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Volumn 3, Issue 7, 2008, Pages

EEF2 analysis challenges the monophyly of archaeplastida and chromalveolata

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; ELONGATION FACTOR 2; GLYCINE; HEAT SHOCK PROTEIN 70; SERINE;

EID: 50349085790     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0002621     Document Type: Article
Times cited : (49)

References (104)
  • 2
    • 0032744297 scopus 로고    scopus 로고
    • The diversity of eukaryotes
    • Patterson DJ (1999) The diversity of eukaryotes. Am Nat 154: S96-S124.
    • (1999) Am Nat , vol.154
    • Patterson, D.J.1
  • 4
    • 0037025197 scopus 로고    scopus 로고
    • Rooting the eukaryote tree by using a derived gene fusion
    • Stechmann A, Cavalier-Smith T (2002) Rooting the eukaryote tree by using a derived gene fusion. Science 297: 89-91.
    • (2002) Science , vol.297 , pp. 89-91
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 5
    • 24144503755 scopus 로고    scopus 로고
    • Myosin domain evolution and the primary divergence of eukaryotes
    • Richards TA, Cavalier-Smith T (2005) Myosin domain evolution and the primary divergence of eukaryotes. Nature 436: 1113-1118.
    • (2005) Nature , vol.436 , pp. 1113-1118
    • Richards, T.A.1    Cavalier-Smith, T.2
  • 6
    • 0041955201 scopus 로고    scopus 로고
    • Phylogenetic analysis of eukaryotes using heat-shock protein Hsp90
    • Stechmann A, Cavalier-Smith T (2003) Phylogenetic analysis of eukaryotes using heat-shock protein Hsp90. J Mol Evol 57: 408-419.
    • (2003) J Mol Evol , vol.57 , pp. 408-419
    • Stechmann, A.1    Cavalier-Smith, T.2
  • 7
    • 34247096544 scopus 로고    scopus 로고
    • Occurrence of multiple, independent gene fusion events for the fifth and sixth enzymes of pyrimidine biosynthesis in different eukaryotic groups
    • Makiuchi T, Nara T, Annoura T, Hashimoto T, Aoki T (2007) Occurrence of multiple, independent gene fusion events for the fifth and sixth enzymes of pyrimidine biosynthesis in different eukaryotic groups. Gene 394: 78-86.
    • (2007) Gene , vol.394 , pp. 78-86
    • Makiuchi, T.1    Nara, T.2    Annoura, T.3    Hashimoto, T.4    Aoki, T.5
  • 8
    • 33750957132 scopus 로고    scopus 로고
    • Evolutionary relationships of apusomonads inferred from taxon-rich analyses of 6 nuclear encoded genes
    • Kim E, Simpson AGB, Graham LE (2006) Evolutionary relationships of apusomonads inferred from taxon-rich analyses of 6 nuclear encoded genes. Mol Biol Evol 23: 2455-2466.
    • (2006) Mol Biol Evol , vol.23 , pp. 2455-2466
    • Kim, E.1    Simpson, A.G.B.2    Graham, L.E.3
  • 9
    • 20644469673 scopus 로고    scopus 로고
    • Phylogenetic implications of the CAD complex from the primitive red alga Cyanidioschyzon merolae (Cyanidiales, Rhodophyta)
    • Nozaki H, Matsuzaki M, Misumi O, Kuroiwa H, Higashiyama T, et al. (2005) Phylogenetic implications of the CAD complex from the primitive red alga Cyanidioschyzon merolae (Cyanidiales, Rhodophyta). J Phycol 41: 652-657.
    • (2005) J Phycol , vol.41 , pp. 652-657
    • Nozaki, H.1    Matsuzaki, M.2    Misumi, O.3    Kuroiwa, H.4    Higashiyama, T.5
  • 10
    • 33644782643 scopus 로고    scopus 로고
    • The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
    • Adl SM, Simpson AGB, Farmer MA, Andersen RA, Anderson OR, et al. (2005) The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J Eukaryot Microbiol 52: 399-451.
    • (2005) J Eukaryot Microbiol , vol.52 , pp. 399-451
    • Adl, S.M.1    Simpson, A.G.B.2    Farmer, M.A.3    Andersen, R.A.4    Anderson, O.R.5
  • 12
    • 12544255323 scopus 로고    scopus 로고
    • The real 'kingdoms' of eukaryotes
    • Simpson AGB, Roger AJ (2004) The real 'kingdoms' of eukaryotes. Curr Biol 14: R693-R696.
    • (2004) Curr Biol , vol.14
    • Simpson, A.G.B.1    Roger, A.J.2
  • 15
    • 20644433743 scopus 로고    scopus 로고
    • Do plastid-related characters support the chromalveolate hypothesis?
    • Bodyl A (2005) Do plastid-related characters support the chromalveolate hypothesis? J Phycol 41: 712-719.
    • (2005) J Phycol , vol.41 , pp. 712-719
    • Bodyl, A.1
  • 16
    • 0034986210 scopus 로고    scopus 로고
    • Are red algae plants? A critical evaluation of three key molecular data sets
    • Stiller JW, Riley J, Hall BD (2001) Are red algae plants? A critical evaluation of three key molecular data sets. J Mol Evol 52: 527-539.
