A single origin of plastids revisited: Convergent evolution in organellar genome content

Journal of Phycology

Volumn 39, Issue 1, 2003, Pages 95-105

  Stiller, John W ^a   Reel, DeEtte C ^a   Johnson, Jeffrey C ^a  

^a EAST CAROLINA UNIVERSITY   (United States)

Author keywords

Convergent evolution; Cyanophora; Endosymbiotic; Marchantia; Mitochondrion; Plastid origin; Porphyra; Reclinomonas; Ribosomal protein; tRNA

Indexed keywords

CONVERGENT EVOLUTION; PLASTID;

CYANOPHORA; EUKARYOTA; MARCHANTIA; PORPHYRA; RECLINOMONAS;

EID: 0037324534     PISSN: 00223646     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1529-8817.2003.02070.x     Document Type: Article

References (57)

1. Adams, K. L., Qiu, Y. L., Stoutemyer, M. & Palmer, J. D. 2002. Punctuated evolution of mitochondrial gene content: high and variable rates of mitochondrial gene loss and transfer to the nucleus during angiosperm evolution. Proc. Natl. Acad. Sci. USA 99:9905-12.
2. Apt, K. E., Hoffman, N. & Grossman, A. R. 1993. The γ subunit of R-phycoerythrin and its possible mode of transport into then plastid of red algae. J. Biol. Chem. 268:16208-15.
3. Barbrook, A. C., Lockhart, P. J. & Howe, C. J. 1998. Phylogenetic analysis of plastid origins based on secA sequences. Curr. Genet. 34:336-41.
4. Bhattacharya, D. & Medlin, L. 1995. The phylogeny of plastids: a review based on comparisons of small-subunit ribosomal RNA coding regions. J. Phycol. 31:489-98.
5. Bhattacharya, D. & Schmidt, H. A. 1997. Division Glaucocystophyta. Plant Syst. Evol. 11 (Suppl):139-48.
6. Blanchard, J. L. & Lynch, M. 2000. Organellar genes: why do they end up in the nucleus? Trends Genet. 16:315-20.
7. Brink, S., Flugge, U. I., Chaumont, F., Boutry, M., Emmerman, M., Schmitz, U., Becker, K. & Pfanner, J. 1994. Preproteins of chloroplast envelope inner membrane contain targeting information for receptor-dependent import into fungal mitochondria J. Biol. Chem. 269:16478-85.
8. Bruce, B. D. 2000. Chloroplast transit peptides: structure, function and evolution. Trends Cell Biol. 10:440-7.
9. Burger, G., Saint-Louis, D., Gray, M. W. & Lang, B. F. 1999. Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea: cyanobacterial introns and shared ancestry of red and green algae. Plant Cell 11:1675-94.
10. Butterfield, N.J. 2000. Bangiomorpha pubescens n gen, n sp: implications for the evolution of sex, multicellularity and the Mesoproterozoic-Neoproterozoic radiation of eukaryotes. Paleobiology 26:386-404.
11. Cavalier-Smith, T. 2000. Membrane heredity and early chloroplast evolution. Trends Plant Sci. 5:174-82.
12. Chabregas, S. M., Luche, D. D., Farias, L. P., Ribeiro, A. F., van Sluys, M. A., Menck, C. F. M. & Silva, M. C. 2001. Dual targeting properties of N-terminal signal sequences of Arabidopsis thaliana THI1 protein to mitochondria and chloroplasts. Plant Mol. Biol. 46:639-50.
13. Cleary, S. P., Tan, F. C., Nakrieko, K. A., Thompson, S. J., Mullineaux, P. M., Creissen, G. P., von Stedingk, E., Glaser, E., Smith, A. G. & Robinson, C. 2002. Isolated plant mitochondria import chloroplast precursor proteins in vitro with the same efficiency as chloroplasts. J. Biol. Chem. 7:5562-69.
14. Delwiche, C. F. 1999. Tracing the thread of plastid diversity through the tapestry of life. Am. Nat. 154:S164-77.
