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Volumn 18, Issue 13, 2008, Pages 956-962

Multiple Genes of Apparent Algal Origin Suggest Ciliates May Once Have Been Photosynthetic

Author keywords

EVO_ECOL

Indexed keywords

ALGAL PROTEIN; PROTOZOAL PROTEIN;

EID: 45849124190     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2008.05.042     Document Type: Article
Times cited : (80)

References (43)
  • 1
    • 0019764215 scopus 로고
    • Eukaryote kingdoms: seven or nine?
    • Cavalier-Smith T. Eukaryote kingdoms: seven or nine?. Biosystems 14 (1981) 461-481
    • (1981) Biosystems , vol.14 , pp. 461-481
    • Cavalier-Smith, T.1
  • 2
    • 0032838597 scopus 로고    scopus 로고
    • Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree
    • Cavalier-Smith T. Principles of protein and lipid targeting in secondary symbiogenesis: euglenoid, dinoflagellate, and sporozoan plastid origins and the eukaryote family tree. J. Eukaryot. Microbiol. 46 (1999) 347-366
    • (1999) J. Eukaryot. Microbiol. , vol.46 , pp. 347-366
    • Cavalier-Smith, T.1
  • 3
    • 0347635417 scopus 로고    scopus 로고
    • Photosynthetic eukaryotes unite: endosymbiosis connects the dots
    • Bhattacharya D., Yoon H.S., and Hackett J.D. Photosynthetic eukaryotes unite: endosymbiosis connects the dots. Bioessays 26 (2004) 50-60
    • (2004) Bioessays , vol.26 , pp. 50-60
    • Bhattacharya, D.1    Yoon, H.S.2    Hackett, J.D.3
  • 4
    • 0032727696 scopus 로고    scopus 로고
    • Tracing the thread of plastid diversity through the tapestry of life
    • Delwiche C.F. Tracing the thread of plastid diversity through the tapestry of life. Am. Nat. 154 (1999) S164-S177
    • (1999) Am. Nat. , vol.154
    • Delwiche, C.F.1
  • 5
    • 0035689472 scopus 로고    scopus 로고
    • Primary and secondary endosymbiosis and the origin of plastids
    • McFadden G.I. Primary and secondary endosymbiosis and the origin of plastids. J. Phycol. 37 (2001) 951-959
    • (2001) J. Phycol. , vol.37 , pp. 951-959
    • McFadden, G.I.1
  • 6
    • 0037327022 scopus 로고    scopus 로고
    • The symbiotic birth and spread of plastids: how many times and whodunit?
    • Palmer J.D. The symbiotic birth and spread of plastids: how many times and whodunit?. J. Phycol. 39 (2003) 4-12
    • (2003) J. Phycol. , vol.39 , pp. 4-12
    • Palmer, J.D.1
  • 7
    • 0036124759 scopus 로고    scopus 로고
    • Re-examining alveolate evolution using multiple protein molecular phylogenies
    • Fast N.M., Xue L., Bingham S., and Keeling P.J. Re-examining alveolate evolution using multiple protein molecular phylogenies. J. Eukaryot. Microbiol. 49 (2002) 30-37
    • (2002) J. Eukaryot. Microbiol. , vol.49 , pp. 30-37
    • Fast, N.M.1    Xue, L.2    Bingham, S.3    Keeling, P.J.4
  • 8
    • 13244270095 scopus 로고    scopus 로고
    • On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes
    • Harper J.T., Waanders E., and Keeling P.J. On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes. Int. J. Syst. Evol. Microbiol. 55 (2005) 487-496
    • (2005) Int. J. Syst. Evol. Microbiol. , vol.55 , pp. 487-496
    • Harper, J.T.1    Waanders, E.2    Keeling, P.J.3
  • 11
    • 0344440735 scopus 로고    scopus 로고
    • Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids
    • Harper J.T., and Keeling P.J. Nucleus-encoded, plastid-targeted glyceraldehyde-3-phosphate dehydrogenase (GAPDH) indicates a single origin for chromalveolate plastids. Mol. Biol. Evol. 20 (2003) 1730-1735
    • (2003) Mol. Biol. Evol. , vol.20 , pp. 1730-1735
    • Harper, J.T.1    Keeling, P.J.2
  • 12
    • 33244468402 scopus 로고    scopus 로고
    • Phylogenomic analysis identifies red algal genes of endosymbiotic origin in the chromalveolates
    • Li S., Nosenko T., Hackett J.D., and Bhattacharya D. Phylogenomic analysis identifies red algal genes of endosymbiotic origin in the chromalveolates. Mol. Biol. Evol. 23 (2006) 663-674
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 663-674
    • Li, S.1    Nosenko, T.2    Hackett, J.D.3    Bhattacharya, D.4
  • 13
    • 33646881141 scopus 로고    scopus 로고
