-
1
-
-
19044401068
-
Community genomics in microbial ecology and evolution
-
(doi:10.1038/nrmicro1157)
-
Allen, E. E. & Banfield, J. F. 2005 Community genomics in microbial ecology and evolution. Nat. Rev. Microbiol. 3, 489-498. (doi:10.1038/ nrmicro1157)
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 489-498
-
-
Allen, E.E.1
Banfield, J.F.2
-
2
-
-
0033972854
-
Genetic variation: Molecular mechanisms and impact on microbial evolution
-
(doi:10.1111/j.1574-6976.2000.tb00529.x)
-
Arber, W. 2000 Genetic variation: molecular mechanisms and impact on microbial evolution. FEMS Microbiol. Rev. 24, 1-7. (doi:10.1111/j.1574-6976. 2000.tb00529.x)
-
(2000)
FEMS Microbiol. Rev.
, vol.24
, pp. 1-7
-
-
Arber, W.1
-
3
-
-
0011215011
-
Classification of procaryotic organisms and the concept of bacterial speciation
-
(ed. D. R. Boone, R. W. Castenholz & G. M. Garrity), 2nd edn. New York, NY: Springer
-
Brenner, D. J., Staley, J. T. & Krieg, N. R. 2001 Classification of procaryotic organisms and the concept of bacterial speciation. In Bergey's manual of systematic bacteriology, vol. 1 (ed. D. R. Boone, R. W. Castenholz & G. M. Garrity), pp. 27-31, 2nd edn. New York, NY: Springer.
-
(2001)
Bergey's Manual of Systematic Bacteriology
, vol.1
, pp. 27-31
-
-
Brenner, D.J.1
Staley, J.T.2
Krieg, N.R.3
-
4
-
-
15944379273
-
Towards a prokaryotic genomic taxonomy
-
(doi:10.1016/j.femsre.2004.11.004)
-
Coenye, T., Gevers, D., Van de Peer, Y., Vandamme, P. & Swings, J. 2005 Towards a prokaryotic genomic taxonomy. FEMS Microbiol. Rev. 29, 147-167. (doi:10.1016/j.femsre.2004.11.004)
-
(2005)
FEMS Microbiol. Rev.
, vol.29
, pp. 147-167
-
-
Coenye, T.1
Gevers, D.2
Van De Peer, Y.3
Vandamme, P.4
Swings, J.5
-
5
-
-
0036407157
-
What are bacterial species?
-
(doi:10.1146/annurev.micro.56.012302.160634)
-
Cohan, F. M. 2002 What are bacterial species? Annu. Rev. Microbiol. 56, 457-487. (doi:10.1146/annurev.micro.56.012302.160634)
-
(2002)
Annu. Rev. Microbiol.
, vol.56
, pp. 457-487
-
-
Cohan, F.M.1
-
6
-
-
33751202973
-
Toward a conceptual and operational union of bacterial systematics, ecology, and evolution
-
(doi:10.1098/rstb.2006.1918)
-
Cohan, F. M. 2006 Toward a conceptual and operational union of bacterial systematics, ecology, and evolution. Phil. Trans. R. Soc. B 361, 1985-1996. (doi:10.1098/rstb.2006.1918)
-
(2006)
Phil. Trans. R. Soc. B
, vol.361
, pp. 1985-1996
-
-
Cohan, F.M.1
-
7
-
-
16644395866
-
Does a tree-like phylogeny only exist at the tips in the prokaryotes?
-
(doi:10.1098/rspb.2004.2864)
-
Creevey, C. J., Fitzpatrick, D. A., Philip, G. K., Kinsella, R. J., O'Connell, M. J., Pentony, M. M., Travers, S. A., Wilkinson, M. & McInerney, J. O. 2004 Does a tree-like phylogeny only exist at the tips in the prokaryotes? Proc. Biol. Sci. 271, 2551-2558. (doi:10.1098/rspb.2004.2864)
-
(2004)
Proc. Biol. Sci.
, vol.271
, pp. 2551-2558
-
-
Creevey, C.J.1
Fitzpatrick, D.A.2
Philip, G.K.3
Kinsella, R.J.4
O'Connell, M.J.5
Pentony, M.M.6
Travers, S.A.7
Wilkinson, M.8
McInerney, J.O.9
-
9
-
-
24344500901
-
Knowledge accumulation and resolution of data inconsistencies during the integration of microbial information sources
-
(doi:10.1109/TKDE.2005.131)
-
Dawyndt, P., Vancanneyt, M., De Meyer, H. & Swings, J. 2005 Knowledge accumulation and resolution of data inconsistencies during the integration of microbial information sources. IEEE Trans. Knowledge Data Eng. 17, 1111-1126. (doi:10.1109/TKDE.2005.131)
-
(2005)
IEEE Trans. Knowledge Data Eng.