15. Delwiche, C. F. & Palmer, J. D. 1996. Rampant horizontal transfer and duplication of rubisco genes in eubacteria and plastids. Mol. Biol. Evol. 13:873-82.
16. Delwiche, C. F. & Palmer, J. D. 1997. The origin of plastids and their spread via secondary symbiosis. Plant Syst. Evol. 11 (Suppl):53-86.
17. Duby, G. & Boutry, M. 2002. Mitochondrial protein import machinery and targeting information. Plant Sci. 162:477-90.
18. Froderberg, L., Rohl, T., van Wijk, K. J. & de Gier, J. W. L. 2001. Complementation of bacterial SecE by a chloroplast homologue. FEBS Lett. 498:52-6.
19. Gray, M. W., Burger, G. & Lang, F. B. 1999. Mitochondrial evolution. Science 283:1476-81.
20. Huang, J., Hack, E., Thornburg, R. W. & Myers, A. M. 1990. A yeast mitochondrial leader peptide functions in vivo as a dual targeting signal for both chloroplasts and mitochondria. Plant Cell 2: 1249-60.
21. Hurt, E. C., Soltanifar, N., Goldschmidt-Clermont, M., Rochaix, J. D. & Schatz, G. 1986. The cleavable pre-sequence of an imported chloroplast protein directs attached polypeptides into yeast mitochondria. EMBO J. 5:1343-50.
22. Jakowitsch, J., Neumann-Spallart, C., Ma, Y., Steiner, J., Schenk, H. E. A., Bohnert, H. J. & Löffelhardt, W. 1996. In vitro import of pre-ferrodoxin-NADH-oxidoreductase from Cyanophora paradoxa into cyanelles and into pea chloroplasts. FEBS Lett. 381:153-5.
23. King, N. & Carroll, S. B. 2001. A receptor tyrosine kinase from choanoflagellates:molecular insights into early animal evolution. Proc. Natl. Acad. Sci. USA 98:15032-7.
24. Kowallik, K. V. 1994. From endosymbionts to chloroplasts: evidence for a single prokaryotic/eukaryotic endocytobiosis. Endocytobiosis Cell. Res. 10:137-49.
25. Lang, B. F., Gray, M. W. & Burger, G. 1999. Mitochondrial genome evolution and the origin of eukaryotes. Annu. Rev. Genet. 33:351-97.
26. Lang, M., Apt, K. E. & Kroth, P. G. 1998. Protein transport into complex diatom plastids utilizes two different targeting systems. J. Biol. Chem. 273:30973-8.
27. Lee, Y.J., Kim, D. H., Kim, Y. W. & Hwang, I. 2001. Identification of a signal that distinguishes between the chloroplast outer envelope membrane and the endomembrane system in vivo. Plant Cell 13:2175-90.
28. Liu, Y. Y., Akhtar, M. K., Ourmozdi, E. P., Kaderbhai, N. & Kaderbhai, M. A. 2000. A chloroplast envelope-transfer sequence functions as an export signal in Escherichia coli. FEBS Lett. 469:61-6.
29. Lowe, T. M. & Eddy, S. R. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25:955-64.
30. Manly, B. F. J. 1997. Randomization, Bootstrap, and Monte Carlo Methods in Biology. CRC Press, Boca Raton, Florida, 424 pp.
31. Martin, W. & Herrmann, R. G. 1998. Gene transfer from organelles to the nucleus: how much, what happens, and why? Plant Physiol. 118:9-17.
32. Martin, W. S., Stoebe, B., Goremykin, V., Hansmann, S., Hasegawa, M. & Kowallik, K. V. 1998. Gene transfer to the nucleus and the evolution of chloroplasts. Nature 393:162-5.
33. Masarev, D., Newbigin, E., Whelen, J. & Lithgow, T. 2000. How do plant mitochondria avoid importing chloroplast proteins? Components of the import apparatus Tom20 and Tom22 from Arabidopsis differ from their fungal counterparts. Plant Physiol. 123: 811-6.
34. McFadden, G. I. 2001. Primary and secondary endosymbiosis and the origin of plastids. J. Phycol. 37:951-9.
