메뉴 건너뛰기




Volumn 23, Issue 11, 2009, Pages 755-763

Conserved network properties of helical membrane protein structures and its implication for improving membrane protein homology modeling at the twilight zone

Author keywords

Average degree; Homologous modeling; Network; Sequence separation; Twilight zone

Indexed keywords

BIOLOGICAL MEMBRANES; POTENTIAL ENERGY;

EID: 72849124575     PISSN: 0920654X     EISSN: 15734951     Source Type: Journal    
DOI: 10.1007/s10822-008-9220-9     Document Type: Article
Times cited : (5)

References (32)
  • 1
    • 0033956331 scopus 로고    scopus 로고
    • Riding the wave: Structural and energetic principles of helical membrane proteins
    • DOI 10.1016/S0958-1669(99)00056-7
    • KG Fleming 2000 Curr Opin Biotechnol 11 67 71 10.1016/S0958-1669(99) 00056-7 1:CAS:528:DC%2BD3cXhtlymsLw%3D (Pubitemid 30099041)
    • (2000) Current Opinion in Biotechnology , vol.11 , Issue.1 , pp. 67-71
    • Fleming, K.G.1
  • 2
    • 0037020329 scopus 로고    scopus 로고
    • Drug design strategies for targeting G-protein-coupled receptors
    • DOI 10.1002/1439-7633(20021004)3:10<928::AID-CBIC928>3.0.CO;2-5
    • T Klabunde G Hessler 2002 Chembiochem 3 928 944 10.1002/1439- 7633(20021004)3:10<928::AID-CBIC928>3.0.CO;2-5 1:CAS:528: DC%2BD38XnvFGgu7Y%3D (Pubitemid 35189597)
    • (2002) ChemBioChem , vol.3 , Issue.10 , pp. 928-944
    • Klabunde, T.1    Hessler, G.2
  • 3
    • 0030274647 scopus 로고    scopus 로고
    • 10.1038/nbt1196-1516 1:CAS:528:DyaK28XmsFynsL8%3D
    • J Drews 1996 Nat Biotechnol 14 1516 1518 10.1038/nbt1196-1516 1:CAS:528:DyaK28XmsFynsL8%3D
    • (1996) Nat Biotechnol , vol.14 , pp. 1516-1518
    • Drews, J.1
  • 4
    • 3042621274 scopus 로고    scopus 로고
    • The progress of membrane protein structure determination
    • DOI 10.1110/ps.04712004
    • SH White 2004 Protein Sci 13 1948 1949 10.1110/ps.04712004 1:CAS:528:DC%2BD2cXlsFWkur0%3D (Pubitemid 38822136)
    • (2004) Protein Science , vol.13 , Issue.7 , pp. 1948-1949
    • White, S.H.1
  • 5
    • 0030908273 scopus 로고    scopus 로고
    • Advances in comparative protein-structure modelling
    • DOI 10.1016/S0959-440X(97)80027-9
    • R Sanchez A Sali 1997 Curr Opin Struct Biol 7 206 214 10.1016/S0959-440X(97)80027-9 1:CAS:528:DyaK2sXisFyhurk%3D (Pubitemid 27156719)
    • (1997) Current Opinion in Structural Biology , vol.7 , Issue.2 , pp. 206-214
    • Sanchez, R.1    Sali, A.2
  • 6
    • 25444444202 scopus 로고    scopus 로고
    • Computational modeling approaches to structure-function analysis of G protein-coupled receptors
    • DOI 10.1021/cr000095n
    • F Fanelli PG De Benedetti 2005 Chem Rev 105 3297 3351 10.1021/cr000095n 1:CAS:528:DC%2BD2MXpt1Whsrs%3D (Pubitemid 41430812)
    • (2005) Chemical Reviews , vol.105 , Issue.9 , pp. 3297-3351
    • Fanelli, F.1    De Benedetti, P.G.2
  • 8
    • 0035117505 scopus 로고    scopus 로고
    • Minireview: Insights into G protein-coupled receptor function using molecular models
    • DOI 10.1210/en.142.1.2
    • MC Gershengorn R Osman 2001 Endocrinology 142 2 10 10.1210/en.142.1.2 1:CAS:528:DC%2BD3MXltFSrtQ%3D%3D (Pubitemid 32183658)
    • (2001) Endocrinology , vol.142 , Issue.1 , pp. 2-10
    • Gershengorn, M.C.1    Osman, R.2
  • 10
    • 0031576355 scopus 로고    scopus 로고
    • Do aligned sequences share the same fold?
    • DOI 10.1006/jmbi.1997.1287
    • RA Abagyan S Batalov 1997 J Mol Biol 273 355 368 10.1006/jmbi.1997.1287 1:CAS:528:DyaK2sXmvFymtbY%3D (Pubitemid 27460236)
    • (1997) Journal of Molecular Biology , vol.273 , Issue.1 , pp. 355-368
    • Abagyan, R.A.1    Batalov, S.2
  • 11
    • 0035812694 scopus 로고    scopus 로고
