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Volumn 30, Issue , 1996, Pages 371-403

Phylogenetic analysis in molecular evolutionary genetics

Author keywords

ancestral proteins; four cluster analysis; linearized trees; molecular phylogeny; tree building methods

Indexed keywords

AMINO ACID SEQUENCE; COMPUTER SIMULATION; DNA SEQUENCE; GENE FREQUENCY; GENETIC DISTANCE; HUMAN; MAXIMUM LIKELIHOOD METHOD; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROBABILITY; REVIEW;

EID: 0030458552     PISSN: 00664197     EISSN: None     Source Type: Book Series    
DOI: 10.1146/annurev.genet.30.1.371     Document Type: Review
Times cited : (229)

References (159)
  • 2
    • 0030207565 scopus 로고    scopus 로고
    • Instability of quartet analyses of molecular sequence data by the maximum likelihood method: The cetacea/artiodactyla relationships
    • Adachi J, Hasegawa M. 1996. Instability of quartet analyses of molecular sequence data by the maximum likelihood method: the cetacea/artiodactyla relationships. Mol. Phyl. Evol. 6:72-76
    • (1996) Mol. Phyl. Evol. , vol.6 , pp. 72-76
    • Adachi, J.1    Hasegawa, M.2
  • 3
    • 0029974748 scopus 로고    scopus 로고
    • Model of amino acid substitution in proteins encoded by mitochondrial DNA
    • Adachi J, Hasegawa M. 1996. Model of amino acid substitution in proteins encoded by mitochondrial DNA. J. Mol. Evol. 42:459-68
    • (1996) J. Mol. Evol. , vol.42 , pp. 459-468
    • Adachi, J.1    Hasegawa, M.2
  • 5
    • 0027138675 scopus 로고
    • Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins
    • Baldauf SL, Palmer JD. 1993. Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins. Proc. Natl. Acad. Sci. USA 90:11558-62
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 11558-11562
    • Baldauf, S.L.1    Palmer, J.D.2
  • 6
    • 0023359361 scopus 로고
    • Asynchronous distance between homologous DNA sequences
    • Barry D, Hartigan JA. 1987. Asynchronous distance between homologous DNA sequences. Biometrics 43:261-76
    • (1987) Biometrics , vol.43 , pp. 261-276
    • Barry, D.1    Hartigan, J.A.2
  • 7
    • 0020366353 scopus 로고
    • Computer comparison of new and existing criteria for constructing evolutionary trees from sequence data
    • Blanken RL, Klotz LC, Hinnebusch AG. 1982. Computer comparison of new and existing criteria for constructing evolutionary trees from sequence data. J. Mol. Evol. 19:9-19
    • (1982) J. Mol. Evol. , vol.19 , pp. 9-19
    • Blanken, R.L.1    Klotz, L.C.2    Hinnebusch, A.G.3
  • 9
    • 0026005922 scopus 로고
    • Use of the method of generalized least squares in reconstructing phylogenies from sequence data
    • Bulmer M. 1991. Use of the method of generalized least squares in reconstructing phylogenies from sequence data. Mol. Biol. Evol. 8:868-83
    • (1991) Mol. Biol. Evol. , vol.8 , pp. 868-883
    • Bulmer, M.1
  • 10
    • 8044241329 scopus 로고    scopus 로고
    • Deleted in proof
    • Deleted in proof
  • 11
    • 0028061428 scopus 로고
    • Eutherian phylogeny as inferred from mitochondrial DNA sequence data
    • Cao Y, Adachi J, Hasegawa M. 1994. Eutherian phylogeny as inferred from mitochondrial DNA sequence data. Jpn. J. Genet. 69:455-72
    • (1994) Jpn. J. Genet. , vol.69 , pp. 455-472
    • Cao, Y.1    Adachi, J.2    Hasegawa, M.3
  • 12
    • 0028172520 scopus 로고
    • Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: Instability of a tree based on a single gene
    • Cao Y, Adachi J, Janke A, Paabo S, Hasegawa M. 1994. Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: instability of a tree based on a single gene. J. Mol. Evol. 39:519-27
    • (1994) J. Mol. Evol. , vol.39 , pp. 519-527
    • Cao, Y.1    Adachi, J.2    Janke, A.3    Paabo, S.4    Hasegawa, M.5
  • 13
    • 0000075010 scopus 로고
    • Analysis of human evolution
    • Genetics Today, ed. SJ Geerts, The Hague, The Netherlands: Pergamon
    • Cavalli-Sforza LL, Edwards AWF. 1964. Analysis of human evolution. In Genetics Today, ed. SJ Geerts, pp. 923-33. Proc. Int. Congr. Genet., 11th. The Hague, The Netherlands: Pergamon
    • (1964) Proc. Int. Congr. Genet., 11th. , pp. 923-933
    • Cavalli-Sforza, L.L.1    Edwards, A.W.F.2
  • 14
    • 0014082615 scopus 로고
    • Phylogenetic analysis: Models and estimation procedures
    • Cavalli-Sforza LL, Edwards AWF. 1967. Phylogenetic analysis: models and estimation procedures. Am. J. Hum. Genet. 19:122-257
    • (1967) Am. J. Hum. Genet. , vol.19 , pp. 122-257
    • Cavalli-Sforza, L.L.1    Edwards, A.W.F.2
  • 18
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • ed. MO Dayhoff, Washington, DC: Natl. Biomed. Res. Found.
    • Dayhoff MO, Schwartz RM, Orcutt BC. 1978. A model of evolutionary change in proteins. In Atlas of Protein Sequence and Structure, ed. MO Dayhoff, pp. 345-52. Washington, DC: Natl. Biomed. Res. Found.
