Covariability of Vibrio cholerae microdiversity and environmental parameters

Applied and Environmental Microbiology

Volumn 74, Issue 9, 2008, Pages 2915-2920

  Zo, Young Gun ^a,b   Chokesajjawatee, Nipa ^a,c   Arakawa, Eiji ^d   Watanabe, Haruo ^d   Huq, Anwar ^a,b   Colwell, Rita R ^a,b,e  

^a UNIVERSITY OF MARYLAND   (United States)

^b UNIVERSITY OF MARYLAND   (United States)

^c NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

^d NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^e Bldg 142   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; ENVIRONMENTAL MANAGEMENT; PARAMETER ESTIMATION; SIGNAL TRANSDUCTION;

BACTERIAL PHYLOGENETIC SIGNALS; ENVIRONMENTAL PARAMETERS; VIBRIO CHOLERAE MICRODIVERSITY;

BACTERIA;

BACTERIUM; PHYLOGENETICS; SPECIES DIVERSITY;

ARTICLE; BACTERIAL GROWTH; ENVIRONMENTAL FACTOR; GENOTYPE; MICROBIAL DIVERSITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; POPULATION STRUCTURE; VIBRIO CHOLERAE;

BIODIVERSITY; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, BACTERIAL; MOLECULAR SEQUENCE DATA; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; VIBRIO CHOLERAE;

BACTERIA (MICROORGANISMS); VIBRIO CHOLERAE;

EID: 43049092253     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.02139-07     Document Type: Article

References (18)

1. Acinas, S. G., V. Klepac-Ceraj, D. E. Hunt, C. Pharino, I. Ceraj, D. L. Distel, and M. F. Polz. 2004. Fine-scale phylogenetic architecture of a complex bacterial community. Nature 430:551-554.
2. Cohan, F. M. 2002. What are bacterial species? Annu. Rev. Microbiol. 56:457-487.
3. Follows, M. J., S. Dutkiewicz, S. Grant, and S. W. Chisholm. 2007. Emergent biogeography of microbial communities in a model ocean. Science 315:1843-1846.
4. Huq, A., E. B. Small, P. A. West, M. I. Huq, R. Rahman, and R. R. Colwell. 1984. Influence of water temperature, salinity, and pH on survival and growth of toxigenic Vibrio cholerae serovar O1 associated with live copepods in laboratory microcosms. Appl. Environ. Microbiol. 48:420-424.
5. Huq, A., E. B. Small, P. A. West, R. Rahman, and R. R. Colwell. 1983. Ecological relationships between Vibrio cholerae and planktonic crustacean copepods. Appl. Environ. Microbiol. 45:275-283.
6. Kassen, R., and P. B. Rainey. 2004. The ecology and genetics of microbial diversity. Annu. Rev. Microbiol. 58:207-231.
7. Kimmel, D. G., and M. R. Roman. 2004. Long-term trends in mesozooplankton abundance in Chesapeake Bay, USA: influence of freshwater input. Mar. Ecol. Prog. Ser. 267:71-83.
8. Legendre, P., and E. D. Gallagher. 2001. Ecologically meaningful transformation for ordination of species data. Oecologia 129:271-280.
9. Lepš, J., and P. Šmilauer. 2003. Multivariate analysis of ecological data using CANOCO. Cambridge University Press, Cambridge, United Kingdom.
10. Louis, V. R., E. Russek-Cohen, N. Choopun, I. N. Rivera, B. Gangle, S. C. Jiang, A. Rubin, J. A. Patz, A. Huq, and R. R. Colwell. 2003. Predictability of Vibrio cholerae in Chesapeake Bay. Appl. Environ. Microbiol. 69:2773-2785.
11. Rao, C. 1964. The use and interpretation of principal component analysis in applied research. Sankhyaá Ser. A 26:329-358.
12. Roman, M., X. Zhang, C. McGilliard, and W. Boicourt. 2005. Seasonal and annual variability in the spatial patterns of plankton biomass in Chesapeake Bay. Limnol. Oceanogr. 50:480-492.
13. Shimada, T., E. Arakawa, K. Itoh, T. Okitsu, A. Matsushima, Y. Asai, S. Yamai, T. Nakazato, G. B. Nair, M. J. Albert, and Y. Takeda. 1994. Extended serotyping scheme for Vibrio cholerae. Curr. Microbiol. 28:175-178.
14. Tamplin, M. L., A. L. Gauzens, A. Huq, D. A. Sack, and R. R. Colwell. 1990. Attachment of Vibrio cholerae serogroup O1 to zooplankton and phytoplankton of Bangladesh waters. Appl. Environ. Microbiol. 56:1977-1980.
15. ter Braak, C. J. F. 1986. Canonical correspondence analysis: a new eigenvector technique for multivariate direct gradient analysis. Ecology 65:1167-1179.
16. ter Braak, C. J. F., and P. Šmilauer. 2002. CANOCO reference manual and CanoDraw for Windows user's guide: software for canonical community ordination (version 4.5). Microcomputer Power, Ithaca, NY.
17. Thompson, J. R., S. Pacocha, C. Pharino, V. Klepac-Ceraj, D. E. Hunt, J. Benoit, R. Sarma-Rupavtarm, D. L. Distel, and M. F. Polz. 2005. Genotypic diversity within a natural coastal bacterioplankton population. Science 307:1311-1313.
18. Zo, Y.-G., and R. R. Colwell. 2008. A simple binomial test for estimating sequencing errors in public repository 16S rRNA sequences. J. Microbiol. Methods 72:166-179.