    • (2001) J Mol Evol , vol.52 , pp. 527-539
    • Stiller, J.W.1    Riley, J.2    Hall, B.D.3
  • 17
  • 18
    • 0037327022 scopus 로고    scopus 로고
    • The symbiotic birth and spread of plastids: How many times and whodunit?
    • Palmer JD (2003) The symbiotic birth and spread of plastids: How many times and whodunit? J Phycol 39: 4-11.
    • (2003) J Phycol , vol.39 , pp. 4-11
    • Palmer, J.D.1
  • 19
    • 0037381973 scopus 로고    scopus 로고
    • The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids
    • Nozaki H, Matsuzaki M, Takahara M, Misumi O, Kuroiwa H, et al. (2003) The phylogenetic position of red algae revealed by multiple nuclear genes from mitochondria-containing eukaryotes and an alternative hypothesis on the origin of plastids. J Mol Evol 56: 485-497.
    • (2003) J Mol Evol , vol.56 , pp. 485-497
    • Nozaki, H.1    Matsuzaki, M.2    Takahara, M.3    Misumi, O.4    Kuroiwa, H.5
  • 20
    • 16644376535 scopus 로고    scopus 로고
    • Response to comment on "The evolution of modern eukaryotic phytoplankton
    • Grzebyk D, Katz ME, Knoll AH, Quigg A, Raven JA, et al. (2004) Response to comment on "The evolution of modern eukaryotic phytoplankton". Science 306: 2191c.
    • (2004) Science , vol.306
    • Grzebyk, D.1    Katz, M.E.2    Knoll, A.H.3    Quigg, A.4    Raven, J.A.5
  • 22
    • 0035852245 scopus 로고    scopus 로고
    • Toc, Tic, and chloroplast protein import
    • Jarvis P, Soll M (2001) Toc, Tic, and chloroplast protein import. Biochim Biophys Acta 1541: 64-79.
    • (2001) Biochim Biophys Acta , vol.1541 , pp. 64-79
    • Jarvis, P.1    Soll, M.2
  • 23
    • 27944503381 scopus 로고    scopus 로고
    • A plastid in the making: Primary endosymbiosis
    • Marin B, Nowack ECM, Melkonian M (2005) A plastid in the making: primary endosymbiosis. Protist 156: 425-432.
    • (2005) Protist , vol.156 , pp. 425-432
    • Marin, B.1    Nowack, E.C.M.2    Melkonian, M.3
  • 24
    • 42049092254 scopus 로고    scopus 로고
    • Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes
    • Nowack ECM, Melkonian M, Glorkner G (2008) Chromatophore genome sequence of Paulinella sheds light on acquisition of photosynthesis by eukaryotes. Curr Biol 18: 410-418.
    • (2008) Curr Biol , vol.18 , pp. 410-418
    • Nowack, E.C.M.1    Melkonian, M.2    Glorkner, G.3
  • 25
    • 34347357371 scopus 로고    scopus 로고
    • The intracellular cyanobacteria of Paulinelia chromatophora: Endosymbionts or organelles?
    • Bodyl A, Mackiewicz P, Stiller JW (2007) The intracellular cyanobacteria of Paulinelia chromatophora: endosymbionts or organelles? Trends Microbiol 15: 295-296.
    • (2007) Trends Microbiol , vol.15 , pp. 295-296
    • Bodyl, A.1    Mackiewicz, P.2    Stiller, J.W.3
  • 26
    • 33845437652 scopus 로고    scopus 로고
    • The difference between organelles and endosymbionts
    • Theissen U, Martin W (2006) The difference between organelles and endosymbionts. Curr Biol 16: R1016-R1017.
    • (2006) Curr Biol , vol.16
    • Theissen, U.1    Martin, W.2
  • 27
    • 33845495613 scopus 로고    scopus 로고
    • The difference between organelles and endosymbionts - response to Theissen and Martin
    • Bhattacharya D, Archibald JM (2006) The difference between organelles and endosymbionts - response to Theissen and Martin. Curr Biol 16: R1017-R1018.
    • (2006) Curr Biol , vol.16
    • Bhattacharya, D.1    Archibald, J.M.2
  • 28
    • 22744459793 scopus 로고    scopus 로고
    • The katablepharids are a distant sister group of the Cryptophyta: A proposal for Katablepharidophyta divisio nova/ Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny
    • Okamoto N, Inouye I (2005) The katablepharids are a distant sister group of the Cryptophyta: a proposal for Katablepharidophyta divisio nova/ Kathablepharida phylum novum based on SSU rDNA and beta-tubulin phylogeny. Protist 156: 163-179.
    • (2005) Protist , vol.156 , pp. 163-179
    • Okamoto, N.1    Inouye, I.2
  • 29
    • 32044467742 scopus 로고    scopus 로고
    • Biology and systematics of heterokont and haptophyte algae
    • Andersen RA (2004) Biology and systematics of heterokont and haptophyte algae. Am J Bot 91: 1508-1522.