, vol.17
, pp. 1111-1126
-
-
Dawyndt, P.1
Vancanneyt, M.2
De Meyer, H.3
Swings, J.4
-
11
-
-
0026585263
-
How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity
-
Fox, G. E., Wisotzkey, J. D. & Jurtshuk Jr, P. 1992 How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity. Int. J. Syst. Bacteriol. 42, 166-170.
-
(1992)
Int. J. Syst. Bacteriol.
, vol.42
, pp. 166-170
-
-
Fox, G.E.1
Wisotzkey, J.D.2
Jurtshuk Jr., P.3
-
12
-
-
23944437942
-
Opinion: Re-evaluating prokaryotic species
-
(doi:10.1038/nrmicro1236)
-
Gevers, D. et al. 2005 Opinion: re-evaluating prokaryotic species. Nat. Rev. Microbiol. 3, 733-739. (doi:10.1038/nrmicro1236)
-
(2005)
Nat. Rev. Microbiol.
, vol.3
, pp. 733-739
-
-
Gevers, D.1
-
13
-
-
0037007637
-
Challenges for taxonomy
-
(doi:10.1038/417017a)
-
Godfray, H. C. 2002 Challenges for taxonomy. Nature 417, 17-19. (doi:10.1038/417017a)
-
(2002)
Nature
, vol.417
, pp. 17-19
-
-
Godfray, H.C.1
-
14
-
-
33751256288
-
Sequences, sequence clusters and bacterial species
-
(doi:10.1098/rstb.2006.1917)
-
Hanage, W. P., Fraser, C. & Spratt, B. G. 2006 Sequences, sequence clusters and bacterial species. Phil. Trans. R. Soc. B 361, 1917-1927. (doi:10.1098/rstb.2006.1917)
-
(2006)
Phil. Trans. R. Soc. B
, vol.361
, pp. 1917-1927
-
-
Hanage, W.P.1
Fraser, C.2
Spratt, B.G.3
-
15
-
-
24944587193
-
Towards a genome-based taxonomy for prokaryotes
-
(doi:10.1128/JB.187.18.6258-6264.2005)
-
Konstantinidis, K. T. & Tiedje, J. M. 2005 Towards a genome-based taxonomy for prokaryotes. J. Bacteriol. 187, 6258-6264. (doi:10.1128/JB.187.18. 6258-6264.2005)
-
(2005)
J. Bacteriol.
, vol.187
, pp. 6258-6264
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
16
-
-
33751217150
-
The bacterial species definition in the genomic era
-
(doi:10.1098/rstb.2006.1920)
-
Konstantinidis, K. T., Remette, A. & Tiedje, J. M. 2006 The bacterial species definition in the genomic era. Phil. Trans. R. Soc. B 361, 1929-1940. (doi:10.1098/rstb.2006.1920)
-
(2006)
Phil. Trans. R. Soc. B
, vol.361
, pp. 1929-1940
-
-
Konstantinidis, K.T.1
Remette, A.2
Tiedje, J.M.3
-
17
-
-
22244450083
-
The net of life: Reconstructing the microbial phylogenetic network
-
(doi:10.1101/gr.3666505)
-
Kunin, V., Goldovsky, L., Darzentas, N. & Ouzounis, C. A. 2005 The net of life: reconstructing the microbial phylogenetic network. Genome Res. 15, 954-959. (doi:10.1101/gr.3666505)
-
(2005)
Genome Res.
, vol.15
, pp. 954-959
-
-
Kunin, V.1
Goldovsky, L.2
Darzentas, N.3
Ouzounis, C.A.4
-
18
-
-
0035448522
-
When does a clone deserve a name? A perspective on bacterial species based on population genetics
-
(doi:10.1016/S0966-842X(01)02133-3)
-
Lan, R. & Reeves, P. R. 2001 When does a clone deserve a name? A perspective on bacterial species based on population genetics. Trends Microbiol. 9, 419-424. (doi:10.1016/S0966-842X(01)02133-3)
-
(2001)
Trends Microbiol.