35. Moreira, D. & Philippe, H. 2001. Sure facts and open questions about the origin and evolution of photosynthetic plastids. Res. Microbiol. 152:771-80.
36. Palmer, J. D. 1993. A genetic rainbow of plastids. Nature 364:762-3.
37. Palmer, J. D. 2000. Molecular evolution - a single birth of all plastids? Nature 405:32-3.
38. Peeters, N. & Small, I. 2001. Dual targeting to mitochondria and chloroplasts. Biochim. Biophys. Acta 1541:54-63.
39. Race, H. L., Herrmann, R. G. & Martin, W. 1999. Why have organelles retained genomes? Trends Genet. 15:364-70.
40. Ragan, M. & Gutell, R. 1995. Are red algae plants? Bot. J. Linn. Soc. Lond. 118:81-105.
41. Reith, M. & Munholland, J. 1993. A high-resolution gene map of the chloroplast genome of the red alga Porphyra purpurea. Plant Cell 5:465-75.
42. Reith, M. & Munholland, J. 1995. Complete nucleotide sequence of the Porphyra purpurea chloroplast genome. Plant Mol. Biol. Rep. 13:333-5.
43. Schleiff, E. & Soll, J. 2000. Travelling of proteins through membranes: translocation into chloroplasts. Planta 211:449-56.
44. Selosse, M.-A., Albert, B. & Godelle, B. 2001. Reducing the genome of organdies favours gene transfer to the nucleus. Trends Ecol. Evol. 16:135-41.
45. Settles, M. A. & Martienssen, R. 1998. Old and new pathways of protein export in chloroplasts and bacteria. Trends Cell Biol. 8:494-501.
46. Silva, M. D., Chaumont, F. Leterme, S. & Boutry, M. 1996. Mitochondrial and chloroplast targeting sequences in tandem modify protein import specificity in plant organelles. Plant Mol. Biol. 30:769-80.
47. Snell, E. A., Furlong, R. F. & Holland, P. W. H. 2001. Hsp70 sequences indicate that choanoflagellates are closely related to animals. Curr. Biol. 11:967-70.
48. Steiner, J. M. & Löffelhardt, W. 2002. Protein import into cyanelles. Trends Plant Sci. 7:72-7.
49. Stiller, J. W. & Hall, B. D. 1997. The origin of red algae: implications for plastid evolution. Proc. Natl. Acad. Sci. USA 94:4520-5.
50. Stiller, J. W., Riley, J. & Hall, B. D. 2001. Are red algae plants? A critical evaluation of three key molecular data sets. J. Mol. Evol. 52: 527-39.
51. Stoebe, B. & Kowallik, K. V. 1999. Gene-cluster analysis in chloroplast genomics. Trends Genet. 9:344-7.
52. Swofford, D. L. (1998) PAUP*. Phylogenetic Analysis Using Parsimony. Version 4. Sinauer Associates, Sunderland, Massachusetts.
53. Tomatani, A., Okada, K., Miyashita, H., Matthijs, H. C. P., Ohno, T. & Tanaka, A. 1999. Chlorophyll b and phycobilins in the common ancestor of cyanobacteria and chloroplasts. Nature 400: 159-62.
54. Turner, S. 1997. Molecular systematics of oxygenic photosynthetic bacteria. Plant Syst. Evol. 11 (Suppl):13-52.
55. Turner, S., Pryer, K. M., Miao, V. P. W. & Palmer, J. D. 1999. Investigating deep phylogenetic relationships among Cyanobacteria and plastids by small submit rRNA sequence analysis. J. Euk. Microbiol. 46:327-38.
56. Wainright, P. O., Patterson, D. J. & Sogin, M. L. 1994. Monophyletic origin of animals: a shared ancestry with fungi. In Farmborough, D. M. [Ed.] Molecular Evolution of Physiological Processes. Society of General Physiologists Series No. 49. Rockefeller University Press, New York. pp. 39-53.
57. Zhang, X.-P. & Glaser, E. 2002. Interaction of plant mitochondrial and chloroplast signal peptides with the Hsp70 molecular chaparone. Trends Plant Sci. 7:14-21.