ogasawara N., and Kuroiwa T. The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J. Mol. Evol. 56 (2003) 485-497
    • (2003) J. Mol. Evol. , vol.56 , pp. 485-497
    • Nozaki, H.1    Matsuzaki, M.2    Takahara, M.3    Misumi, O.4    Kuroiwa, H.5    Hasegawa, M.6    Shin-i, T.7    Kohara, Y.8    Ogasawara, N.9    Kuroiwa, T.10
  • 22
    • 33646867843 scopus 로고    scopus 로고
    • The GapA/B gene duplication marks the origin of Streptophyta (charophytes and land plants)
    • Petersen J., Teich R., Becker B., Cerff R., and Brinkmann H. The GapA/B gene duplication marks the origin of Streptophyta (charophytes and land plants). Mol. Biol. Evol. 23 (2006) 1109-1118
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 1109-1118
    • Petersen, J.1    Teich, R.2    Becker, B.3    Cerff, R.4    Brinkmann, H.5
  • 23
    • 33751422757 scopus 로고    scopus 로고
    • Cyanobacterial contribution to algal nuclear genomes is primarily limited to plastid functions
    • Reyes-Prieto A., Hackett J.D., Bonaldo M.F., Soares M.B., and Bhattacharya D. Cyanobacterial contribution to algal nuclear genomes is primarily limited to plastid functions. Curr. Biol. 16 (2006) 2320-2325
    • (2006) Curr. Biol. , vol.16 , pp. 2320-2325
    • Reyes-Prieto, A.1    Hackett, J.D.2    Bonaldo, M.F.3    Soares, M.B.4    Bhattacharya, D.5
  • 24
    • 33748895571 scopus 로고    scopus 로고
    • An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters
    • Rice D.W., and Palmer J.D. An exceptional horizontal gene transfer in plastids: gene replacement by a distant bacterial paralog and evidence that haptophyte and cryptophyte plastids are sisters. BMC Biol. 4 (2006) 31
    • (2006) BMC Biol. , vol.4 , pp. 31
    • Rice, D.W.1    Palmer, J.D.2
  • 25
    • 33748857142 scopus 로고    scopus 로고
    • Evolutionary origins of the eukaryotic shikimate pathway: gene fusions, horizontal gene transfer, and endosymbiotic replacements
    • Richards T.A., Dacks J.B., Campbell S.A., Blanchard J.L., Foster P.G., McLeod R., and Roberts C.W. Evolutionary origins of the eukaryotic shikimate pathway: gene fusions, horizontal gene transfer, and endosymbiotic replacements. Eukaryot. Cell 5 (2006) 1517-1531
    • (2006) Eukaryot. Cell , vol.5 , pp. 1517-1531
    • Richards, T.A.1    Dacks, J.B.2    Campbell, S.A.3    Blanchard, J.L.4    Foster, P.G.5    McLeod, R.6    Roberts, C.W.7
  • 27
    • 6344249854 scopus 로고    scopus 로고
    • Lateral transfer and recompartmentalization of Calvin cycle enzymes of plants and algae
    • Rogers M., and Keeling P.J. Lateral transfer and recompartmentalization of Calvin cycle enzymes of plants and algae. J. Mol. Evol. 58 (2004) 367-375
    • (2004) J. Mol. Evol. , vol.58 , pp. 367-375
    • Rogers, M.1    Keeling, P.J.2
  • 28
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 29
    • 0028917458 scopus 로고
    • Analysis of the primary structure of the chloroplast isozyme of triosephosphate isomerase from rye leaves by protein and cDNA sequencing indicates a eukaryotic origin of its gene
    • Schmidt M., Svendsen I., and Feierabend J. Analysis of the primary structure of the chloroplast isozyme of triosephosphate isomerase from rye leaves by protein and cDNA sequencing indicates a eukaryotic origin of its gene. Biochim. Biophys. Acta 1261 (1995) 257-264
    • (1995) Biochim. Biophys. Acta , vol.1261 , pp. 257-264
    • Schmidt, M.1    Svendsen, I.2    Feierabend, J.3
  • 31
    • 30744433373 scopus 로고    scopus 로고
    • The largest subunit of RNA polymerase II from the Glaucocystophyta: functional constraint and short-branch exclusion in deep eukaryotic phylogeny
    • Stiller J.W., and Harrell L. The largest subunit of RNA polymerase II from the Glaucocystophyta: functional constraint and short-branch exclusion in deep eukaryotic phylogeny. BMC Evol. Biol. 5 (2005) 71
    • (2005) BMC Evol. Biol. , vol.5 , pp. 71
    • Stiller, J.W.1    Harrell, L.2
  • 32
    • 0032473824 scopus 로고    scopus 로고
    • Acquisition of a new type of fructose-1,6-bisphosphatase with resistance to hydrogen peroxide in cyanobacteria: molecular characterization of the enzyme from Synechocystis PCC 6803
    • Tamoi M., Murakami A., Takeda T., and Shigeoka S. Acquisition of a new type of fructose-1,6-bisphosphatase with resistance to hydrogen peroxide in cyanobacteria: molecular characterization of the enzyme from Synechocystis PCC 6803. Biochim. Biophys. Acta 1383 (1998) 232-244
    • (1998) Biochim. Biophys. Acta , vol.1383 , pp. 232-244
    • Tamoi, M.1    Murakami, A.2    Takeda, T.3    Shigeoka, S.4
  • 33
    • 0037694034 scopus 로고    scopus 로고
    • "Green-like" and "red-like" RubisCO cbbL genes in Rhodobacter azotoformans
    • Uchino Y., and Yokota A. "Green-like" and "red-like" RubisCO cbbL genes in Rhodobacter azotoformans. Mol. Biol. Evol. 20 (2003) 821-830
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 821-830
    • Uchino, Y.1    Yokota, A.2
  • 34
    • 33645081961 scopus 로고    scopus 로고
    • Single, ancient origin of a plastid metabolite translocator family in Plantae from an endomembrane-derived ancestor
    • Weber A., Linka K., and Bhattacharya D. Single, ancient origin of a plastid metabolite translocator family in Plantae from an endomembrane-derived ancestor. Eukaryot. Cell 5 (2006) 609-612
    • (2006) Eukaryot. Cell , vol.5 , pp. 609-612
    • Weber, A.1    Linka, K.2    Bhattacharya, D.3
  • 35
    • 0030924125 scopus 로고    scopus 로고
    • CP12 provides a new mode of light regulation of Calvin cycle activity in higher plants
    • Wedel N., Soll J., and Paap B.K. CP12 provides a new mode of light regulation of Calvin cycle activity in higher plants. Proc. Natl. Acad. Sci. USA 94 (1997) 10479-10484
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 10479-10484
    • Wedel, N.1    Soll, J.2    Paap, B.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.