-
1
-
-
0033950315
-
Understanding membrane protein structure by design
-
Bowie, J. U. (2000). Understanding membrane protein structure by design. Nature Struct. Biol. 7, 91-94.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 91-94
-
-
Bowie, J.U.1
-
2
-
-
0025249842
-
Membrane protein folding and oligomerization: The two-stage model
-
Popot, J. L. & Engelman, D. M. (1990). Membrane protein folding and oligomerization: the two-stage model. Biochemistry, 29, 4031-4037.
-
(1990)
Biochemistry
, vol.29
, pp. 4031-4037
-
-
Popot, J.L.1
Engelman, D.M.2
-
3
-
-
0033790343
-
Helical membrane protein folding, stability, and evolution
-
Popot, J. L. & Engelman, D. M. (2000). Helical membrane protein folding, stability, and evolution. Annu. Rev. Biochem. 69, 881-922.
-
(2000)
Annu. Rev. Biochem.
, vol.69
, pp. 881-922
-
-
Popot, J.L.1
Engelman, D.M.2
-
4
-
-
0032987478
-
Membrane protein folding and stability: Physical principles
-
White, S. H. & Wimley, W. C. (1999). Membrane protein folding and stability: physical principles. Annu. Rev. Biophys. Biomol. Struct. 28, 319-365.
-
(1999)
Annu. Rev. Biophys. Biomol. Struct.
, vol.28
, pp. 319-365
-
-
White, S.H.1
Wimley, W.C.2
-
5
-
-
0030431744
-
Principles of membrane protein assembly and structure
-
von Heijne, G. (1996). Principles of membrane protein assembly and structure. Prog. Biophys. Mol. Biol. 66, 113-139.
-
(1996)
Prog. Biophys. Mol. Biol.
, vol.66
, pp. 113-139
-
-
Von Heijne, G.1
-
6
-
-
0032561132
-
Principles governing amino acid composition of integral membrane proteins: Application to topology prediction
-
Tusnady, G. E. & Simon, I. (1998). Principles governing amino acid composition of integral membrane proteins: application to topology prediction. J. Mol. Biol. 283, 489-506.
-
(1998)
J. Mol. Biol.
, vol.283
, pp. 489-506
-
-
Tusnady, G.E.1
Simon, I.2
-
7
-
-
0035367173
-
Helical membrane proteins: Diversity of functions in the context of simple architecture
-
Ubarretxena-Belandia, I. & Engelman, D. M. (2001). Helical membrane proteins: diversity of functions in the context of simple architecture. Curr. Opin. Struct. Biol. 11, 370-376.
-
(2001)
Curr. Opin. Struct. Biol.
, vol.11
, pp. 370-376
-
-
Ubarretxena-Belandia, I.1
Engelman, D.M.2
-
8
-
-
0024346677
-
Hydrophobic organization of membrane proteins
-
Rees, D. C., DeAntonio, L. & Eisenberg, D. (1989). Hydrophobic organization of membrane proteins. Science, 245, 510-513.
-
(1989)
Science
, vol.245
, pp. 510-513
-
-
Rees, D.C.1
DeAntonio, L.2
Eisenberg, D.3
-
9
-
-
0021691817
-
Analysis of membrane and surface protein sequences with the hydrophobic moment plot
-
Eisenberg, D., Schwarz, E., Komaromy, M. & Wall, R. (1984). Analysis of membrane and surface protein sequences with the hydrophobic moment plot. J. Mol. Biol. 179, 125-142.
-
(1984)
J. Mol. Biol.
, vol.179
, pp. 125-142
-
-
Eisenberg, D.1
Schwarz, E.2
Komaromy, M.3
Wall, R.4
-
10
-
-
0033544689
-
kPROT: A knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction
-
Pilpel, Y., Ben-Tal, N. & Lancet, D. (1999). kPROT: a knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction. J. Mol. Biol. 294, 921-935.
-
(1999)
J. Mol. Biol.
, vol.294
, pp. 921-935
-
-
Pilpel, Y.1
Ben-Tal, N.2
Lancet, D.3
-
12
-
-
0034705142
-
Internal packing of helical membrane proteins
-
Eilers, M., Shekar, S. C., Shieh, T., Smith, S. O. & Fleming, P. J. (2000). Internal packing of helical membrane proteins. Proc. Natl Acad. Sci. USA, 97, 5796-5801.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 5796-5801
-
-
Eilers, M.1
Shekar, S.C.2
Shieh, T.3
Smith, S.O.4
Fleming, P.J.5
-
13
-
-
0034493669
-
A triangle lattice model that predicts transmembrane helix configuration using a polar jigsaw puzzle
-
Hirokawa, T., Uechi, J., Sasamoto, H., Suwa, M. & Mitaku, S. (2000). A triangle lattice model that predicts transmembrane helix configuration using a polar jigsaw puzzle. Protein Eng. 13, 771-778.
