-
1
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, Linton LM, Birren B, Nusbaum C, Zody MC, et al. (2001) Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
Nusbaum, C.4
Zody, M.C.5
-
2
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E, Rogers J, Abril JF, et al. (2002) Initial sequencing and comparative analysis of the mouse genome. Nature 420: 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Rogers, J.4
Abril, J.F.5
-
3
-
-
0032509302
-
Genome sequence of the nematode C. elegans: A platform for investigating biology
-
Consortium TCeS
-
Consortium TCeS (1998) Genome sequence of the nematode C. elegans: A platform for investigating biology. Science 282: 2012-18.
-
(1998)
Science
, vol.282
, pp. 2012-2018
-
-
-
4
-
-
0035895505
-
The sequence of the human genome
-
Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, et al. (2001) The sequence of the human genome. Science 291: 1304-51.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
Li, P.W.4
Mural, R.J.5
-
5
-
-
0035252410
-
Alternative splicing: Increasing diversity in the proteomic world
-
Graveley BR (2001) Alternative splicing: increasing diversity in the proteomic world. Trends Genet 17: 100-107.
-
(2001)
Trends Genet
, vol.17
, pp. 100-107
-
-
Graveley, B.R.1
-
7
-
-
5044222204
-
How did alternative splicing evolve?
-
Ast G (2004) How did alternative splicing evolve? Nat Rev Genet 5: 773-782.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 773-782
-
-
Ast, G.1
-
8
-
-
2442694425
-
Transcriptome and genome conservation of alternative splicing events in human and mice
-
Sugnet CW, Kent WJ, Ares M Jr, Haussler D (2004) Transcriptome and genome conservation of alternative splicing events in human and mice. Pac Symp Biocomput. pp 66-77.
-
(2004)
Pac Symp Biocomput
, pp. 66-77
-
-
Sugnet, C.W.1
Kent, W.J.2
Ares Jr, M.3
Haussler, D.4
-
9
-
-
33846681383
-
Different levels of alternative splicing among eukaryotes
-
Kim E, Magen A, Ast G (2007) Different levels of alternative splicing among eukaryotes. Nucleic Acid Res 35: 125-131.
-
(2007)
Nucleic Acid Res
, vol.35
, pp. 125-131
-
-
Kim, E.1
Magen, A.2
Ast, G.3
-
10
-
-
0036948420
-
Allosteric cascade of splicesome activation
-
Brow DA (2002) Allosteric cascade of splicesome activation. Annu Rev Genet 36: 333-360.
-
(2002)
Annu Rev Genet
, vol.36
, pp. 333-360
-
-
Brow, D.A.1
-
11
-
-
0013394889
-
Mechanism of alternative pre-messenger RNA splicing
-
Black DL (2003) Mechanism of alternative pre-messenger RNA splicing. Annu Rev Biochem 72: 291-336.
-
(2003)
Annu Rev Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
12
-
-
0034161419
-
Exonic splicing enhancer: Mechanism of action, diversity and role in human genetic diseases
-
Blencowe BJ (2000) Exonic splicing enhancer: Mechanism of action, diversity and role in human genetic diseases. Trends Biochem Sci 25: 106-110.
-
(2000)
Trends Biochem Sci
, vol.25
, pp. 106-110
-
-
Blencowe, B.J.1
-
13
-
-
0036207384
-
Listening to silence and understanding nonsense: Exonic mutations that affect splicing
-
Cartegni L, Chew SL, Krainer AR (2002) Listening to silence and understanding nonsense: exonic mutations that affect splicing. Nat Rev Genet 3: 285-98.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 285-298
-
-
Cartegni, L.1
Chew, S.L.2
Krainer, A.R.3
-
14
-
-
0036429269
-
Finding signals that regulate alternative splicing in the post-genomic era
-
reviews0008
-
Ladd AN, Cooper TA (2002) Finding signals that regulate alternative splicing in the post-genomic era. Genome Biol 3: reviews0008.
-
(2002)
Genome Biol
, vol.3
-
-
Ladd, A.N.1
Cooper, T.A.2
-
15
-
-
22544469467
-
Silencers regulate both constitutive and alternative splicing events in mammals
-
Pozzoh U, Sironi M (2005) Silencers regulate both constitutive and alternative splicing events in mammals. Cell Mol Life Sci 62: 1579-604.