    • (1978) Atlas of Protein Sequence and Structure , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 19
    • 0026559592 scopus 로고
    • The consistency of several phytogeny-inference methods under varying evolutionary rates
    • DeBry RW. 1992. The consistency of several phytogeny-inference methods under varying evolutionary rates. Mol. Biol. Evol. 9:537-51
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 537-551
    • DeBry, R.W.1
  • 20
    • 0030023247 scopus 로고    scopus 로고
    • Determining divergence times of the major kingdoms of living organism with a protein clock
    • Doolittle RF, Feng D-F, Tsang S, Cho G, Little E. 1996. Determining divergence times of the major kingdoms of living organism with a protein clock. Science 271:470-77
    • (1996) Science , vol.271 , pp. 470-477
    • Doolittle, R.F.1    Feng, D.-F.2    Tsang, S.3    Cho, G.4    Little, E.5
  • 25
    • 0002224909 scopus 로고
    • Punctuated equilibria: An alternative to phyletic gradualism
    • ed. TJM Schopf, San Francisco: Freeman
    • Eldredge N, Gould SJ. 1972. Punctuated equilibria: an alternative to phyletic gradualism. In Models in Paleobiology, ed. TJM Schopf, pp. 82-115. San Francisco: Freeman
    • (1972) Models in Paleobiology , pp. 82-115
    • Eldredge, N.1    Gould, S.J.2
  • 26
    • 84963028421 scopus 로고
    • A successive approximations approach to character weighting
    • Farris JS. 1969. A successive approximations approach to character weighting. Syst. Zool. 18:374-85
    • (1969) Syst. Zool. , vol.18 , pp. 374-385
    • Farris, J.S.1
  • 27
    • 84959798530 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27:401-10
    • (1978) Syst. Zool. , vol.27 , pp. 401-410
    • Felsenstein, J.1
  • 28
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:368-76
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 29
    • 0021581577 scopus 로고
    • Distance methods for inferring phytogenies: A justification
    • Felsenstein J. 1984. Distance methods for inferring phytogenies: a justification. Evolution 38:16-24
    • (1984) Evolution , vol.38 , pp. 16-24
    • Felsenstein, J.1
  • 30
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-91
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 31
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: Inference and reliability
    • Felsenstein J. 1988. Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22:521-65
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 521-565
    • Felsenstein, J.1
  • 33
    • 0030034795 scopus 로고    scopus 로고
    • A hidden Markov model approach to variation among sites in rate of evolution
    • Felsenstein J, Churchill GA. 1996. A hidden Markov model approach to variation among sites in rate of evolution. Mol. Biol. Evol. 13:93-104
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 93-104
    • Felsenstein, J.1    Churchill, G.A.2
  • 34
    • 0023783671 scopus 로고
    • MHC polymorphism pre-dating speciation
    • Figueroa F, Gunther E, Klein J. 1988. MHC polymorphism pre-dating speciation. Nature 335:265-67
    • (1988) Nature , vol.335 , pp. 265-267
    • Figueroa, F.1    Gunther, E.2    Klein, J.3
  • 35
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • Fitch WM. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Sys. Zool. 20:406-16
    • (1971) Sys. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 36
    • 0001917356 scopus 로고
    • Molecular evolutionary clocks
    • ed. FJ Ayala, Sunderland, MA: Sinauer
    • Fitch WM. 1976. Molecular evolutionary clocks. In Molecular Evolution, ed. FJ Ayala, pp. 160-78. Sunderland, MA: Sinauer
    • (1976) Molecular Evolution , pp. 160-178
    • Fitch, W.M.1
  • 37
    • 0014211361 scopus 로고
    • Construction of phylogenetic trees
    • Fitch WM, Margoliash E. 1967. Construction of phylogenetic trees. Science 155:279-84
    • (1967) Science , vol.155 , pp. 279-284
    • Fitch, W.M.1    Margoliash, E.2
  • 38
    • 0002212559 scopus 로고
    • Weighted parsimony: Does it work?
    • ed. MM Miyamoto, J Cracraft, New York, NY: Oxford Univ. Press
    • Fitch WM, Ye J. 1991. Weighted parsimony: Does it work? In Phylogenetic Analysis of DNA Sequences, ed. MM Miyamoto, J Cracraft, pp. 147-54. New York, NY: Oxford Univ. Press
    • (1991) Phylogenetic Analysis of DNA Sequences , pp. 147-154
    • Fitch, W.M.1    Ye, J.2
  • 39
    • 0028035267 scopus 로고
    • A note on Sattath and Tversky's, Saitou and Nei's, and Studier and Keppler's algorithms for inferring phylogenies from evolutionary distances
    • Gascuel O. 1994. A note on Sattath and Tversky's, Saitou and Nei's, and Studier and Keppler's algorithms for inferring phylogenies from evolutionary distances. Mol. Biol. Evol. 11:961-63
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 961-963
    • Gascuel, O.1
  • 40
    • 0028887457 scopus 로고
    • Success of maximum likelihood phylogeny inference in the four-taxon case
    • Gaut BS, Lewis PO. 1995. Success of maximum likelihood phylogeny inference in the four-taxon case. Mol. Biol. Evol. 12:152-62
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 152-162
    • Gaut, B.S.1    Lewis, P.O.2
  • 41
    • 0028888465 scopus 로고
    • Protein-based phylogenies support a chimeric origin of the eukaryotic genome
    • Golding GB, Gupta R. 1995. Protein-based phylogenies support a chimeric origin of the eukaryotic genome. Mol. Biol. Evol. 12:1-6
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 1-6