    • Protein structure prediction and structural genomics
    • DOI 10.1126/science.1065659
    • D Baker A Sali 2001 Science 294 93 96 10.1126/science.1065659 1:CAS:528:DC%2BD3MXnsFyisbY%3D (Pubitemid 32952955)
    • (2001) Science , vol.294 , Issue.5540 , pp. 93-96
    • Baker, D.1    Sali, A.2
  • 13
    • 37849188778 scopus 로고    scopus 로고
    • Modeling and active site refinement for G protein-coupled receptors: Application to the β-2 adrenergic receptor
    • DOI 10.1007/s10822-006-9065-z
    • SR Krystek Jr SR Kimura AJ Tebben 2006 J Comput Aided Mol Des 20 463 470 10.1007/s10822-006-9065-z 1:CAS:528:DC%2BD28Xht1erurbL (Pubitemid 44823884)
    • (2006) Journal of Computer-Aided Molecular Design , vol.20 , Issue.7-8 , pp. 463-470
    • Krystek, S.R.1    Kimura, S.R.2    Tebben, A.J.3
  • 15
    • 33745714411 scopus 로고    scopus 로고
    • 10.1529/biophysj.106.082313 1:CAS:528:DC%2BD28XmvVags7w%3D
    • LR Forrest CL Tang B Honig 2006 Biophys J 91 508 517 10.1529/biophysj. 106.082313 1:CAS:528:DC%2BD28XmvVags7w%3D
    • (2006) Biophys J , vol.91 , pp. 508-517
    • Forrest, L.R.1    Tang, C.L.2    Honig, B.3
  • 16
    • 0036382758 scopus 로고    scopus 로고
    • 10.1016/S0022-2836(02)00590-9 1:CAS:528:DC%2BD38Xmt1Gnur0%3D
    • SJ Fleishman N Ben-Tal 2002 J Mol Biol 321 363 378 10.1016/S0022-2836(02) 00590-9 1:CAS:528:DC%2BD38Xmt1Gnur0%3D
    • (2002) J Mol Biol , vol.321 , pp. 363-378
    • Fleishman, S.J.1    Ben-Tal, N.2
  • 17
    • 33748451884 scopus 로고    scopus 로고
    • Assembly of transmembrane helices of simple polytopic membrane proteins from sequence conservation patterns
    • DOI 10.1002/prot.21025
    • Y Park V Helms 2006 Proteins 64 895 905 10.1002/prot.21025 1:CAS:528:DC%2BD28XovVOjs74%3D (Pubitemid 44420931)
    • (2006) Proteins: Structure, Function and Genetics , vol.64 , Issue.4 , pp. 895-905
    • Park, Y.1    Helms, V.2
  • 18
    • 38349175417 scopus 로고    scopus 로고
    • 10.1093/protein/gzm059 1:CAS:528:DC%2BD1cXis12ktbc%3D
    • V Pabuwal Z Li 2008 Protein Eng Des Sel 21 55 64 10.1093/protein/gzm059 1:CAS:528:DC%2BD1cXis12ktbc%3D
    • (2008) Protein Eng des Sel , vol.21 , pp. 55-64
    • Pabuwal, V.1    Li, Z.2
  • 19
    • 33745698176 scopus 로고    scopus 로고
    • 10.1093/protein/gzl009 1:CAS:528:DC%2BD28XmsVehsLc%3D
    • UK Muppirala Z Li 2006 Protein Eng Des Sel 19 265 275 10.1093/protein/gzl009 1:CAS:528:DC%2BD28XmsVehsLc%3D
    • (2006) Protein Eng des Sel , vol.19 , pp. 265-275
    • Muppirala, U.K.1    Li, Z.2
  • 21
    • 0242720597 scopus 로고    scopus 로고
    • Uncovering network systems within protein structures
    • DOI 10.1016/j.jmb.2003.08.061
    • LH Greene VA Higman 2003 J Mol Biol 334 781 791 10.1016/j.jmb.2003.08.061 1:CAS:528:DC%2BD3sXovF2kuro%3D (Pubitemid 37433891)
    • (2003) Journal of Molecular Biology , vol.334 , Issue.4 , pp. 781-791
    • Greene, L.H.1    Higman, V.A.2
  • 25
    • 13444280419 scopus 로고    scopus 로고
    • PDB-TM: Selection and membrane localization of transmembrane proteins in the protein data bank
    • DOI 10.1093/nar/gki002
    • GE Tusnady Z Dosztanyi I Simon 2005 Nucleic Acids Res 33 D275 D278 10.1093/nar/gki002 1:CAS:528:DC%2BD2MXisVejsA%3D%3D (Pubitemid 40207877)
    • (2005) Nucleic Acids Research , vol.33 , Issue.DATABASE ISS.
    • Tusnady, G.E.1    Dosztanyi, Z.2    Simon, I.3
  • 32
    • 0027191901 scopus 로고
    • 10.1093/protein/6.3.267 1:CAS:528:DyaK3sXktVCnsr0%3D
    • S Miyazawa RL Jernigan 1993 Protein Eng 6 267 278 10.1093/protein/6.3.267 1:CAS:528:DyaK3sXktVCnsr0%3D
    • (1993) Protein Eng , vol.6 , pp. 267-278
    • Miyazawa, S.1    Jernigan, R.L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.