-
(2005)
Cell Mol Life Sci
, vol.62
, pp. 1579-1604
-
-
Pozzoh, U.1
Sironi, M.2
-
16
-
-
23344437521
-
Exon Inclusion Is Dependent on Predictable Exonic Splicing Enhancers
-
Zhang XH, Kangsamaksin T, Chao MS, Banerjee JK, Chasin LA (2005) Exon Inclusion Is Dependent on Predictable Exonic Splicing Enhancers. Mol Cell Biol 25: 7323-32.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 7323-7332
-
-
Zhang, X.H.1
Kangsamaksin, T.2
Chao, M.S.3
Banerjee, J.K.4
Chasin, L.A.5
-
17
-
-
0033835333
-
Sorting out the complexity of SR protein function
-
Graveley BR (2000) Sorting out the complexity of SR protein function. RNA 6: 1197-211.
-
(2000)
RNA
, vol.6
, pp. 1197-1211
-
-
Graveley, B.R.1
-
18
-
-
24944433166
-
Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes
-
Wang J, Philip J, Smith AR, Krainer AR, Zhang MQ (2005) Distribution of SR protein exonic splicing enhancer motifs in human protein-coding genes. Nucleic Acid Res 33: 5053-62.
-
(2005)
Nucleic Acid Res
, vol.33
, pp. 5053-5062
-
-
Wang, J.1
Philip, J.2
Smith, A.R.3
Krainer, A.R.4
Zhang, M.Q.5
-
19
-
-
0037084825
-
Categorization and characterization of transcriptconfirmed constitutively and alternatively spliced introns and exons from human
-
Clark F, Thanaraj TA (2002) Categorization and characterization of transcriptconfirmed constitutively and alternatively spliced introns and exons from human. Hum Mol Genet 11: 451-464.
-
(2002)
Hum Mol Genet
, vol.11
, pp. 451-464
-
-
Clark, F.1
Thanaraj, T.A.2
-
20
-
-
0348122177
-
Prediction and statistical analysis of alternatively spliced exons
-
Thanaraj TA, Stamm S (2003) Prediction and statistical analysis of alternatively spliced exons. Prog Mol Subcell Biol 31: 1-31.
-
(2003)
Prog Mol Subcell Biol
, vol.31
, pp. 1-31
-
-
Thanaraj, T.A.1
Stamm, S.2
-
21
-
-
0038486897
-
Intronic sequences flanking alternatively spliced exons are conserved between human and mouse
-
Sorek R, Ast G (2003) Intronic sequences flanking alternatively spliced exons are conserved between human and mouse. Genome Res 13: 1631-37.
-
(2003)
Genome Res
, vol.13
, pp. 1631-1637
-
-
Sorek, R.1
Ast, G.2
-
22
-
-
4444291467
-
A non-EST-based method for exon-skipping prediction
-
Sorek R, Shemesh R, Cohen Y, Basechess O, Ast G, et al. (2004) A non-EST-based method for exon-skipping prediction. Genome Res 14: 1617-23.
-
(2004)
Genome Res
, vol.14
, pp. 1617-1623
-
-
Sorek, R.1
Shemesh, R.2
Cohen, Y.3
Basechess, O.4
Ast, G.5
-
23
-
-
3042675114
-
Computational comparative analysis of alternative splicing regulation using full-length cDNA of various eukaryotes
-
Itoh H, Washio T, Tomita M (2004) Computational comparative analysis of alternative splicing regulation using full-length cDNA of various eukaryotes. RNA 10: 1005-18.
-
(2004)
RNA
, vol.10
, pp. 1005-1018
-
-
Itoh, H.1
Washio, T.2
Tomita, M.3
-
24
-
-
24644493193
-
Sequence conservation, relative isoform frequencies, and nonsense-mediated decay in evolutionarily conserved alternative splicing
-
Baek D, Green P (2005) Sequence conservation, relative isoform frequencies, and nonsense-mediated decay in evolutionarily conserved alternative splicing. Proc Natl Acad Sci USA 102: 12813-18.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 12813-12818
-
-
Baek, D.1
Green, P.2
-
25
-
-
14544277546
-
Identification and analysis of alternative splicing events conserved in human and mouse
-
Yeo GW, Van Nostrand E, Holste D, Poggio T, Burge CB (2005) Identification and analysis of alternative splicing events conserved in human and mouse. Proc Natl Acad Sci USA 102: 2850-55.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 2850-2855
-
-
Yeo, G.W.1
Van Nostrand, E.2
Holste, D.3
Poggio, T.4
Burge, C.B.5
-
26
-
-
28344452441
-
Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse
-
Zheng CJ, Fu XD, Gribskov M (2005) Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse. RNA 11: 1777-87.