    • (2004) Am J Bot , vol.91 , pp. 1508-1522
    • Andersen, R.A.1
  • 30
    • 0032838597 scopus 로고    scopus 로고
    • Principles of protein and lipid targeting in secondary symbiogenesis: Euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree
    • Cavalier-Smith T (1999) Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J Eukaryot Microbiol 46: 347-366.
    • (1999) J Eukaryot Microbiol , vol.46 , pp. 347-366
    • Cavalier-Smith, T.1
  • 31
    • 50349083609 scopus 로고    scopus 로고
    • Graham LE, Wilcox LW (2000) Algae. Upper Saddle River NJ: Prentice Hall.
    • Graham LE, Wilcox LW (2000) Algae. Upper Saddle River NJ: Prentice Hall.
  • 32
    • 0033499020 scopus 로고    scopus 로고
    • Dinophyte chloroplasts and phylogeny: A review
    • Schnepf E, Elbrachter M (1999) Dinophyte chloroplasts and phylogeny: a review. Grana 38: 81-97.
    • (1999) Grana , vol.38 , pp. 81-97
    • Schnepf, E.1    Elbrachter, M.2
  • 33
    • 0040982083 scopus 로고    scopus 로고
    • A plastid of probable green algal origin in apicomplexan parasites
    • Kohler S, Delwiche CF, Denny PW, Tilney LG, Webster P, et al. (1997) A plastid of probable green algal origin in apicomplexan parasites. Science 275: 1485-1489.
    • (1997) Science , vol.275 , pp. 1485-1489
    • Kohler, S.1    Delwiche, C.F.2    Denny, P.W.3    Tilney, L.G.4    Webster, P.5
  • 34
    • 21644480771 scopus 로고    scopus 로고
    • Multi-membrane-bound structures of Apicomplexa: I. the architecture of the Toxoplasma gondii apicoplast
    • Kohler S (2005) Multi-membrane-bound structures of Apicomplexa: I. the architecture of the Toxoplasma gondii apicoplast. Parasitol Res 96: 258-272.
    • (2005) Parasitol Res , vol.96 , pp. 258-272
    • Kohler, S.1
  • 35
    • 0033213013 scopus 로고    scopus 로고
    • The plastid in Plasmodium falciparum asexual blood stages: A three-dimensional ultrastructural analysis
    • Hopkins J, Fowler R, Krishna S, Wilson I, Mitchell G, et al. (1999) The plastid in Plasmodium falciparum asexual blood stages: a three-dimensional ultrastructural analysis. Protist 150: 283-295.
    • (1999) Protist , vol.150 , pp. 283-295
    • Hopkins, J.1    Fowler, R.2    Krishna, S.3    Wilson, I.4    Mitchell, G.5
  • 36
    • 33748477208 scopus 로고    scopus 로고
    • New comprehension of the apicoplast of Sarcocystis by transmission electron tomography
    • Tomova C, Geerts WJC, Muller-Reichert T, Entzeroth R, Humbel BM (2006) New comprehension of the apicoplast of Sarcocystis by transmission electron tomography. Biol Cell 98: 535-545.
    • (2006) Biol Cell , vol.98 , pp. 535-545
    • Tomova, C.1    Geerts, W.J.C.2    Muller-Reichert, T.3    Entzeroth, R.4    Humbel, B.M.5
  • 37
    • 39749142234 scopus 로고    scopus 로고
    • A photosynthetic alveolate closely related to apicomplexan parasites
    • Moore RB, Obornik M, Janouskovec J, Chrudimsky T, Vancova M, et al. (2008) A photosynthetic alveolate closely related to apicomplexan parasites. Nature 451: 959-963.
    • (2008) Nature , vol.451 , pp. 959-963
    • Moore, R.B.1    Obornik, M.2    Janouskovec, J.3    Chrudimsky, T.4    Vancova, M.5
  • 38
    • 0037324534 scopus 로고    scopus 로고
    • A single origin of plastids revisited: Convergent evolution in organellar genome content
    • Stiller JW, Reel DC, Johnson JC (2003) A single origin of plastids revisited: convergent evolution in organellar genome content. J Phycol 39: 95-105.
    • (2003) J Phycol , vol.39 , pp. 95-105
    • Stiller, J.W.1    Reel, D.C.2    Johnson, J.C.3
  • 40
    • 3142738371 scopus 로고    scopus 로고
    • Evolution: Red algal genome affirms a common origin of all plastids
    • McFadden GI, van Dooren GG (2004) Evolution: red algal genome affirms a common origin of all plastids. Curr Biol 14: R514-R516.
    • (2004) Curr Biol , vol.14
    • McFadden, G.I.1    van Dooren, G.G.2
  • 41
    • 0030984331 scopus 로고    scopus 로고
    • The origin of red algae: Implications for plasmid evolution
    • Stiller JW, Hall BD (1997) The origin of red algae: implications for plasmid evolution. Proc Natl Acad Sci U S A 94: 4520-4525.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 4520-4525
    • Stiller, J.W.1    Hall, B.D.2
  • 42
    • 34447271967 scopus 로고    scopus 로고
    • Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids
    • Sanchez-Puerta MV, Bachvaroff TR, Delwiche CF (2007) Sorting wheat from chaff in multi-gene analyses of chlorophyll c-containing plastids. Mol Phylogenet Evol 44: 885-897.