    • Golding, G.B.1    Gupta, R.2
  • 42
    • 0027526039 scopus 로고
    • Statistical tests of models of DNA substitution
    • Goldman N. 1993. Statistical tests of models of DNA substitution. J. Mol. Evol. 36:182-98
    • (1993) J. Mol. Evol. , vol.36 , pp. 182-198
    • Goldman, N.1
  • 43
    • 0028452009 scopus 로고
    • Least squares estimation of molecular distance - Noise abatement in phylogenetic reconstruction
    • Goldstein DB, Pollock DD. 1994. Least squares estimation of molecular distance - noise abatement in phylogenetic reconstruction. Theor. Popul. Biol. 45:219-26
    • (1994) Theor. Popul. Biol. , vol.45 , pp. 219-226
    • Goldstein, D.B.1    Pollock, D.D.2
  • 45
    • 0024637355 scopus 로고
    • Molecular phylogeny of the kingdoms animalia, plantae, and fungi
    • Gouy M, Li W-H. 1989. Molecular phylogeny of the kingdoms animalia, plantae, and fungi. Mol. Biol. Evol. 6:109-22
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 109-122
    • Gouy, M.1    Li, W.-H.2
  • 46
    • 0028344493 scopus 로고
    • Cloning of Giardia lamblia heat shock protein HSP70 homologs: Implications regarding origin of eukaryotic cells and of endoplasmic reticulum
    • Gupta RS, Aitken K, Mizied F, Singh B. 1994. Cloning of Giardia lamblia heat shock protein HSP70 homologs: implications regarding origin of eukaryotic cells and of endoplasmic reticulum. Proc. Natl. Acad. Sci. USA 91:2895-99
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 2895-2899
    • Gupta, R.S.1    Aitken, K.2    Mizied, F.3    Singh, B.4
  • 47
    • 0002329356 scopus 로고
    • Minimum evolution fits to a given tree
    • Hartigan JA. 1973. Minimum evolution fits to a given tree. Biometrics 29:53-65
    • (1973) Biometrics , vol.29 , pp. 53-65
    • Hartigan, J.A.1
  • 48
    • 0027565033 scopus 로고
    • Relative efficiencies of the maximum likelihood, maximum-parsimony, and neighbor-joining methods for estimating protein phylogeny
    • Hasegawa M, Fujiwara M. 1993. Relative efficiencies of the maximum likelihood, maximum-parsimony, and neighbor-joining methods for estimating protein phylogeny. Mol. Phyl. Evol. 2:1-5
    • (1993) Mol. Phyl. Evol. , vol.2 , pp. 1-5
    • Hasegawa, M.1    Fujiwara, M.2
  • 49
    • 0027463557 scopus 로고
    • Ribosomal RNA trees misleading?
    • Hasegawa M, Hashimoto T. 1993. Ribosomal RNA trees misleading? Nature 361:23
    • (1993) Nature , vol.361 , pp. 23
    • Hasegawa, M.1    Hashimoto, T.2
  • 50
    • 0025873443 scopus 로고
    • On the maximum likelihood method in molecular phylogenetics
    • Hasegawa M, Kishino H, Saitou N. 1991. On the maximum likelihood method in molecular phylogenetics. J. Mol. Evol. 32:443-45
    • (1991) J. Mol. Evol. , vol.32 , pp. 443-445
    • Hasegawa, M.1    Kishino, H.2    Saitou, N.3
  • 51
    • 0022376704 scopus 로고
    • Dating the human-ape splitting by a molecular clock of mitochondrial DNA
    • Hasegawa M, Kishino H, Yano T. 1985. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-74
    • (1985) J. Mol. Evol. , vol.22 , pp. 160-174
    • Hasegawa, M.1    Kishino, H.2    Yano, T.3
  • 52
    • 0029669270 scopus 로고    scopus 로고
    • Continental breakup and ordinal diversification of birds and mammals
    • Hedges SB, Parker PH, Sibley CG, Kumar S. 1996. Continental breakup and ordinal diversification of birds and mammals. Nature 381:226-29
    • (1996) Nature , vol.381 , pp. 226-229
    • Hedges, S.B.1    Parker, P.H.2    Sibley, C.G.3    Kumar, S.4
  • 53
    • 0000662336 scopus 로고
    • Hadamard conjugation: A versatile tool for modelling nucleotide sequence evolution
    • Hendy MD, Charleston MA. 1993. Hadamard conjugation: a versatile tool for modelling nucleotide sequence evolution. NZ J. Bot. 31:231-37
    • (1993) NZ J. Bot. , vol.31 , pp. 231-237
    • Hendy, M.D.1    Charleston, M.A.2
  • 54
    • 0020286044 scopus 로고
    • Branch and bound algorithms to determine minimal evolutionary trees
    • Hendy MD, Penny D. 1982. Branch and bound algorithms to determine minimal evolutionary trees. Math. Biosci. 59: 277-90
    • (1982) Math. Biosci. , vol.59 , pp. 277-290
    • Hendy, M.D.1    Penny, D.2
  • 55
    • 0000084234 scopus 로고
    • A framework for the quantitative study of evolutionary trees
    • Hendy MD, Penny D. 1989. A framework for the quantitative study of evolutionary trees. Syst. Zool. 38:297-309
    • (1989) Syst. Zool. , vol.38 , pp. 297-309
    • Hendy, M.D.1    Penny, D.2
  • 57
    • 12044253190 scopus 로고
    • An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
    • Hillis DM, Bull JJ. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:182-92
    • (1993) Syst. Biol. , vol.42 , pp. 182-192
    • Hillis, D.M.1    Bull, J.J.2
  • 60
    • 11944268967 scopus 로고
    • The performance of phylogenetic methods in simulation
    • Huelsenbeck JP. 1995. The performance of phylogenetic methods in simulation. Syst. Biol. 44:17-48
    • (1995) Syst. Biol. , vol.44 , pp. 17-48
    • Huelsenbeck, J.P.1
  • 61
    • 0029113744 scopus 로고
    • The robustness of two phylogenetic methods: Four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining
    • Huelsenbeck JP. 1995. The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining. Mol. Biol. Evol. 12:843-49
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 843-849
    • Huelsenbeck, J.P.1
  • 62
    • 12044255023 scopus 로고
    • Success of phylogenetic methods in the four-taxon case