-
(2005)
RNA
, vol.11
, pp. 1777-1787
-
-
Zheng, C.J.1
Fu, X.D.2
Gribskov, M.3
-
27
-
-
34347387984
-
Differing patterns of selection in alternative and constitutive splice sites
-
Garg K, Green P (2007) Differing patterns of selection in alternative and constitutive splice sites. Genome Res 17: 1015-22.
-
(2007)
Genome Res
, vol.17
, pp. 1015-1022
-
-
Garg, K.1
Green, P.2
-
28
-
-
0037370454
-
Effects of GC Content and Mutational Pressure on the Length of Exons and Coding Sequences
-
Xia X, Xie Z, Li WH (2003) Effects of GC Content and Mutational Pressure on the Length of Exons and Coding Sequences. J Mol Evol 56: 362-370.
-
(2003)
J Mol Evol
, vol.56
, pp. 362-370
-
-
Xia, X.1
Xie, Z.2
Li, W.H.3
-
29
-
-
0029789685
-
A Relationship Between GC Content and Coding- Sequence Length
-
Oliver JL, Marin A (1996) A Relationship Between GC Content and Coding- Sequence Length. J Mol Evol 43: 216-223.
-
(1996)
J Mol Evol
, vol.43
, pp. 216-223
-
-
Oliver, J.L.1
Marin, A.2
-
30
-
-
2442655665
-
Detection of novel splice forms in human and mouse using cross-species approach
-
Kan Z, Castle J, Johnson JM, Tsinoremas NF (2004) Detection of novel splice forms in human and mouse using cross-species approach. Pac Symp Biocomput. pp 42-53.
-
(2004)
Pac Symp Biocomput
, pp. 42-53
-
-
Kan, Z.1
Castle, J.2
Johnson, J.M.3
Tsinoremas, N.F.4
-
31
-
-
0034533608
-
An alternative-exon database and statistical analysis
-
Stamm S, Zhu J, Nakai K, Stoilov P, Stoss O, et al. (2000) An alternative-exon database and statistical analysis. DNA Cell Biol 19: 739-756.
-
(2000)
DNA Cell Biol
, vol.19
, pp. 739-756
-
-
Stamm, S.1
Zhu, J.2
Nakai, K.3
Stoilov, P.4
Stoss, O.5
-
32
-
-
1942533477
-
Detection and evaluation of intron retention events in the human transcriptome
-
Galante PA, Sakabe NJ, Kirschbaum-Slager N, de Souza SJ (2004) Detection and evaluation of intron retention events in the human transcriptome. RNA 10: 757-765.
-
(2004)
RNA
, vol.10
, pp. 757-765
-
-
Galante, P.A.1
Sakabe, N.J.2
Kirschbaum-Slager, N.3
de Souza, S.J.4
-
33
-
-
10944256767
-
Systematic identification and analysis of exonic splicing silencer
-
Wang Z, Rolish ME, Yeo G, Tung V, Mawson M, et al. (2004) Systematic identification and analysis of exonic splicing silencer. Cell 119: 831-845.
-
(2004)
Cell
, vol.119
, pp. 831-845
-
-
Wang, Z.1
Rolish, M.E.2
Yeo, G.3
Tung, V.4
Mawson, M.5
-
34
-
-
2642525438
-
Computational definition of sequence motifs governing constitutive exon splicing
-
Zhang XH, Chasin LA (2004) Computational definition of sequence motifs governing constitutive exon splicing. Genes Dev 18: 1241-50.
-
(2004)
Genes Dev
, vol.18
, pp. 1241-1250
-
-
Zhang, X.H.1
Chasin, L.A.2
-
35
-
-
26444593981
-
Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences
-
Xing Y, Lee C (2005) Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences. Proc Natl Acad Sci USA 102: 13526-31.
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 13526-13531
-
-
Xing, Y.1
Lee, C.2
-
36
-
-
0037705467
-
Conservation of human alternative splice events in mouse
-
Thanaraj TA, Clark F, Muilu J (2003) Conservation of human alternative splice events in mouse. Nucleic Acids Res 31: 2544-52.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2544-2552
-
-
Thanaraj, T.A.1
Clark, F.2
Muilu, J.3
-
37
-
-
0028356158
-
Alu sequences in the coding regions of mRNA: A source of protein variability
-
Makalowski W, Mitchell GA, Labuda D (1994) Alu sequences in the coding regions of mRNA: a source of protein variability. Trends Genet 10: 188-193.