    • (2007) Mol Phylogenet Evol , vol.44 , pp. 885-897
    • Sanchez-Puerta, M.V.1    Bachvaroff, T.R.2    Delwiche, C.F.3
  • 44
    • 0035103466 scopus 로고    scopus 로고
    • Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids
    • Fast NM, Kissinger JC, Roos DS, Keeling PJ (2001) Nuclear-encoded, plastid-targeted genes suggest a single common origin for apicomplexan and dinoflagellate plastids. Mol Biol Evol 18: 418-426.
    • (2001) Mol Biol Evol , vol.18 , pp. 418-426
    • Fast, N.M.1    Kissinger, J.C.2    Roos, D.S.3    Keeling, P.J.4
  • 46
    • 0027420885 scopus 로고
    • Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes
    • Gupta RS, Golding GB (1993) Evolution of HSP70 gene and its implications regarding relationships between archaebacteria, eubacteria, and eukaryotes. J Mol Evol 37: 573-582.
    • (1993) J Mol Evol , vol.37 , pp. 573-582
    • Gupta, R.S.1    Golding, G.B.2
  • 47
    • 0028674882 scopus 로고
    • Phylogenetic analysis of 70 kD heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus
    • Gupta RS, Singh B (1994) Phylogenetic analysis of 70 kD heat shock protein sequences suggests a chimeric origin for the eukaryotic cell nucleus. Curr Biol 4: 1104-1114.
    • (1994) Curr Biol , vol.4 , pp. 1104-1114
    • Gupta, R.S.1    Singh, B.2
  • 48
    • 18744420805 scopus 로고    scopus 로고
    • Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 angstrom resolution
    • Gomez-Lorenzo MG, Spahn CMT, Agrawal RK, Grassucci RA, Penczek P, et al. (2000) Three-dimensional cryo-electron microscopy localization of EF2 in the Saccharomyces cerevisiae 80S ribosome at 17.5 angstrom resolution. EMBO J 19: 2710-2718.
    • (2000) EMBO J , vol.19 , pp. 2710-2718
    • Gomez-Lorenzo, M.G.1    Spahn, C.M.T.2    Agrawal, R.K.3    Grassucci, R.A.4    Penczek, P.5
  • 50
    • 0034604170 scopus 로고    scopus 로고
    • The origin of red algae and the evolution of chloroplasts
    • Moreira D, Le Guyader H, Philippe H (2000) The origin of red algae and the evolution of chloroplasts. Nature 405: 69-72.
    • (2000) Nature , vol.405 , pp. 69-72
    • Moreira, D.1    Le Guyader, H.2    Philippe, H.3
  • 51
    • 0033104491 scopus 로고    scopus 로고
    • Germot a, Philippe H (1999) Critical analysis of eukaryotic phylogeny: a case study based on the HSP70 family. J Eukaryot Microbiol 46: 116-124.
    • Germot a, Philippe H (1999) Critical analysis of eukaryotic phylogeny: a case study based on the HSP70 family. J Eukaryot Microbiol 46: 116-124.
  • 53
    • 31344471014 scopus 로고    scopus 로고
    • Missing data and the design of phylogenetic analyses
    • Wiens JJ (2006) Missing data and the design of phylogenetic analyses. J Biomed Inform 39: 34-42.
    • (2006) J Biomed Inform , vol.39 , pp. 34-42
    • Wiens, J.J.1
  • 54
    • 4143122089 scopus 로고    scopus 로고
    • Phylogenomics of eukaryotes: Impact of missing data on large alignments
    • Philippe H, Snell EA, Bapteste E, Lopez P, Holland PWH, et al. (2004) Phylogenomics of eukaryotes: Impact of missing data on large alignments. Mol Biol Evol 21: 1740-1752.
    • (2004) Mol Biol Evol , vol.21 , pp. 1740-1752
    • Philippe, H.1    Snell, E.A.2    Bapteste, E.3    Lopez, P.4    Holland, P.W.H.5
  • 55
    • 34247899047 scopus 로고    scopus 로고
    • Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages
    • Patron NJ, Inagaki Y, Keeling PJ (2007) Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages. Curr Biol 17: 887-891.
    • (2007) Curr Biol , vol.17 , pp. 887-891
    • Patron, N.J.1    Inagaki, Y.2    Keeling, P.J.3
  • 56
    • 34547754024 scopus 로고    scopus 로고
    • Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of Rhizaria with Chromalveolates
    • Hackett JD, Yoon HS, Li S, Reyes-Prieto A, Rummele SE, et al. (2007) Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of Rhizaria with Chromalveolates. Mol Biol Evol 24: 1702-1713.