    • Huelsenbeck JP, Hillis DM. 1993. Success of phylogenetic methods in the four-taxon case. Syst. Biol. 42:247-64
    • (1993) Syst. Biol. , vol.42 , pp. 247-264
    • Huelsenbeck, J.P.1    Hillis, D.M.2
  • 63
    • 0040771786 scopus 로고
    • Nucleotide substitution at major histocompatibility complex II loci: Evidence for overdominant selection
    • Hughes AL, Nei M. 1989. Nucleotide substitution at major histocompatibility complex II loci: evidence for overdominant selection. Proc. Natl. Acad. Sci. USA 86:958-62
    • (1989) Proc. Natl. Acad. Sci. USA , vol.86 , pp. 958-962
    • Hughes, A.L.1    Nei, M.2
  • 64
    • 0028895702 scopus 로고
    • Reconstructing the evolutionary history of the artiodactyl ribonuclcase superfamily
    • Jermann RM, Opitz JG, Stackhouse J, Benner SA. 1995. Reconstructing the evolutionary history of the artiodactyl ribonuclcase superfamily. Nature 374:57-59
    • (1995) Nature , vol.374 , pp. 57-59
    • Jermann, R.M.1    Opitz, J.G.2    Stackhouse, J.3    Benner, S.A.4
  • 65
    • 0025061094 scopus 로고
    • Limitations of the evolutionary parsimony method of phylogenetic analysis
    • Jin L, Nei M. 1990. Limitations of the evolutionary parsimony method of phylogenetic analysis. Mol. Biol. Evol. 7:82-102
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 82-102
    • Jin, L.1    Nei, M.2
  • 66
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones DT, Taylor WR, Thornton JM. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:275-82
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 67
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • ed. HN Munro, New York: Academic
    • Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In Mammalian Protein Metabolism, ed. HN Munro, pp. 21-132. New York: Academic
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 68
    • 0028657609 scopus 로고
    • Archaebactrial genomes: Eubacterial form and eukaryotic content
    • Keeling PJ, Charlebois RL, Doolittle WF. 1994. Archaebactrial genomes: eubacterial form and eukaryotic content. Curr. Biol. 4:816-22
    • (1994) Curr. Biol. , vol.4 , pp. 816-822
    • Keeling, P.J.1    Charlebois, R.L.2    Doolittle, W.F.3
  • 70
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16: 111-20
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 71
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topology from DNA sequence data, and the branching order in Hominoidea
    • Kishino H, Hasegawa M. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topology from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:170-79
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 72
    • 0025181359 scopus 로고
    • Maximum likelihood inference of protein phylogeny and the origin of chloroplasts
    • Kishino H, Miyata T, Hasegawa M. 1990. Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J. Mol. Evol. 31:151-60
    • (1990) J. Mol. Evol. , vol.31 , pp. 151-160
    • Kishino, H.1    Miyata, T.2    Hasegawa, M.3
  • 73
    • 0002538268 scopus 로고
    • Sequence evolution of mitochondrial DNA in humans and chimpanzees: Control region and a protein-coding region
    • ed. S Osawa, T Honjo, New York: Springer-Verlag
    • Kocher TD, Wilson AC. 1991. Sequence evolution of mitochondrial DNA in humans and chimpanzees: control region and a protein-coding region. In Evolution of Life, ed. S Osawa, T Honjo, pp. 391-413. New York: Springer-Verlag
    • (1991) Evolution of Life , pp. 391-413
    • Kocher, T.D.1    Wilson, A.C.2
  • 74
    • 0028177080 scopus 로고
    • A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
    • Kuhner MK, Felsenstein J. 1994. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11:459-68
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 459-468
    • Kuhner, M.K.1    Felsenstein, J.2
  • 76
    • 0029960344 scopus 로고    scopus 로고
    • Patterns of nucleotide substitution in mitochondrial protein coding genes of vertebrates
    • Kumar S. 1996. Patterns of nucleotide substitution in mitochondrial protein coding genes of vertebrates. Genetics 143:537-48
    • (1996) Genetics , vol.143 , pp. 537-548
    • Kumar, S.1
  • 77
    • 0029917260 scopus 로고    scopus 로고
    • A stepwise algorithm for finding minimum evolution trees
    • Kumar S. 1996. A stepwise algorithm for finding minimum evolution trees. Mol. Biol. Evol. 13:584-93
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 584-593
    • Kumar, S.1
  • 78
    • 0029876868 scopus 로고    scopus 로고
    • Evolutionary relationships of eukaryotic kingdoms
    • Kumar S, Rzhetsky A. 1996. Evolutionary relationships of eukaryotic kingdoms. J. Mol. Evol. 42:183-93
    • (1996) J. Mol. Evol. , vol.42 , pp. 183-193
    • Kumar, S.1    Rzhetsky, A.2
  • 80
    • 8044222530 scopus 로고    scopus 로고
    • Phylogenetic utility of mitochondrial transfer RNA genes for deep divergence in animals
    • Kumazawa Y, Nishida M. 1996. Phylogenetic utility of mitochondrial transfer RNA genes for deep divergence in animals. See Ref. 90a, pp. 23-35
    • (1996) Current Topics on Molecular Evolution , pp. 23-35
    • Kumazawa, Y.1    Nishida, M.2
  • 81
    • 0024690185 scopus 로고
    • A statistical test of phylogenies estimated from sequence data
    • Li W-H. 1989. A statistical test of phylogenies estimated from sequence data. Mol. Biol. Evol. 6:424-35
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 424-435
    • Li, W.-H.1
  • 82
    • 0027759230 scopus 로고
    • So, what about the molecular clock hypothesis?