-
(2000)
Protein Eng.
, vol.13
, pp. 771-778
-
-
Hirokawa, T.1
Uechi, J.2
Sasamoto, H.3
Suwa, M.4
Mitaku, S.5
-
14
-
-
0035283158
-
Folding of bundles of alpha-helices in solution, membranes, and adsorbed overlayers
-
Zhdanov, V. P. & Kasemo, B. (2001). Folding of bundles of alpha-helices in solution, membranes, and adsorbed overlayers. Proteins: Struct. Funct. Genet. 42, 481-494.
-
(2001)
Proteins: Struct. Funct. Genet.
, vol.42
, pp. 481-494
-
-
Zhdanov, V.P.1
Kasemo, B.2
-
15
-
-
0028175436
-
A method for alpha-helical integral membrane protein fold prediction
-
Taylor, W. R., Jones, D. T. & Green, N. M. (1994). A method for alpha-helical integral membrane protein fold prediction. Proteins: Struct. Funct. Genet. 18, 281-294.
-
(1994)
Proteins: Struct. Funct. Genet.
, vol.18
, pp. 281-294
-
-
Taylor, W.R.1
Jones, D.T.2
Green, N.M.3
-
16
-
-
0027465452
-
Packing and recognition of protein structural elements: A new approach applied to the 4-helix bundle of myohemerythrin
-
Tuffery, P. & Lavery, R. (1993). Packing and recognition of protein structural elements: a new approach applied to the 4-helix bundle of myohemerythrin. Proteins: Struct. Funct. Genet. 15, 413-425.
-
(1993)
Proteins: Struct. Funct. Genet.
, vol.15
, pp. 413-425
-
-
Tuffery, P.1
Lavery, R.2
-
17
-
-
0031565726
-
An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors
-
Baldwin, J. M., Schertler, G. F. & Unger, V. M. (1997). An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors. J. Mol. Biol. 272, 144-164.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 144-164
-
-
Baldwin, J.M.1
Schertler, G.F.2
Unger, V.M.3
-
18
-
-
0029557910
-
Computational searching and mutagenesis suggest a structure for the pentameric transmembrane domain of phospholamban
-
Adams, P. D., Arkin, I. T., Engelman, D. M. & Brunger, A. T. (1995). Computational searching and mutagenesis suggest a structure for the pentameric transmembrane domain of phospholamban. Nature Struct. Biol. 2, 154-162.
-
(1995)
Nature Struct. Biol.
, vol.2
, pp. 154-162
-
-
Adams, P.D.1
Arkin, I.T.2
Engelman, D.M.3
Brunger, A.T.4
-
19
-
-
0035882546
-
A new method to model membrane protein structure based on silent amino acid substitutions
-
Briggs, J. A., Torres, J. & Arkin, I. T. (2001). A new method to model membrane protein structure based on silent amino acid substitutions. Proteins: Struct. Funct. Genet. 44, 370-375.
-
(2001)
Proteins: Struct. Funct. Genet.
, vol.44
, pp. 370-375
-
-
Briggs, J.A.1
Torres, J.2
Arkin, I.T.3
-
20
-
-
0032932375
-
A potential smoothing algorithm accurately predicts transmembrane helix packing
-
Pappu, R. V., Marshall, G. R. & Ponder, J. W. (1999). A potential smoothing algorithm accurately predicts transmembrane helix packing. Nature Struct. Biol. 6, 50-55.
-
(1999)
Nature Struct. Biol.
, vol.6
, pp. 50-55
-
-
Pappu, R.V.1
Marshall, G.R.2
Ponder, J.W.3
-
21
-
-
0035943429
-
Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins
-
Adamian, L. & Liang, J. (2001). Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins. J. Mol. Biol. 311, 891-907.
-
(2001)
J. Mol. Biol.
, vol.311
, pp. 891-907
-
-
Adamian, L.1
Liang, J.2
-
22
-
-
0032406838
-
Statistical analysis of predicted transmembrane alpha-helices
-
Arkin, I. T. & Brunger, A. T. (1998). Statistical analysis of predicted transmembrane alpha-helices. Biochim. Biophys. Acta, 1429, 113-128.