    • A "green" phosphoribulokinase in complex algae with red plastids: evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates
    • Petersen J., Teich R., Brinkmann H., and Cerff R. A "green" phosphoribulokinase in complex algae with red plastids: evidence for a single secondary endosymbiosis leading to haptophytes, cryptophytes, heterokonts, and dinoflagellates. J. Mol. Evol. 62 (2006) 143-157
    • (2006) J. Mol. Evol. , vol.62 , pp. 143-157
    • Petersen, J.1    Teich, R.2    Brinkmann, H.3    Cerff, R.4
  • 14
    • 34547754024 scopus 로고    scopus 로고
    • Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of Rhizaria with chromalveolates
    • Hackett J.D., Yoon H.S., Li S., Reyes-Prieto A., Rummele S.E., and Bhattacharya D. Phylogenomic analysis supports the monophyly of cryptophytes and haptophytes and the association of Rhizaria with chromalveolates. Mol. Biol. Evol. 24 (2007) 1702-1713
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1702-1713
    • Hackett, J.D.1    Yoon, H.S.2    Li, S.3    Reyes-Prieto, A.4    Rummele, S.E.5    Bhattacharya, D.6
  • 15
    • 34247899047 scopus 로고    scopus 로고
    • Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages
    • Patron N.J., Inagaki Y., and Keeling P.J. Multiple gene phylogenies support the monophyly of cryptomonad and haptophyte host lineages. Curr. Biol. 17 (2007) 887-891
    • (2007) Curr. Biol. , vol.17 , pp. 887-891
    • Patron, N.J.1    Inagaki, Y.2    Keeling, P.J.3
  • 17
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf S.L., Roger A.J., Wenk-Siefert I., and Doolittle W.F. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290 (2000) 972-977
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 18
    • 0026017244 scopus 로고
    • Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates
    • Gajadhar A.A., Marquardt W.C., Hall R., Gunderson J., Ariztia-Carmona E.V., and Sogin M.L. Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthecodinium cohnii reveal evolutionary relationships among apicomplexans, dinoflagellates, and ciliates. Mol. Biochem. Parasitol. 45 (1991) 147-154
    • (1991) Mol. Biochem. Parasitol. , vol.45 , pp. 147-154
    • Gajadhar, A.A.1    Marquardt, W.C.2    Hall, R.3    Gunderson, J.4    Ariztia-Carmona, E.V.5    Sogin, M.L.6
  • 21
    • 1542345724 scopus 로고    scopus 로고
    • A first glimpse into the pattern and scale of gene transfer in the Apicomplexa
    • Huang J., Mullapudi N., Sicheritz-Ponten T., and Kissinger J.C. A first glimpse into the pattern and scale of gene transfer in the Apicomplexa. Int. J. Parasitol. 34 (2004) 265-274
    • (2004) Int. J. Parasitol. , vol.34 , pp. 265-274
    • Huang, J.1    Mullapudi, N.2    Sicheritz-Ponten, T.3    Kissinger, J.C.4
  • 22
    • 44649178727 scopus 로고    scopus 로고
    • A cryptic algal group unveiled: a plastid biosynthesis pathway in the oyster parasite Perkinsus marinus
    • Matsuzaki M., Kuroiwa H., Kuroiwa T., Kita K., and Nozaki H. A cryptic algal group unveiled: a plastid biosynthesis pathway in the oyster parasite Perkinsus marinus. Mol. Biol. Evol. 25 (2008) 1167-1179
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1167-1179
    • Matsuzaki, M.1    Kuroiwa, H.2    Kuroiwa, T.3    Kita, K.4    Nozaki, H.5
  • 23
    • 45849090251 scopus 로고    scopus 로고
    • Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina
    • Slamovits C.H., and Keeling P.J. Plastid-derived genes in the nonphotosynthetic alveolate Oxyrrhis marina. Mol. Biol. Evol. 25 (2008) 1297-1306
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 1297-1306
    • Slamovits, C.H.1    Keeling, P.J.2
  • 26
    • 34547793619 scopus 로고    scopus 로고
    • Evolution of the glucose-6-phosphate isomerase: the plasticity of primary metabolism in photosynthetic eukaryotes
    • Grauvogel C., Brinkmann H., and Petersen J. Evolution of the glucose-6-phosphate isomerase: the plasticity of primary metabolism in photosynthetic eukaryotes. Mol. Biol. Evol. 24 (2007) 1611-1621
    • (2007) Mol. Biol. Evol. , vol.24 , pp. 1611-1621
    • Grauvogel, C.1    Brinkmann, H.2    Petersen, J.3
  • 27
    • 0037126071 scopus 로고    scopus 로고
    • Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus
    • Martin W., Rujan T., Richly E., Hansen A., Cornelsen S., Lins T., Leister D., Stoebe B., Hasegawa M., and Penny D. Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc. Natl. Acad. Sci. USA 99 (2002) 12246-12251
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 12246-12251
    • Martin, W.1    Rujan, T.2    Richly, E.3    Hansen, A.4    Cornelsen, S.5    Lins, T.6    Leister, D.7    Stoebe, B.8    Hasegawa, M.9    Penny, D.10
  • 29
    • 33748136805 scopus 로고    scopus 로고
    • Genome architecture drives protein evolution in ciliates
    • Zufall R.A., McGrath C.L., Muse S.V., and Katz L.A. Genome architecture drives protein evolution in ciliates. Mol. Biol. Evol. 23 (2006) 1681-1687
    • (2006) Mol. Biol. Evol. , vol.23 , pp. 1681-1687
    • Zufall, R.A.1    McGrath, C.L.2    Muse, S.V.3    Katz, L.A.4
  • 31
    • 0002160837 scopus 로고    scopus 로고
    • Gene transfer from organelles to the nucleus: how much, what happens, and why?
    • Martin W., and Herrmann R.G. Gene transfer from organelles to the nucleus: how much, what happens, and why?. Plant Physiol. 118 (1998) 9-17
    • (1998) Plant Physiol. , vol.118 , pp. 9-17
    • Martin, W.1    Herrmann, R.G.2
  • 32
    • 33751422757 scopus 로고    scopus 로고
    • Cyanobacterial contribution to algal nuclear genomes is primarily limited to plastid functions
    • Reyes-Prieto A., Hackett J.D., Soares M.B., Bonaldo M.F., and Bhattacharya D. Cyanobacterial contribution to algal nuclear genomes is primarily limited to plastid functions. Curr. Biol. 16 (2006) 2320-2325
    • (2006) Curr. Biol. , vol.16 , pp. 2320-2325
    • Reyes-Prieto, A.1    Hackett, J.D.2    Soares, M.B.3    Bonaldo, M.F.4    Bhattacharya, D.5
  • 36
    • 21144435581 scopus 로고    scopus 로고
    • Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum
    • Huang J., Mullapudi N., Lancto C.A., Scott M., Abrahamsen M.S., and Kissinger J.C. Phylogenomic evidence supports past endosymbiosis, intracellular and horizontal gene transfer in Cryptosporidium parvum. Genome Biol. 5 (2004) R88
    • (2004) Genome Biol. , vol.5
    • Huang, J.1    Mullapudi, N.2    Lancto, C.A.3    Scott, M.4    Abrahamsen, M.S.5    Kissinger, J.C.6
  • 37
    • 4944233611 scopus 로고    scopus 로고
    • PhyloGenie: automated phylome generation and analysis
    • Frickey T., and Lupas A.N. PhyloGenie: automated phylome generation and analysis. Nucleic Acids Res. 32 (2004) 5231-5238
    • (2004) Nucleic Acids Res. , vol.32 , pp. 5231-5238
    • Frickey, T.1    Lupas, A.N.2
  • 38
    • 40049106345 scopus 로고    scopus 로고
    • PhyloSort: a user-friendly phylogenetic sorting tool and its application to estimating the cyanobacterial contribution to the nuclear genome of Chlamydomonas
    • Moustafa A., and Bhattacharya D. PhyloSort: a user-friendly phylogenetic sorting tool and its application to estimating the cyanobacterial contribution to the nuclear genome of Chlamydomonas. BMC Evol. Biol. 8 (2008) 6
    • (2008) BMC Evol. Biol. , vol.8 , pp. 6
    • Moustafa, A.1    Bhattacharya, D.2
  • 39
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 40
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22 (2006) 2688-2690
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 41
    • 0034849408 scopus 로고    scopus 로고
    • MRBAYES: Bayesian inference of phylogenetic trees
    • Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
    • (2001) Bioinformatics , vol.17 , pp. 754-755
    • Huelsenbeck, J.P.1    Ronquist, F.2
  • 42
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt H.A., Strimmer K., Vingron M., and von Haeseler A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18 (2002) 502-504
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    von Haeseler, A.4
  • 43
    • 0036139287 scopus 로고    scopus 로고
    • CONSEL: for assessing the confidence of phylogenetic tree selection
    • Shimodaira H., and Hasegawa M. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17 (2001) 1246-1247
    • (2001) Bioinformatics , vol.17 , pp. 1246-1247
    • Shimodaira, H.1    Hasegawa, M.2


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