    • Li W-H. 1993. So, what about the molecular clock hypothesis? Curr. Opin. Genet. Dev. 3:396-901
    • (1993) Curr. Opin. Genet. Dev. , vol.3 , pp. 396-901
    • Li, W.-H.1
  • 83
    • 0001590039 scopus 로고
    • Statistical methods for testing phylogenies
    • ed. MM Miyamoto, J Cracraft, New York: Oxford Univ. Press
    • Li W-H, Guoy M. 1991. Statistical methods for testing phylogenies. In Phylogenetic Analysis of DNA Sequences, ed. MM Miyamoto, J Cracraft, pp. 249-77. New York: Oxford Univ. Press
    • (1991) Phylogenetic Analysis of DNA Sequences , pp. 249-277
    • Li, W.-H.1    Guoy, M.2
  • 84
    • 11944272095 scopus 로고
    • Statistical tests of DNA phylogenies
    • Li W-H, Zharkikh A. 1995. Statistical tests of DNA phylogenies. Syst. Biol. 44:49-63
    • (1995) Syst. Biol. , vol.44 , pp. 49-63
    • Li, W.-H.1    Zharkikh, A.2
  • 85
    • 0029468058 scopus 로고
    • Calculating the probability distributions of ancestral states reconstructed by parsimony on phylogenetic trees
    • Maddison WP. 1995. Calculating the probability distributions of ancestral states reconstructed by parsimony on phylogenetic trees. Syst. Biol. 44:474-81
    • (1995) Syst. Biol. , vol.44 , pp. 474-481
    • Maddison, W.P.1
  • 87
    • 0026670564 scopus 로고
    • Testing for equality of evolutionary rates
    • Muse SV, Weir BS. 1992. Testing for equality of evolutionary rates. Genetics 132:269-76
    • (1992) Genetics , vol.132 , pp. 269-276
    • Muse, S.V.1    Weir, B.S.2
  • 89
    • 0001884732 scopus 로고
    • Relative efficiencies of different tree making methods for molecular data
    • ed. MM Miyamoto, JL Cracraft, Oxford: Oxford Univ. Press
    • Nei M. 1991. Relative efficiencies of different tree making methods for molecular data. In Recent Advances in Phylogenetic Studies of DNA Sequences, ed. MM Miyamoto, JL Cracraft, pp. 133-47. Oxford: Oxford Univ. Press
    • (1991) Recent Advances in Phylogenetic Studies of DNA Sequences , pp. 133-147
    • Nei, M.1
  • 90
    • 0021927430 scopus 로고
    • Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes
    • Nei M, Stephens JC, Saitou N. 1985. Methods for computing the standard errors of branching points in an evolutionary tree and their application to molecular data from humans and apes. Mol. Biol. Evol. 2:66-85
    • (1985) Mol. Biol. Evol. , vol.2 , pp. 66-85
    • Nei, M.1    Stephens, J.C.2    Saitou, N.3
  • 92
    • 0028925649 scopus 로고
    • Assessing molecular phylogenies
    • Nei M, Takezaki N, Sitnikova T. 1995. Assessing molecular phylogenies. Science 267:253-55
    • (1995) Science , vol.267 , pp. 253-255
    • Nei, M.1    Takezaki, N.2    Sitnikova, T.3
  • 93
    • 0027957393 scopus 로고
    • FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
    • Olsen GJ, Matsuda H, Hagstrom R, Overbeek R. 1994. FastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10:41-48
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 41-48
    • Olsen, G.J.1    Matsuda, H.2    Hagstrom, R.3    Overbeek, R.4
  • 95
    • 0002725360 scopus 로고
    • Chemical paleogenetics: Molecular "restoration studies" of extinct forms of life
    • Pauling L, Zuckerkandl E. 1963. Chemical paleogenetics: molecular "restoration studies" of extinct forms of life. Acta Chem. Scand. [B] 17:S9-16
    • (1963) Acta Chem. Scand. [B] , vol.17
    • Pauling, L.1    Zuckerkandl, E.2
  • 96
    • 0016704892 scopus 로고
    • Use of amino acid sequence data in phylogeny and evaluation of methods using computer simulation
    • Peacock D, Boulter D. 1975. Use of amino acid sequence data in phylogeny and evaluation of methods using computer simulation. J. Mol. Biol. 95:513-27
    • (1975) J. Mol. Biol. , vol.95 , pp. 513-527
    • Peacock, D.1    Boulter, D.2
  • 97
    • 0002393841 scopus 로고
    • The use of tree comparison metrics
    • Penny D, Hendy MD. 1985. The use of tree comparison metrics. Syst. Zool. 34:75-82
    • (1985) Syst. Zool. , vol.34 , pp. 75-82
    • Penny, D.1    Hendy, M.D.2
  • 98
    • 0029818407 scopus 로고    scopus 로고
    • Probability distribution of molecular evolutionary trees: A new method of phylogenetic inference
    • Rannala B, Yang Z. 1996. Probability distribution of molecular evolutionary trees: a new method of phylogenetic inference. J. Mol. Evol. 43:304-11
    • (1996) J. Mol. Evol. , vol.43 , pp. 304-311
    • Rannala, B.1    Yang, Z.2
  • 99
    • 0028913171 scopus 로고
    • Evolutionary analysis of picornavirus family
    • Rodrigo MJ, Dopazo J. 1995. Evolutionary analysis of picornavirus family. J. Mol. Evol. 40:362-271
    • (1995) J. Mol. Evol. , vol.40 , pp. 362-1271
    • Rodrigo, M.J.1    Dopazo, J.2
  • 100
    • 0028910659 scopus 로고
    • Molecular phylogeny and divergence times of drosophilid species
    • Russo CAM, Takezaki N, Nei M. 1995. Molecular phylogeny and divergence times of drosophilid species. Mol. Biol. Evol. 12:391-404
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 391-404
    • Russo, C.A.M.1    Takezaki, N.2    Nei, M.3
  • 101
    • 0030045281 scopus 로고    scopus 로고
    • Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny
    • Russo CAM, Takezaki N, Nei M. 1996. Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny. Mol. Biol. Evol. 13:525-36
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 525-536
    • Russo, C.A.M.1    Takezaki, N.2    Nei, M.3
  • 102
    • 0028795234 scopus 로고
    • Four-cluster analysis: A simple method to test phylogenetic hypotheses
    • Rzhetsky A, Kumar S, Nei M. 1995. Four-cluster analysis: a simple method to test phylogenetic hypotheses. Mol. Biol. Evol. 12:163-67
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 163-167
    • Rzhetsky, A.1    Kumar, S.2    Nei, M.3
  • 103
    • 0026660413 scopus 로고
    • A simple method for estimating and testing minimum-evolution trees
    • Rzhetsky A, Nei M. 1992. A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 9:945-67