    • (2007) Mol Biol Evol , vol.24 , pp. 1702-1713
    • Hackett, J.D.1    Yoon, H.S.2    Li, S.3    Reyes-Prieto, A.4    Rummele, S.E.5
  • 57
    • 0035689472 scopus 로고    scopus 로고
    • Primary and secondary endosymbiosis and the origin of plastids
    • McFadden GI (2001) Primary and secondary endosymbiosis and the origin of plastids. J Phycol 37: 951-959.
    • (2001) J Phycol , vol.37 , pp. 951-959
    • McFadden, G.I.1
  • 58
    • 22744445156 scopus 로고    scopus 로고
    • Monophyly of primary photosynthetic eukaryotes: Green plants, red algae, and glaucophytes
    • Rodriguez-Ezpeleta N, Brinkmann H, Burey SC, Roure B, Burger G, et al. (2005) Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes. Curr Biol 15: 1325-1330.
    • (2005) Curr Biol , vol.15 , pp. 1325-1330
    • Rodriguez-Ezpeleta, N.1    Brinkmann, H.2    Burey, S.C.3    Roure, B.4    Burger, G.5
  • 59
    • 35948973954 scopus 로고    scopus 로고
    • Horizontal gene transfer in chromalveolates
    • Nosenko T, Bhattacharya D (2007) Horizontal gene transfer in chromalveolates. BMC Evol Biol 7: 173.
    • (2007) BMC Evol Biol , vol.7 , pp. 173
    • Nosenko, T.1    Bhattacharya, D.2
  • 60
    • 38049150492 scopus 로고    scopus 로고
    • Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function
    • Lane CE, van den Heuvel K, Korera C, Curtis BA, Parsons BJ, et al. (2007) Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function. Proc Natl Acad Sci U S A 104: 19908-19913.
    • (2007) Proc Natl Acad Sci U S A , vol.104 , pp. 19908-19913
    • Lane, C.E.1    van den Heuvel, K.2    Korera, C.3    Curtis, B.A.4    Parsons, B.J.5
  • 61
    • 0035953753 scopus 로고    scopus 로고
    • The highly reduced genome of an enslaved algal nucleus
    • Douglas S, Zauner S, Fraunholz M, Beaton M, Penny S, et al. (2001) The highly reduced genome of an enslaved algal nucleus. Nature 410: 1091-1096.
    • (2001) Nature , vol.410 , pp. 1091-1096
    • Douglas, S.1    Zauner, S.2    Fraunholz, M.3    Beaton, M.4    Penny, S.5
  • 62
    • 84971169951 scopus 로고
    • Ultrastructure and autecology of the marine, heterotrophic flagellate Leucocryptos marina (Braaud) Butcher 1967 (Kathablepharidaceae/Kathablepharidae), with a discussion of the genera Leucocryptos and Katablepharis/Kathablepharis
    • Vørs N (1992) Ultrastructure and autecology of the marine, heterotrophic flagellate Leucocryptos marina (Braaud) Butcher 1967 (Kathablepharidaceae/Kathablepharidae), with a discussion of the genera Leucocryptos and Katablepharis/Kathablepharis. Eur J Protistol 28: 369-389.
    • (1992) Eur J Protistol , vol.28 , pp. 369-389
    • Vørs, N.1
  • 63
    • 0028086698 scopus 로고
    • Goniomonas: Ribosomal RNA sequences indicate that this phagotrophic flagellate is a close relative of the host component of cryptomonads
    • McFadden GI, Gilson PR, Hill DRA (1994) Goniomonas: ribosomal RNA sequences indicate that this phagotrophic flagellate is a close relative of the host component of cryptomonads. Eur J Phycol 29: 29-32.
    • (1994) Eur J Phycol , vol.29 , pp. 29-32
    • McFadden, G.I.1    Gilson, P.R.2    Hill, D.R.A.3
  • 64
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison WP (1997) Gene trees in species trees. Syst Biol 46: 523-536.
    • (1997) Syst Biol , vol.46 , pp. 523-536
    • Maddison, W.P.1
  • 65
    • 34548391384 scopus 로고    scopus 로고
    • Plastid endosymbiosis, genome evolution and the origin of green plants
    • Stiller JW (2007) Plastid endosymbiosis, genome evolution and the origin of green plants. Trends Plant Sci 12: 391-396.
    • (2007) Trends Plant Sci , vol.12 , pp. 391-396
    • Stiller, J.W.1
  • 66
    • 33644669761 scopus 로고    scopus 로고
    • Homologous protein import machineries in chloroplasts and cyanelles
    • Steiner JM, Yusa F, Pompe JA, Loffelhardt W (2005) Homologous protein import machineries in chloroplasts and cyanelles. Plant J 44: 646-652.
    • (2005) Plant J , vol.44 , pp. 646-652
    • Steiner, J.M.1    Yusa, F.2    Pompe, J.A.3    Loffelhardt, W.4
  • 67
    • 0033200075 scopus 로고    scopus 로고
    • Gene-cluster analysis in chloroplast genomics
    • Stoebe B, Kowallik KV (1999) Gene-cluster analysis in chloroplast genomics. Trends Genet 15: 344-347.