-
(1998)
Biochim. Biophys. Acta
, vol.1429
, pp. 113-128
-
-
Arkin, I.T.1
Brunger, A.T.2
-
23
-
-
0032817780
-
Helix packing in polytopic membrane proteins: Role of glycine in transmembrane helix association
-
Javadpour, M. M., Eilers, M., Groesbeek, M. & Smith, S. O. (1999). Helix packing in polytopic membrane proteins: role of glycine in transmembrane helix association. Biophys. J. 77, 1609-1618.
-
(1999)
Biophys. J.
, vol.77
, pp. 1609-1618
-
-
Javadpour, M.M.1
Eilers, M.2
Groesbeek, M.3
Smith, S.O.4
-
24
-
-
0034711958
-
Statistical analysis of amino acid patterns in transmembrane helices: The GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions
-
Senes, A., Gerstein, M. & Engelman, D. M. (2000). Statistical analysis of amino acid patterns in trans-membrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions. J. Mol. Biol. 296, 921-936.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 921-936
-
-
Senes, A.1
Gerstein, M.2
Engelman, D.M.3
-
25
-
-
0028086531
-
Specificity and promiscuity in membrane helix interactions
-
Lemmon, M. A. & Engelman, D. M. (1994). Specificity and promiscuity in membrane helix interactions. Quart. Rev. Biophys. 27, 157-218.
-
(1994)
Quart. Rev. Biophys.
, vol.27
, pp. 157-218
-
-
Lemmon, M.A.1
Engelman, D.M.2
-
26
-
-
0030932407
-
A transmembrane helix dimer: Structure and implications
-
MacKenzie, K. R., Prestegard, J. H. & Engelman, D. M. (1997). A transmembrane helix dimer: structure and implications. Science, 276, 131-133.
-
(1997)
Science
, vol.276
, pp. 131-133
-
-
MacKenzie, K.R.1
Prestegard, J.H.2
Engelman, D.M.3
-
27
-
-
0035979146
-
The Calpha-H⋯O hydrogen bond: A determinant of stability and specificity in trans-membrane helix interactions
-
Senes, A., Ubarretxena-Belandia, I. & Engelman, D. M. (2001). The Calpha-H⋯O hydrogen bond: a determinant of stability and specificity in trans-membrane helix interactions. Proc. Natl Acad. Sci. USA, 98, 9056-9061.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 9056-9061
-
-
Senes, A.1
Ubarretxena-Belandia, I.2
Engelman, D.M.3
-
28
-
-
0033983453
-
Asparagine-mediated self-association of a model transmembrane helix
-
Choma, C., Gratkowski, H., Lear, J. D. & DeGrado, W. F. (2000). Asparagine-mediated self-association of a model transmembrane helix. Nature Struct. Biol. 7, 161-166.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 161-166
-
-
Choma, C.1
Gratkowski, H.2
Lear, J.D.3
DeGrado, W.F.4
-
29
-
-
0007949690
-
Interhelical hydrogen bonding drives strong interactions in membrane proteins
-
Zhou, F. X., Cocco, M. J., Russ, W. P., Brunger, A. T. & Engelman, D. M. (2000). Interhelical hydrogen bonding drives strong interactions in membrane proteins. Nature Struct. Biol. 7, 154-160.
-
(2000)
Nature Struct. Biol.
, vol.7
, pp. 154-160
-
-
Zhou, F.X.1
Cocco, M.J.2
Russ, W.P.3
Brunger, A.T.4
Engelman, D.M.5
-
30
-
-
0036301006
-
Motifs of serine and threonine can drive association of transmembrane helices
-
Dawson, J. P., Weinger, J. S. & Engelman, D. M. (2002). Motifs of serine and threonine can drive association of transmembrane helices. J. Mol. Biol. 316, 799-805.
-
(2002)
J. Mol. Biol.
, vol.316
, pp. 799-805
-
-
Dawson, J.P.1
Weinger, J.S.2
Engelman, D.M.3
-
31
-
-
0036568229
-
Interhelical hydrogen bonds and spatial motifs in membrane proteins: Polar clamps and serine zippers
-
Adamian, L. & Liang, J. (2002). Interhelical hydrogen bonds and spatial motifs in membrane proteins: polar clamps and serine zippers. Proteins: Struct. Funct. Genet. 47, 209-218.
-
(2002)
Proteins: Struct. Funct. Genet.
, vol.47
, pp. 209-218
-
-
Adamian, L.1
Liang, J.2
-
32
-
-
0031563818
-
Helix packing in membrane proteins
-
Bowie, J. U. (1997). Helix packing in membrane proteins. J. Mol. Biol. 272, 780-789.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 780-789
-
-
Bowie, J.U.1
-
33
-
-
0019872825
-
Helix to helix packing in proteins
-
Chothia, C., Levitt, M. & Richardson, D. (1981). Helix to helix packing in proteins. J. Mol. Biol. 145, 215-250.