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 945-967
    • Rzhetsky, A.1    Nei, M.2
  • 104
    • 0026466041 scopus 로고
    • Statistical properties of the ordinary least-squares, generalized least-squares and minimum-evolution methods of phylogenetic inference
    • Rzhetsky A, Nei M. 1992. Statistical properties of the ordinary least-squares, generalized least-squares and minimum-evolution methods of phylogenetic inference. Mol. Biol. Evol. 35:367-75
    • (1992) Mol. Biol. Evol. , vol.35 , pp. 367-375
    • Rzhetsky, A.1    Nei, M.2
  • 105
    • 0027185401 scopus 로고
    • Theoretical foundation of the minimum-evolution method of phylogenetic inference
    • Rzhetsky A, Nei M. 1993. Theoretical foundation of the minimum-evolution method of phylogenetic inference. Mol. Biol. Evol. 10:1073-95
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 1073-1095
    • Rzhetsky, A.1    Nei, M.2
  • 106
    • 0028129798 scopus 로고
    • METREE: A program package for inferring and testing minimum-evolution trees
    • Rzhetsky A, Nei M. 1994. METREE: a program package for inferring and testing minimum-evolution trees. Comput. Appl. Biosci. 10:409-12
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 409-412
    • Rzhetsky, A.1    Nei, M.2
  • 107
    • 0028230202 scopus 로고
    • Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites
    • Rzhetsky A, Nei M. 1994. Unbiased estimates of the number of nucleotide substitutions when substitution rate varies among different sites. J. Mol Evol. 38:295-99
    • (1994) J. Mol Evol. , vol.38 , pp. 295-299
    • Rzhetsky, A.1    Nei, M.2
  • 108
    • 0028813932 scopus 로고
    • Tests of applicability of several substitution models for DNA sequence data
    • Rzhetsky A, Nei M. 1995. Tests of applicability of several substitution models for DNA sequence data. Mol. Biol. Evol. 12:131-51
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 131-151
    • Rzhetsky, A.1    Nei, M.2
  • 110
    • 0023898050 scopus 로고
    • Property and efficiency of the maximum likelihood method for molecular phylogeny
    • Saitou N. 1988. Property and efficiency of the maximum likelihood method for molecular phylogeny. J. Mol. Evol. 27:261-73
    • (1988) J. Mol. Evol. , vol.27 , pp. 261-273
    • Saitou, N.1
  • 111
    • 0000329594 scopus 로고
    • Relative efficiencies of the Fitch-Margoliash, maximum-parsimony, maximum-likelihood, minimum-evolution, and neighbor-joining methods of phylogenetic reconstructions in obtaining the correct tree
    • Saitou N, Imanishi M. 1989. Relative efficiencies of the Fitch-Margoliash, maximum-parsimony, maximum-likelihood, minimum-evolution, and neighbor-joining methods of phylogenetic reconstructions in obtaining the correct tree. Mol. Biol. Evol. 6:514-25
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 514-525
    • Saitou, N.1    Imanishi, M.2
  • 112
    • 0022833247 scopus 로고
    • The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence
    • Saitou N, Nei M. 1986. The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence. J. Mol. Evol. 24:189-204
    • (1986) J. Mol. Evol. , vol.24 , pp. 189-204
    • Saitou, N.1    Nei, M.2
  • 113
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-25
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 115
    • 0027483609 scopus 로고
    • A simple method to improve the reliability of tree reconstructions
    • Schoniger M, von Haeseler A. 1993. A simple method to improve the reliability of tree reconstructions. Mol. Biol. Evol. 10:471-83
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 471-483
    • Schoniger, M.1    Von Haeseler, A.2
  • 116
    • 0029537529 scopus 로고
    • Performance of the maximum likelihood, neighbor joining, and maximum parsimony methods when sequence sites are not independent
    • Schoniger M, von Haeseler A. 1995. Performance of the maximum likelihood, neighbor joining, and maximum parsimony methods when sequence sites are not independent. Syst. Biol. 44:533-47
    • (1995) Syst. Biol. , vol.44 , pp. 533-547
    • Schoniger, M.1    Von Haeseler, A.2
  • 117
    • 0028465508 scopus 로고
    • A molecular evolutionary framework for eukaryotic model organisms
    • Sidow A, Thomas WK. 1994. A molecular evolutionary framework for eukaryotic model organisms. Curr. Biol. 4:596-603
    • (1994) Curr. Biol. , vol.4 , pp. 596-603
    • Sidow, A.1    Thomas, W.K.2
  • 118
    • 0029965168 scopus 로고    scopus 로고
    • Bootstrap method of interior-branch test for phylogenetic trees
    • Sitnikova T. 1996. Bootstrap method of interior-branch test for phylogenetic trees. Mol. Biol. Evol. 13:605-11
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 605-611
    • Sitnikova, T.1
  • 119
    • 8044234115 scopus 로고    scopus 로고
    • Deleted in proof
    • Deleted in proof
  • 120
    • 0028985519 scopus 로고
    • Interior-branch and the bootstrap tests of phylogenetic trees
    • Sitnikova T, Rzhetsky A, Nei M. 1995. Interior-branch and the bootstrap tests of phylogenetic trees. Mol. Biol. Evol. 12:319-33
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 319-333
    • Sitnikova, T.1    Rzhetsky, A.2    Nei, M.3
  • 122
    • 0023105557 scopus 로고
    • Accuracy of phylogenetic trees estimated from DNA sequence data
    • Sourdis J, Krimbas C. 1987. Accuracy of phylogenetic trees estimated from DNA sequence data. Mol. Biol. Evol. 4:159-66
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 159-166
    • Sourdis, J.1    Krimbas, C.2
  • 123
    • 0024009105 scopus 로고
    • Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree
    • Sourdis J, Nei M. 1988. Relative efficiencies of the maximum parsimony and distance-matrix methods in obtaining the correct phylogenetic tree. Mol. Biol. Evol. 5:298-311
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 298-311
    • Sourdis, J.1    Nei, M.2
  • 125
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • ed. DM Hillis, C Moritz, BK Mable, Sunderland, MA: Sinauer. 2nd ed.