    • (1999) Trends Genet , vol.15 , pp. 344-347
    • Stoebe, B.1    Kowallik, K.V.2
  • 68
    • 0032951790 scopus 로고    scopus 로고
    • A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications for plastid evolution
    • Durnford DG, Deane JA, Tan S, McFadden GI, Gantt E, et al. (1999) A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications for plastid evolution. J Mol Evol 48: 58-68.
    • (1999) J Mol Evol , vol.48 , pp. 58-68
    • Durnford, D.G.1    Deane, J.A.2    Tan, S.3    McFadden, G.I.4    Gantt, E.5
  • 69
    • 17144396375 scopus 로고    scopus 로고
    • Isolation of a novel carotenoid-rich protein in Cyanophora paradoxa that is immunologically related to the light-harvesting complexes of photosynthetic eukaryotes
    • Rissler HM, Durnford DG (2005) Isolation of a novel carotenoid-rich protein in Cyanophora paradoxa that is immunologically related to the light-harvesting complexes of photosynthetic eukaryotes. Plant Cell Physiol 46: 416-424.
    • (2005) Plant Cell Physiol , vol.46 , pp. 416-424
    • Rissler, H.M.1    Durnford, D.G.2
  • 70
    • 0032268191 scopus 로고    scopus 로고
    • Distribution and nomenclature of protein-coding genes in 12 sequenced chloroplast genomes
    • Stoebe B, Martin W, Kowallik KV (1998) Distribution and nomenclature of protein-coding genes in 12 sequenced chloroplast genomes. Plant Mol Biol Rep 16: 243-255.
    • (1998) Plant Mol Biol Rep , vol.16 , pp. 243-255
    • Stoebe, B.1    Martin, W.2    Kowallik, K.V.3
  • 71
    • 0000079196 scopus 로고    scopus 로고
    • The complete sequence of the Cyanophora paradoxa cyanelle genome (Glaucocystophyceae)
    • Loffelhardt W, Bohnert HJ, Bryant DA (1997) The complete sequence of the Cyanophora paradoxa cyanelle genome (Glaucocystophyceae). Plant Syst Evol. pp 149-162.
    • (1997) Plant Syst Evol , pp. 149-162
    • Loffelhardt, W.1    Bohnert, H.J.2    Bryant, D.A.3
  • 73
    • 30744433373 scopus 로고    scopus 로고
    • The largest subunit of RNA polymerase II from the Glaucocystophyta: Functional constraint and short-branch exclusion in deep eukaryotic phylogeny
    • Stiller JW, Harrell L (2005) The largest subunit of RNA polymerase II from the Glaucocystophyta: functional constraint and short-branch exclusion in deep eukaryotic phylogeny. BMC Evol Biol 5: 71.
    • (2005) BMC Evol Biol , vol.5 , pp. 71
    • Stiller, J.W.1    Harrell, L.2
  • 74
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf SL, Roger AJ, Wenk-Siefert I, Doolittle WF (2000) A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290: 972-977.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 75
    • 0033197505 scopus 로고    scopus 로고
    • Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea: Cyanobacterial introns and shared ancestry of red and green algae
    • Burger G, Saint-Louis D, Gray MW, Lang BF (1999) Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea: cyanobacterial introns and shared ancestry of red and green algae. Plant Cell 11: 1675-1694.
    • (1999) Plant Cell , vol.11 , pp. 1675-1694
    • Burger, G.1    Saint-Louis, D.2    Gray, M.W.3    Lang, B.F.4
  • 76
    • 31044432650 scopus 로고    scopus 로고
    • Complete mitochondrial genomes of the three brown algae (Heterokonta: Phaeophyceae) Dictyota dichotoma, Fucus vesiculosus and Desmarestia viridis
    • Secq MPO, Goer SL, Stam WT, Olsen JL (2006) Complete mitochondrial genomes of the three brown algae (Heterokonta: Phaeophyceae) Dictyota dichotoma, Fucus vesiculosus and Desmarestia viridis. Curr Genet 49: 47-58.
    • (2006) Curr Genet , vol.49 , pp. 47-58
    • Secq, M.P.O.1    Goer, S.L.2    Stam, W.T.3    Olsen, J.L.4
  • 77
    • 44449107533 scopus 로고    scopus 로고
    • Complete sequence and analysis of the mitochondrial genome of Hemiselmes andersenii CCMP644 (Cryptophyceae)
    • Kim E, Lane CE, Curtis BA, Kozera C, Bowman S, et al. (2008) Complete sequence and analysis of the mitochondrial genome of Hemiselmes andersenii CCMP644 (Cryptophyceae). BMC Genomics 9: 215.
    • (2008) BMC Genomics , vol.9 , pp. 215
    • Kim, E.1    Lane, C.E.2    Curtis, B.A.3    Kozera, C.4    Bowman, S.5
  • 78
    • 0019485803 scopus 로고
    • The Chloroplasts of some algal groups may have evolved from endosymbiotic eukaryotic algae
    • Gibbs SP (1981) The Chloroplasts of some algal groups may have evolved from endosymbiotic eukaryotic algae. Ann N Y Acad Sci 361: 193-208.