, vol.9
, pp. 419-424
-
-
Lan, R.1
Reeves, P.R.2
-
19
-
-
0037026538
-
Prokaryote taxonomy online: Challenges ahead
-
(doi:10.1038/419015c)
-
Oren, A. & Stackebrandt, E. 2002 Prokaryote taxonomy online: challenges ahead. Nature 419, 15. (doi:10.1038/419015c)
-
(2002)
Nature
, vol.419
, pp. 15
-
-
Oren, A.1
Stackebrandt, E.2
-
20
-
-
0242523909
-
The uncultured microbial majority
-
(doi:10.1146/annurev.micro.57.030502.090759)
-
Rappe, M. S. & Giovannoni, S. J. 2003 The uncultured microbial majority. Annu. Rev. Microbiol. 57, 369-394. (doi:10.1146/annurev.micro.57. 030502.090759)
-
(2003)
Annu. Rev. Microbiol.
, vol.57
, pp. 369-394
-
-
Rappe, M.S.1
Giovannoni, S.J.2
-
21
-
-
0035174578
-
The species concept for prokaryotes
-
(doi:10.1111/j.1574-6976.2001.tb00571.x)
-
Rossello-Mora, R. & Amann, R. 2001 The species concept for prokaryotes. FEMS Microbiol. Rev. 25, 39-67. (doi:10.1111/j.1574-6976.2001. tb00571.x)
-
(2001)
FEMS Microbiol. Rev.
, vol.25
, pp. 39-67
-
-
Rossello-Mora, R.1
Amann, R.2
-
22
-
-
0028028182
-
Taxonomic note: A place for DNA: DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
-
Stackebrandt, E. & Goebel, B. M. 1994 Taxonomic note: a place for DNA : DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int. J. Syst. Bacteriol. 44, 846-849.
-
(1994)
Int. J. Syst. Bacteriol.
, vol.44
, pp. 846-849
-
-
Stackebrandt, E.1
Goebel, B.M.2
-
23
-
-
0035989633
-
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
-
Stackebrandt, E. et al. 2002 Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int. J. Syst. Evol. Microbiol. 52, 1045-1047.
-
(2002)
Int. J. Syst. Evol. Microbiol.
, vol.52
, pp. 1045-1047
-
-
Stackebrandt, E.1
-
24
-
-
0002952834
-
Classification of prokaryotic organisms: An overview
-
(ed. N. R. Krieg & J. G. Holt), Baltimore, MD: Williams & Wilkins
-
Staley, J. T. & Krieg, N. R. 1984 Classification of prokaryotic organisms: an overview. In Bergey's manual of systematic bacteriology, vol. 1 (ed. N. R. Krieg & J. G. Holt), pp. 1-4. Baltimore, MD: Williams & Wilkins.
-
(1984)
Bergey's Manual of Systematic Bacteriology
, vol.1
, pp. 1-4
-
-
Staley, J.T.1
Krieg, N.R.2
-
25
-
-
33646584164
-
Visualizing and assessing phylogenetic congruence of core gene sets: A case study of the {gamma}-Proteobacteria
-
(doi:10.1093/molbev/msj113)
-
Susko, E., Leigh, J., Doolittle, W. F. & Bapteste, E. 2006 Visualizing and assessing phylogenetic congruence of core gene sets: a case study of the {gamma}-Proteobacteria. Mol. Biol. Evol. 23, 1019-1030. (doi:10.1093/molbev/msj113)
-
(2006)
Mol. Biol. Evol.
, vol.23
, pp. 1019-1030
-
-
Susko, E.1
Leigh, J.2
Doolittle, W.F.3
Bapteste, E.4
-
26
-
-
0029942146
-
Polyphasic taxonomy, a consensus approach to bacterial systematics
-
Vandamme, P., Pot, B., Gillis, M., de Vos, P., Kersters, K. & Swings, J. 1996 Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol. Rev. 60, 407-438.
-
(1996)
Microbiol. Rev.
, vol.60
, pp. 407-438
-
-
Vandamme, P.1
Pot, B.2
Gillis, M.3
De Vos, P.4
Kersters, K.5
Swings, J.6
-
27
-
-
0032082556
-
A natural species concept for prokaryotes
-
(doi:10.1016/S1369-5274(98)80029-5)
-
Ward, D. M. 1998 A natural species concept for prokaryotes. Curr. Opin. Microbiol. 1, 271-277. (doi:10.1016/S1369-5274(98)80029-5)
-
(1998)
Curr. Opin. Microbiol.
, vol.1
, pp. 271-277
-
-
Ward, D.M.1
-
28
-
-
0000770675
-
Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
-
Wayne, L. G. et al. 1987 Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int. J. Syst. Bacteriol. 37, 463-464.
-
(1987)
Int. J. Syst. Bacteriol.
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
|