    • Swofford DL, Olsen GJ, Waddell PJ, Hillis DM. 1996. Phylogenetic inference. In Molecular Systematics, ed. DM Hillis, C Moritz, BK Mable, 407-514. Sunderland, MA: Sinauer. 2nd ed.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 126
    • 0027453388 scopus 로고
    • Simple methods for testing molecular clock hypothesis
    • Tajima F. 1993. Simple methods for testing molecular clock hypothesis. Genetics 135:599-607
    • (1993) Genetics , vol.135 , pp. 599-607
    • Tajima, F.1
  • 127
    • 0027215171 scopus 로고
    • Unbiased estimate of evolutionary distance between nucleotide sequences
    • Tajima F. 1993. Unbiased estimate of evolutionary distance between nucleotide sequences. Mol. Biol. Evol. 10:677-88
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 677-688
    • Tajima, F.1
  • 128
    • 0028280349 scopus 로고
    • Estimation of evolutionary distance for reconstructing molecular phylogenetic trees
    • Tajima F, Takezaki N. 1994. Estimation of evolutionary distance for reconstructing molecular phylogenetic trees. Mol. Biol. Evol. 11:278-86
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 278-286
    • Tajima, F.1    Takezaki, N.2
  • 129
    • 0027459098 scopus 로고
    • Allelic genealogy and human evolution
    • Takahata N. 1993. Allelic genealogy and human evolution. Mol. Biol. Evol. 10: 2-22
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 2-22
    • Takahata, N.1
  • 130
    • 0028200719 scopus 로고
    • Inconsistency of the maximum parsimony method when the rate of nucleotide substitution is constant
    • Takezaki N, Nei M. 1994. Inconsistency of the maximum parsimony method when the rate of nucleotide substitution is constant. J. Mol. Evol. 39:210-18
    • (1994) J. Mol. Evol. , vol.39 , pp. 210-218
    • Takezaki, N.1    Nei, M.2
  • 131
    • 0029100727 scopus 로고
    • Phylogenetic test of the molecular clock and linearized tree
    • Takezaki N, Rzhetsky A, Nei M. 1995. Phylogenetic test of the molecular clock and linearized tree. Mol. Biol. Evol. 12:823-33
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 823-833
    • Takezaki, N.1    Rzhetsky, A.2    Nei, M.3
  • 132
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol. Biol. Evol. 10:512-26
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 133
    • 0024392448 scopus 로고
    • Positive Darwinian selection observed at the variable region genes of immunoglobulins
    • Tanaka T, Nei M. 1989. Positive Darwinian selection observed at the variable region genes of immunoglobulins. Mol. Biol. Evol. 6:447-59
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 447-459
    • Tanaka, T.1    Nei, M.2
  • 134
    • 0020363837 scopus 로고
    • Accuracy of estimated phylogenetic trees from molecular data. I. Distantly related species
    • Tateno Y, Nei M, Tajima F. 1982. Accuracy of estimated phylogenetic trees from molecular data. I. Distantly related species. J. Mol. Evol. 18:387-404
    • (1982) J. Mol. Evol. , vol.18 , pp. 387-404
    • Tateno, Y.1    Nei, M.2    Tajima, F.3
  • 135
    • 0028205953 scopus 로고
    • Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site
    • Tateno Y, Takezaki N, Nei M. 1994. Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site. Mol. Biol. Evol. 11:261-77
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 261-277
    • Tateno, Y.1    Takezaki, N.2    Nei, M.3
  • 136
    • 0021084212 scopus 로고
    • Phylogenetic inference from restriction cleavage site maps with particular reference to the evolution of humans and the apes
    • Templeton AR. 1983. Phylogenetic inference from restriction cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37:221-44
    • (1983) Evolution , vol.37 , pp. 221-244
    • Templeton, A.R.1
  • 137
    • 0027521074 scopus 로고
    • Phylogenetic relationships in Drosophila: A conflict between molecular and morphological data
    • Thomas RH, Hunt JA. 1993. Phylogenetic relationships in Drosophila: a conflict between molecular and morphological data. Mol. Biol. Evol. 10:362-74
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 362-374
    • Thomas, R.H.1    Hunt, J.A.2
  • 138
    • 0028874279 scopus 로고
    • A generalized least-squares estimate of the origin of sporophytic self-incompatibility
    • Uyenoyama M. 1995. A generalized least-squares estimate of the origin of sporophytic self-incompatibility. Genetics 139:975-92
    • (1995) Genetics , vol.139 , pp. 975-992
    • Uyenoyama, M.1
  • 140
    • 0027241482 scopus 로고
    • Monophyletic origins of metazoa: An evolutionary link with fungi
    • Wainright PO, Hinkle G, Sogin ML, Stickel SK. 1993. Monophyletic origins of metazoa: an evolutionary link with fungi. Science 260:340-42
    • (1993) Science , vol.260 , pp. 340-342
    • Wainright, P.O.1    Hinkle, G.2    Sogin, M.L.3    Stickel, S.K.4
  • 141
    • 0027496790 scopus 로고
    • Substitution rate variation among sites in hypervariable region I of human mitochondrial DNA
    • Wakeley J. 1993. Substitution rate variation among sites in hypervariable region I of human mitochondrial DNA. J. Mol. Evol. 37:613-23
    • (1993) J. Mol. Evol. , vol.37 , pp. 613-623
    • Wakeley, J.1
  • 142
    • 0025274493 scopus 로고
    • Phylogeny determination using dynamically weighted parsimony method
    • ed. RF Doolittle, San Diego, CA: Academic