    • (1981) Ann N Y Acad Sci , vol.361 , pp. 193-208
    • Gibbs, S.P.1
  • 79
    • 0034072187 scopus 로고    scopus 로고
    • Solar-powered sea slugs. Mollusc/ algal chloroplast symbiosis
    • Rumpho ME, Summer EJ, Manhart JR (2000) Solar-powered sea slugs. Mollusc/ algal chloroplast symbiosis. Plant Physiol 123: 29-38.
    • (2000) Plant Physiol , vol.123 , pp. 29-38
    • Rumpho, M.E.1    Summer, E.J.2    Manhart, J.R.3
  • 80
    • 0042666874 scopus 로고    scopus 로고
    • Morphostasis in alveolate evolution
    • Leander BS, Keeling PJ (2003) Morphostasis in alveolate evolution. Trends Ecol Evol 18: 395-402.
    • (2003) Trends Ecol Evol , vol.18 , pp. 395-402
    • Leander, B.S.1    Keeling, P.J.2
  • 81
    • 0035998873 scopus 로고    scopus 로고
    • A new class of the stramenopiles, Placididea classis nova: Description of Placidia cafeteriopsis gen. et sp nov
    • Moriya M, Nakayama T, Inouye I (2002) A new class of the stramenopiles, Placididea classis nova: description of Placidia cafeteriopsis gen. et sp nov. Protist 153: 143-156.
    • (2002) Protist , vol.153 , pp. 143-156
    • Moriya, M.1    Nakayama, T.2    Inouye, I.3
  • 82
    • 50349100532 scopus 로고    scopus 로고
    • Kim E, Archibald JM (2008) Diversity and evolution of plastids and their genomes. In: Sandelius AS, Aronsson H, eds (2008) The Chloroplast: Interactions with the environment. Heidelberg: Springer. pp In press.
    • Kim E, Archibald JM (2008) Diversity and evolution of plastids and their genomes. In: Sandelius AS, Aronsson H, eds (2008) The Chloroplast: Interactions with the environment. Heidelberg: Springer. pp In press.
  • 83
    • 0344440735 scopus 로고    scopus 로고
    • Nucleus-encoded, plastid-targeted glyceralde-hyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids
    • Harper JT, Keeling PJ (2003) Nucleus-encoded, plastid-targeted glyceralde-hyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol Biol Evol 20: 1730-1735.
    • (2003) Mol Biol Evol , vol.20 , pp. 1730-1735
    • Harper, J.T.1    Keeling, P.J.2
  • 84
    • 10844223848 scopus 로고    scopus 로고
    • Phylogeny of nuclear-encoded plastid-targeted GAPDH gene supports separate origins for the peridinin- and the fucoxanthin derivative-containing plastids of dinoflagellates
    • Takishita K, Ishida KI, Maruyama T (2004) Phylogeny of nuclear-encoded plastid-targeted GAPDH gene supports separate origins for the peridinin- and the fucoxanthin derivative-containing plastids of dinoflagellates. Protist 155: 447-458.
    • (2004) Protist , vol.155 , pp. 447-458
    • Takishita, K.1    Ishida, K.I.2    Maruyama, T.3
  • 85
    • 40649100519 scopus 로고    scopus 로고
    • Origins of plastids and glyceraldehyde-3-phosphate dehydrogenase genes in the green-colored dinoflagellate Lepidodinium chlorophorum
    • Takishita K, Kawachi M, Noel MH, Matsumoto T, Kakizoe N, et al. (2008) Origins of plastids and glyceraldehyde-3-phosphate dehydrogenase genes in the green-colored dinoflagellate Lepidodinium chlorophorum. Gene 410: 26-36.
    • (2008) Gene , vol.410 , pp. 26-36
    • Takishita, K.1    Kawachi, M.2    Noel, M.H.3    Matsumoto, T.4    Kakizoe, N.5
  • 86
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • Martin W, Rujan T, Richly E, Hansen A, Cornelsen S, et al. (2002) Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci U S A 99: 12246-12251.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3    Hansen, A.4    Cornelsen, S.5
  • 87
    • 0037572303 scopus 로고    scopus 로고
    • Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae
    • Ohta N, Matsuzaki M, Misumi O, Miyagishima S, Nozaki H, et al. (2003) Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae. DNA Res 10: 67-77.
    • (2003) DNA Res , vol.10 , pp. 67-77
    • Ohta, N.1    Matsuzaki, M.2    Misumi, O.3    Miyagishima, S.4    Nozaki, H.5
  • 88
    • 23944527127 scopus 로고    scopus 로고
    • Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages
    • Bachvaroff TR, Puerta MVS, Delwiche CF (2005) Chlorophyll c-containing plastid relationships based on analyses of a multigene data set with all four chromalveolate lineages. Mol Biol Evol 22: 1772-1782.
    • (2005) Mol Biol Evol , vol.22 , pp. 1772-1782
    • Bachvaroff, T.R.1    Puerta, M.V.S.2    Delwiche, C.F.3
  • 89
    • 33845510737 scopus 로고    scopus 로고
    • Did the peridinin plastid evolve through tertiary endosymbiosis? A hypothesis
    • Bodyl A, Moszczynski K (2006) Did the peridinin plastid evolve through tertiary endosymbiosis? A hypothesis. Eur J Phycol 41: 435-448.