-
(1981)
J. Mol. Biol.
, vol.145
, pp. 215-250
-
-
Chothia, C.1
Levitt, M.2
Richardson, D.3
-
34
-
-
0030683493
-
Helix packing angle preferences
-
Bowie, J. U. (1997). Helix packing angle preferences. Nature Struct. Biol. 4, 915-917.
-
(1997)
Nature Struct. Biol.
, vol.4
, pp. 915-917
-
-
Bowie, J.U.1
-
35
-
-
0032374082
-
Helix-helix packing angle preferences for finite helix axes
-
Walther, D., Springer, C. & Cohen, F. E. (1998). Helix-helix packing angle preferences for finite helix axes. Proteins: Struct. Funct. Genet. 33, 457-459.
-
(1998)
Proteins: Struct. Funct. Genet.
, vol.33
, pp. 457-459
-
-
Walther, D.1
Springer, C.2
Cohen, F.E.3
-
36
-
-
0027050182
-
Sequence specificity in the dimerization of transmembrane alpha-helices
-
Lemmon, M. A., Flanagan, J. M., Treutlein, H. R., Zhang, J. & Engelman, D. M. (1992). Sequence speci-ficity in the dimerization of transmembrane alpha-helices. Biochemistry, 31, 12719-12725.
-
(1992)
Biochemistry
, vol.31
, pp. 12719-12725
-
-
Lemmon, M.A.1
Flanagan, J.M.2
Treutlein, H.R.3
Zhang, J.4
Engelman, D.M.5
-
37
-
-
0035811042
-
Structure of the transmembrane dimer interface of glycophorin A in membrane bilayers
-
Smith, S. O., Song, D., Shekar, S., Groesbeek, M., Ziliox, M. & Aimoto, S. (2001). Structure of the transmembrane dimer interface of glycophorin A in membrane bilayers. Biochemistry, 40, 6553-6558.
-
(2001)
Biochemistry
, vol.40
, pp. 6553-6558
-
-
Smith, S.O.1
Song, D.2
Shekar, S.3
Groesbeek, M.4
Ziliox, M.5
Aimoto, S.6
-
38
-
-
0026686793
-
Glycophorin A dimerization is driven by specific interactions between transmembrane alpha-helices
-
Lemmon, M. A., Flanagan, J. M., Hunt, J. F., Adair, B. D., Bormann, B. J., Dempsey, C. E. & Engelman, D. M. (1992). Glycophorin A dimerization is driven by specific interactions between transmembrane alpha-helices. J. Biol. Chem. 267, 7683-7689.
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 7683-7689
-
-
Lemmon, M.A.1
Flanagan, J.M.2
Hunt, J.F.3
Adair, B.D.4
Bormann, B.J.5
Dempsey, C.E.6
Engelman, D.M.7
-
39
-
-
0034711953
-
The GxxxG motif: A framework for transmembrane helix-helix association
-
Russ, W. P. & Engelman, D. M. (2000). The GxxxG motif: a framework for transmembrane helix-helix association. J. Mol. Biol. 296, 911-919.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 911-919
-
-
Russ, W.P.1
Engelman, D.M.2
-
40
-
-
0017864999
-
The intramembranous segment of human erythrocyte glycophorin A
-
Furthmayr, H., Galardy, R. E., Tomita, M. & Marchesi, V. T. (1978). The intramembranous segment of human erythrocyte glycophorin A. Arch. Biochem. Biophys. 185, 21-29.
-
(1978)
Arch. Biochem. Biophys.
, vol.185
, pp. 21-29
-
-
Furthmayr, H.1
Galardy, R.E.2
Tomita, M.3
Marchesi, V.T.4
-
41
-
-
0031551579
-
Helix-helix packing in a membrane-like environment
-
Mingarro, I., Elofsson, A. & von Heijne, G. (1997). Helix-helix packing in a membrane-like environment. J. Mol. Biol. 272, 633-641.
-
(1997)
J. Mol. Biol.
, vol.272
, pp. 633-641
-
-
Mingarro, I.1
Elofsson, A.2
Von Heijne, G.3
-
42
-
-
0027092981
-
The glycophorin A transmembrane domain dimer: Sequence-specific propensity for a right-handed supercoil of helices
-
Treutlein, H. R., Lemmon, M. A., Engelman, D. M. & Brunger, A. T. (1992). The glycophorin A trans-membrane domain dimer: sequence-specific propensity for a right-handed supercoil of helices. Biochemistry, 31, 12726-12732.