    • Williams PL, Fitch WM. 1990. Phylogeny determination using dynamically weighted parsimony method. In Methods in Enzymology, ed. RF Doolittle, pp. 615-26. San Diego, CA: Academic
    • (1990) Methods in Enzymology , pp. 615-626
    • Williams, P.L.1    Fitch, W.M.2
  • 144
    • 0027225772 scopus 로고
    • Lens crystallins: Gene recruitment and evolutionary dynamism
    • Wistow G. 1993. Lens crystallins: gene recruitment and evolutionary dynamism. Trends Biochem. Sci. 18:301-6
    • (1993) Trends Biochem. Sci. , vol.18 , pp. 301-306
    • Wistow, G.1
  • 145
    • 0025300402 scopus 로고
    • Towards a natural system of organisms: Proposal for the domains archaea, bacteria, and eucarya
    • Woese CR, Kandler O, Wheelis ML. 1990. Towards a natural system of organisms: proposal for the domains archaea, bacteria, and eucarya. Proc. Natl. Acad. Sci. USA 87:4576-79
    • (1990) Proc. Natl. Acad. Sci. USA , vol.87 , pp. 4576-4579
    • Woese, C.R.1    Kandler, O.2    Wheelis, M.L.3
  • 146
    • 0000378875 scopus 로고
    • Evidence for higher rates of nucleotide substitution in rodents than in man
    • Wu C-I, Li W-H. 1985. Evidence for higher rates of nucleotide substitution in rodents than in man. Proc. Natl. Acad. Sci. USA 82:1741-45
    • (1985) Proc. Natl. Acad. Sci. USA , vol.82 , pp. 1741-1745
    • Wu, C.-I.1    Li, W.-H.2
  • 147
    • 0028214103 scopus 로고
    • Estimating the pattern of nucleotide substitution
    • Yang Z. 1994. Estimating the pattern of nucleotide substitution. J. Mol. Evol. 39:105-11
    • (1994) J. Mol. Evol. , vol.39 , pp. 105-111
    • Yang, Z.1
  • 148
    • 0028064845 scopus 로고
    • Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
    • Yang Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-14
    • (1994) J. Mol. Evol. , vol.39 , pp. 306-314
    • Yang, Z.1
  • 149
    • 12044257838 scopus 로고
    • Statistical properties of the maximum likelihood method of phylogenetic estimation and comparison with distance matrix methods
    • Yang Z. 1994. Statistical properties of the maximum likelihood method of phylogenetic estimation and comparison with distance matrix methods. Syst. Biol. 43:329-42
    • (1994) Syst. Biol. , vol.43 , pp. 329-342
    • Yang, Z.1
  • 151
    • 0029878719 scopus 로고    scopus 로고
    • Phylogenetic analysis using parsimony and likelihood methods
    • Yang Z. 1996. Phylogenetic analysis using parsimony and likelihood methods. J. Mol. Evol. 42:294-307
    • (1996) J. Mol. Evol. , vol.42 , pp. 294-307
    • Yang, Z.1
  • 152
    • 0029469716 scopus 로고
    • Maximum likelihood trees from DNA sequences: A peculiar statistical estimation problem
    • Yang Z, Goldman N, Friday AE. 1995. Maximum likelihood trees from DNA sequences: a peculiar statistical estimation problem. Syst. Biol. 44:384-99
    • (1995) Syst. Biol. , vol.44 , pp. 384-399
    • Yang, Z.1    Goldman, N.2    Friday, A.E.3
  • 153
    • 0028820333 scopus 로고
    • A new method of inference of ancestral nucleotide and amino acid sequences
    • Yang Z, Kumar S, Nei M. 1995. A new method of inference of ancestral nucleotide and amino acid sequences. Genetics 141:1641-50
    • (1995) Genetics , vol.141 , pp. 1641-1650
    • Yang, Z.1    Kumar, S.2    Nei, M.3
  • 154
    • 8044235385 scopus 로고    scopus 로고
    • Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods
    • In press
    • Zhang J, Nei M. 1996. Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods. J. Mol. Evol. In press
    • (1996) J. Mol. Evol.
    • Zhang, J.1    Nei, M.2
  • 155
    • 0028108336 scopus 로고
    • Estimation of evolutionary distances between nucleotide sequences
    • Zharkikh A. 1994. Estimation of evolutionary distances between nucleotide sequences. J. Mol. Evol. 39:315-29
    • (1994) J. Mol. Evol. , vol.39 , pp. 315-329
    • Zharkikh, A.1
  • 156
    • 0026443498 scopus 로고
    • Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock
    • Zharkikh A, Li W-H. 1992. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. I. Four taxa with a molecular clock. Mol. Biol. Evol. 9:1119-47
    • (1992) Mol. Biol. Evol. , vol.9 , pp. 1119-1147
    • Zharkikh, A.1    Li, W.-H.2
  • 157
    • 0026484750 scopus 로고
    • Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. II. Four taxa without a molecular clock
    • Zharkikh A, Li W-H. 1992. Statistical properties of bootstrap estimation of phylogenetic variability from nucleotide sequences. II. Four taxa without a molecular clock. J. Mol. Evol. 35:356-66
    • (1992) J. Mol. Evol. , vol.35 , pp. 356-366
    • Zharkikh, A.1    Li, W.-H.2
  • 158
    • 12044256327 scopus 로고
    • Inconsistency of the maximum-parsimony method: The case of five taxa with a molecular clock
    • Zharkikh A, Li W-H. 1993. Inconsistency of the maximum-parsimony method: the case of five taxa with a molecular clock. Syst. Biol. 42:113-25
    • (1993) Syst. Biol. , vol.42 , pp. 113-125
    • Zharkikh, A.1    Li, W.-H.2
  • 159
    • 0029261787 scopus 로고
    • Estimation of confidence in phylogeny: Complete-and-partial bootstrap technique
    • Zharkikh A, Li W-H. 1995. Estimation of confidence in phylogeny: complete-and-partial bootstrap technique. Mol. Phyl. Evol. 4:44-63
    • (1995) Mol. Phyl. Evol. , vol.4 , pp. 44-63
    • Zharkikh, A.1    Li, W.-H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.