    • (2006) Eur J Phycol , vol.41 , pp. 435-448
    • Bodyl, A.1    Moszczynski, K.2
  • 90
    • 84989617446 scopus 로고
    • Katablepharis ovalis, a colorless flagellate with interesting cytological characteristics
    • Lee RE, Kugrens P (1991) Katablepharis ovalis, a colorless flagellate with interesting cytological characteristics. J Phycol 27: 505-513.
    • (1991) J Phycol , vol.27 , pp. 505-513
    • Lee, R.E.1    Kugrens, P.2
  • 91
    • 0000561973 scopus 로고
    • The structure of the flagellar apparatus of two strains of Katablepharis (Cryptophyceae)
    • Lee RE, Kugrens P, Mylnikov AP (1992) The structure of the flagellar apparatus of two strains of Katablepharis (Cryptophyceae). Br Phycol J 27: 369-380.
    • (1992) Br Phycol J , vol.27 , pp. 369-380
    • Lee, R.E.1    Kugrens, P.2    Mylnikov, A.P.3
  • 92
    • 0033103623 scopus 로고    scopus 로고
    • Systematics of the enigmatic kathablepharids, including EM characterization of the type species, Kathablepharis phoenikoston, and new observations on K. remigera com. nov
    • Clay B, Kugrens P (1999) Systematics of the enigmatic kathablepharids, including EM characterization of the type species, Kathablepharis phoenikoston, and new observations on K. remigera com. nov. Protist 150: 43-59.
    • (1999) Protist , vol.150 , pp. 43-59
    • Clay, B.1    Kugrens, P.2
  • 93
    • 10444243528 scopus 로고
    • Scale biogenesis in the green alga, Mesostigma viride
    • Domozych DS, Wells B, Shaw PJ (1992) Scale biogenesis in the green alga, Mesostigma viride. Protoplasma 167: 19-32.
    • (1992) Protoplasma , vol.167 , pp. 19-32
    • Domozych, D.S.1    Wells, B.2    Shaw, P.J.3
  • 94
    • 0019731454 scopus 로고
    • Development of the cell wall in Tetraselmis: Role of the Golgi apparatus and extracellular wall assembly
    • Domozych DS, Stewart KD, Mattox KR (1981) Development of the cell wall in Tetraselmis: role of the Golgi apparatus and extracellular wall assembly. J Cell Sci 52: 351-371.
    • (1981) J Cell Sci , vol.52 , pp. 351-371
    • Domozych, D.S.1    Stewart, K.D.2    Mattox, K.R.3
  • 95
    • 0031794743 scopus 로고    scopus 로고
    • Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes
    • Gupta RS (1998) Protein phylogenies and signature sequences: a reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes. Microbiol Mol Biol Rev 62: 1435-1491.
    • (1998) Microbiol Mol Biol Rev , vol.62 , pp. 1435-1491
    • Gupta, R.S.1
  • 98
    • 4644327551 scopus 로고    scopus 로고
    • Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: Dinoflagellate plastid origins as a case study
    • Inagaki Y, Simpson AGB, Dacks JB, Roger AJ (2004) Phylogenetic artifacts can be caused by leucine, serine, and arginine codon usage heterogeneity: dinoflagellate plastid origins as a case study. Syst Biol 53: 582-593.
    • (2004) Syst Biol , vol.53 , pp. 582-593
    • Inagaki, Y.1    Simpson, A.G.B.2    Dacks, J.B.3    Roger, A.J.4
  • 99
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 100
    • 34248159030 scopus 로고    scopus 로고
    • Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model
    • Lartillot N, Brinkmann H, Philippe H (2007) Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model. BMC Evol Biol 7: S4.
    • (2007) BMC Evol Biol , vol.7
    • Lartillot, N.1    Brinkmann, H.2    Philippe, H.3
  • 101
    • 18744382506 scopus 로고    scopus 로고
    • ProtTest: Selection of best-fit models of protein evolution
    • Abascal F, Zardoya R, Posada D (2005) ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21: 2104-2105.
    • (2005) Bioinformatics , vol.21 , pp. 2104-2105
    • Abascal, F.1    Zardoya, R.2    Posada, D.3
  • 102
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt HA, Strimmer K, Vingron M, von Haeseler A (2002) TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18: 502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 103
    • 0036943052 scopus 로고    scopus 로고
    • Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle
    • Desper R, Gascuel O (2002) Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle. J Comput Biol 9: 687-705.
    • (2002) J Comput Biol , vol.9 , pp. 687-705
    • Desper, R.1    Gascuel, O.2
  • 104
    • 50349084848 scopus 로고    scopus 로고
    • Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) version 3.6. Seattle: Department of Genome Sciences, University of Washington
    • Felsenstein J (2005) PHYLIP (Phylogeny Inference Package) version 3.6. Seattle: Department of Genome Sciences, University of Washington.


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