-
(1994)
Trends Genet
, vol.10
, pp. 188-193
-
-
Makalowski, W.1
Mitchell, G.A.2
Labuda, D.3
-
38
-
-
0038617729
-
Alternative splicing in the human, mouse and rat genome is associated with an increased frequency of exon creation and/or loss
-
Modrek B, Lee CJ (2003) Alternative splicing in the human, mouse and rat genome is associated with an increased frequency of exon creation and/or loss. Nat Genet 34: 177-180.
-
(2003)
Nat Genet
, vol.34
, pp. 177-180
-
-
Modrek, B.1
Lee, C.J.2
-
39
-
-
0038701605
-
The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons
-
Lev-Maor G, Sorek R, Shomron N, Ast G (2003) The birth of an alternatively spliced exon: 3′ splice-site selection in Alu exons. Science 300: 1288-91.
-
(2003)
Science
, vol.300
, pp. 1288-1291
-
-
Lev-Maor, G.1
Sorek, R.2
Shomron, N.3
Ast, G.4
-
40
-
-
1942534661
-
Minimal Conditions for Exonization of Intronic Sequences: 59 Splice Site Formation in Alu Exons
-
Sorek R, Lev-Maor G, Reznik M, Dagan T, Belinky F, et al. (2004) Minimal Conditions for Exonization of Intronic Sequences: 59 Splice Site Formation in Alu Exons. Mol Cell 14: 221-231.
-
(2004)
Mol Cell
, vol.14
, pp. 221-231
-
-
Sorek, R.1
Lev-Maor, G.2
Reznik, M.3
Dagan, T.4
Belinky, F.5
-
41
-
-
33748596625
-
Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons
-
Zhang XH, Chasin LA (2006) Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons. Proc Natl Acad Sci USA 103: 13427-32.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 13427-13432
-
-
Zhang, X.H.1
Chasin, L.A.2
-
42
-
-
33646145936
-
Do transposable elements really contribute to proteomes?
-
Gotea V, Makalowski W (2006) Do transposable elements really contribute to proteomes? Trends Genet 22: 260-267.
-
(2006)
Trends Genet
, vol.22
, pp. 260-267
-
-
Gotea, V.1
Makalowski, W.2
-
43
-
-
33751012428
-
Alu elements as regulators of gene expression
-
Hasler J, Strub K (2006) Alu elements as regulators of gene expression. Nucleic Acids Res 34: 5491-97.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5491-5497
-
-
Hasler, J.1
Strub, K.2
-
44
-
-
34247360831
-
Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes
-
Alekseyenko AV, Kim N, Lee CJ (2007) Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes. RNA 13: 661-670.
-
(2007)
RNA
, vol.13
, pp. 661-670
-
-
Alekseyenko, A.V.1
Kim, N.2
Lee, C.J.3
-
45
-
-
34748869000
-
Comparative analysis of transposed elements' insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome
-
doi: 10.1186/gb-2007-8-6-r127
-
Sela N, Mersch B, Gal-Mark N, Lev-Maor G, Hotz-Wagenblatt A, et al. (2007) Comparative analysis of transposed elements' insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome. Genome Biol 8: doi: 10.1186/gb-2007-8-6-r127.
-
(2007)
Genome Biol
, vol.8
-
-
Sela, N.1
Mersch, B.2
Gal-Mark, N.3
Lev-Maor, G.4
Hotz-Wagenblatt, A.5
-
46
-
-
37349077216
-
The "Alternative" Choice of Constitutive Exons throughout Evolution
-
Lev-Maor G, Goren A, Sela N, Kim E, Keren H, et al. (2007) The "Alternative" Choice of Constitutive Exons throughout Evolution. Plos Genetics 3: e203.
-
(2007)
Plos Genetics
, vol.3
-
-
Lev-Maor, G.1
Goren, A.2
Sela, N.3
Kim, E.4
Keren, H.5
-
47
-
-
0036337915
-
A genomic view of alternative splicing
-
Modrek B, Lee C (2002) A genomic view of alternative splicing. Nat Genet 30: 13-19.
-
(2002)
Nat Genet
, vol.30
, pp. 13-19
-
-
Modrek, B.1
Lee, C.2
-
48
-
-
0242636197
-
Alternative splicing and evolution
-
Boue S, Letunic I, Bork P (2003) Alternative splicing and evolution. Bioessays 25: 1031-34.
-
(2003)
Bioessays
, vol.25
, pp. 1031-1034
-
-
Boue, S.1
Letunic, I.2
Bork, P.3
-
50
-
-
33745899048
-
Alternative splicing: New insights from global analyses
-
Blencowe BJ (2006) Alternative splicing: new insights from global analyses. Cell 126: 37-47.