-
(1992)
Biochemistry
, vol.31
, pp. 12726-12732
-
-
Treutlein, H.R.1
Lemmon, M.A.2
Engelman, D.M.3
Brunger, A.T.4
-
43
-
-
0029847652
-
Improved prediction for the structure of the dimeric transmembrane domain of glycophorin A obtained through global searching
-
Adams, P. D., Engelman, D. M. & Brunger, A. T. (1996). Improved prediction for the structure of the dimeric transmembrane domain of glycophorin A obtained through global searching. Proteins: Struct. Funct. Genet. 26, 257-261.
-
(1996)
Proteins: Struct. Funct. Genet.
, vol.26
, pp. 257-261
-
-
Adams, P.D.1
Engelman, D.M.2
Brunger, A.T.3
-
45
-
-
0032584233
-
Structure-based prediction of the stability of transmembrane helix-helix interactions: The sequence dependence of glycophorin A dimerization
-
MacKenzie, K. R. & Engelman, D. M. (1998). Structure-based prediction of the stability of trans-membrane helix-helix interactions: the sequence dependence of glycophorin A dimerization. Proc. Natl Acad. Sci. USA, 95, 3583-3590.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 3583-3590
-
-
MacKenzie, K.R.1
Engelman, D.M.2
-
46
-
-
0036226583
-
Comparison of helix interactions in membrane and soluble alpha-bundle proteins
-
Eilers, M., Patel, A. B., Liu, W. & Smith, S. O. (2002). Comparison of helix interactions in membrane and soluble alpha-bundle proteins. Biophys. J. 82, 2720-2736.
-
(2002)
Biophys. J.
, vol.82
, pp. 2720-2736
-
-
Eilers, M.1
Patel, A.B.2
Liu, W.3
Smith, S.O.4
-
47
-
-
0032478818
-
The structure of the potassium channel: Molecular basis of K + conduction and selectivity
-
Doyle, D. A., Morais Cabral, J., Pfuetzner, R. A., Kuo, A., Gulbis, J. M., Cohen, S. L. et al. (1998). The structure of the potassium channel: molecular basis of K + conduction and selectivity. Science, 280, 69-77.
-
(1998)
Science
, vol.280
, pp. 69-77
-
-
Doyle, D.A.1
Morais Cabral, J.2
Pfuetzner, R.A.3
Kuo, A.4
Gulbis, J.M.5
Cohen, S.L.6
-
48
-
-
0034644539
-
Cell signaling by receptor tyrosine kinases
-
Schlessinger, J. (2000). Cell signaling by receptor tyrosine kinases. Cell, 103, 211-225.
-
(2000)
Cell
, vol.103
, pp. 211-225
-
-
Schlessinger, J.1
-
49
-
-
0031842104
-
Activation of Neu (ErbB-2) mediated by disulfide bond-induced dimerization reveals a receptor tyrosine kinase dimer interface
-
Burke, C. L. & Stern, D. F. (1998). Activation of Neu (ErbB-2) mediated by disulfide bond-induced dimerization reveals a receptor tyrosine kinase dimer interface. Mol. Cell. Biol. 18, 5371-5379.
-
(1998)
Mol. Cell. Biol.
, vol.18
, pp. 5371-5379
-
-
Burke, C.L.1
Stern, D.F.2
-
50
-
-
0025274249
-
A sequence motif in the transmembrane region of growth factor receptors with tyrosine kinase activity mediates dimerization
-
Sternberg, M. J. & Gullick, W. J. (1990). A sequence motif in the transmembrane region of growth factor receptors with tyrosine kinase activity mediates dimerization. Protein Eng. 3, 245-248.
-
(1990)
Protein Eng.
, vol.3
, pp. 245-248
-
-
Sternberg, M.J.1
Gullick, W.J.2
-
51
-
-
0037085373
-
The single transmembrane domains of ErbB receptors self-associate in cell membranes
-
Mendrola, J. M., Berger, M. B., King, M. C. & Lemmon, M. A. (2002). The single transmembrane domains of ErbB receptors self-associate in cell membranes. J. Biol. Chem. 277, 4704-4712.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 4704-4712
-
-
Mendrola, J.M.1
Berger, M.B.2
King, M.C.3
Lemmon, M.A.4
-
52
-
-
0029867179
-
Principles of helix-helix packing in proteins: The helical lattice superposition model
-
Walther, D., Eisenhaber, F. & Argos, P. (1996). Principles of helix-helix packing in proteins: the helical lattice superposition model. J. Mol. Biol. 255, 536-553.
-
(1996)
J. Mol. Biol.
, vol.255
, pp. 536-553
-
-
Walther, D.1
Eisenhaber, F.2
Argos, P.3
|