-
(2006)
Cell
, vol.126
, pp. 37-47
-
-
Blencowe, B.J.1
-
51
-
-
38049061206
-
Alternative splicing: Current perspectives
-
Kim E, Goren A, Ast G (2007) Alternative splicing: current perspectives. BioEssays 30: 38-47.
-
(2007)
BioEssays
, vol.30
, pp. 38-47
-
-
Kim, E.1
Goren, A.2
Ast, G.3
-
52
-
-
0037669010
-
Low conservation of alternative splicing patterns in the human and mouse genomes
-
Nurtdinov RN, Artamonova II, Mironov AA, Gelfand MS (2003) Low conservation of alternative splicing patterns in the human and mouse genomes. Hum Mol Genet 12: 1313-20.
-
(2003)
Hum Mol Genet
, vol.12
, pp. 1313-1320
-
-
Nurtdinov, R.N.1
Artamonova, I.I.2
Mironov, A.A.3
Gelfand, M.S.4
-
53
-
-
33745394130
-
Alternative splicing and RNA selection pressure-evolutionary consequences for eukaryotic genomes
-
Xing Y, Lee C (2006) Alternative splicing and RNA selection pressure-evolutionary consequences for eukaryotic genomes. Nat Rev Genet 7: 499-509.
-
(2006)
Nat Rev Genet
, vol.7
, pp. 499-509
-
-
Xing, Y.1
Lee, C.2
-
54
-
-
0035510644
-
Origin of alternative splicing by tandem exon duplication
-
Kondrashov FA, Koonin EV (2001) Origin of alternative splicing by tandem exon duplication. Hum Mol Genet 10: 2661-69.
-
(2001)
Hum Mol Genet
, vol.10
, pp. 2661-2669
-
-
Kondrashov, F.A.1
Koonin, E.V.2
-
55
-
-
0037096758
-
Common exon duplication in animals and its role in alternative splicing
-
Letunic I, Copley RR, Bork P (2002) Common exon duplication in animals and its role in alternative splicing. Hum Mol Genet 11: 1561-67.
-
(2002)
Hum Mol Genet
, vol.11
, pp. 1561-1567
-
-
Letunic, I.1
Copley, R.R.2
Bork, P.3
-
56
-
-
0242354129
-
The origin of new genes: Glimpses from the young and old
-
Long M, Betran E, Thornton K, Wang W (2003) The origin of new genes: glimpses from the young and old. Nat Rev Genet 4: 865-875.
-
(2003)
Nat Rev Genet
, vol.4
, pp. 865-875
-
-
Long, M.1
Betran, E.2
Thornton, K.3
Wang, W.4
-
57
-
-
0036064148
-
Alu-containing exons are alternatively spliced
-
Sorek R, Ast G, Graur D (2002) Alu-containing exons are alternatively spliced. Genome Res 12: 1060-67.
-
(2002)
Genome Res
, vol.12
, pp. 1060-1067
-
-
Sorek, R.1
Ast, G.2
Graur, D.3
-
58
-
-
0036337915
-
A genomic view of alternative splicing
-
Modrek B, Lee C (2002) A genomic view of alternative splicing. Nat Genet 30: 13-19.
-
(2002)
Nat Genet
, vol.30
, pp. 13-19
-
-
Modrek, B.1
Lee, C.2
-
59
-
-
32044443159
-
Evolution of alternative splicing after gene duplication
-
Su Z, Wang J, Yu J, Huang X, Gu X (2006) Evolution of alternative splicing after gene duplication. Genome Res 16: 182-189.
-
(2006)
Genome Res
, vol.16
, pp. 182-189
-
-
Su, Z.1
Wang, J.2
Yu, J.3
Huang, X.4
Gu, X.5
-
60
-
-
4344623260
-
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones
-
Imanishi T, Itoh T, Suzuki Y, O'Donovan C, Fukuchi S, et al. (2004) Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones. PLoS Biol 2: e162.
-
(2004)
PLoS Biol
, vol.2
-
-
Imanishi, T.1
Itoh, T.2
Suzuki, Y.3
O'Donovan, C.4
Fukuchi, S.5
-
61
-
-
0042242582
-
ESEfinder: A web resource to identify exonic splicing enhancers
-
Cartegni L, Wang J, Zhu Z, Zhang MQ, Krainer AR (2003) ESEfinder: a web resource to identify exonic splicing enhancers. Nucleic Acids Res 31: 3568-71.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3568-3571
-
-
Cartegni, L.1
Wang, J.2
Zhu, Z.3
Zhang, M.Q.4
Krainer, A.R.5
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