메뉴 건너뛰기




Volumn 43, Issue 3, 1996, Pages 216-223

A relationship between GC content and coding-sequence length

Author keywords

Base composition; Coding sequence length; Compositional heterogeneity; Stop codon density

Indexed keywords

ARTICLE; DNA BASE COMPOSITION; DNA SEQUENCE; EXON; GENETIC CODE; GENOME; OPEN READING FRAME; STOP CODON; VERTEBRATE;

EID: 0029789685     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02338829     Document Type: Article
Times cited : (97)

References (36)
  • 1
    • 0024805395 scopus 로고
    • The isochore organisation of the human genome
    • Bernardi G (1989) The isochore organisation of the human genome, Annu Rev Genet 23:637-661
    • (1989) Annu Rev Genet , vol.23 , pp. 637-661
    • Bernardi, G.1
  • 2
    • 0027722232 scopus 로고
    • The isochore organization of the human genome and its evolutionary history - A review
    • Bernardi G (1993) The isochore organization of the human genome and its evolutionary history - a review. Gene 135:57-66
    • (1993) Gene , vol.135 , pp. 57-66
    • Bernardi, G.1
  • 3
    • 0029587471 scopus 로고
    • The human genome: Organization and evolutionary story
    • Bernardi G (1995) The human genome: organization and evolutionary story. Annu Rev Genet 29:445-476
    • (1995) Annu Rev Genet , vol.29 , pp. 445-476
    • Bernardi, G.1
  • 5
    • 0021098175 scopus 로고
    • Exons - Present from the beginning?
    • Blake C (1983) Exons - present from the beginning? Nature 306:535-537
    • (1983) Nature , vol.306 , pp. 535-537
    • Blake, C.1
  • 6
    • 0021895320 scopus 로고
    • Exons and the evolution of proteins
    • Blake C (1985) Exons and the evolution of proteins. Int Rev Cytol 93:149-185
    • (1985) Int Rev Cytol , vol.93 , pp. 149-185
    • Blake, C.1
  • 7
    • 0029284804 scopus 로고
    • G and C accumulation at silent positions of codons produces additional ORFs
    • Boldögkoi Z, Murvai J, Fodor I (1995) G and C accumulation at silent positions of codons produces additional ORFs. Trends Genet 11: 125-126
    • (1995) Trends Genet , vol.11 , pp. 125-126
    • Boldögkoi, Z.1    Murvai, J.2    Fodor, I.3
  • 8
    • 16144367876 scopus 로고    scopus 로고
    • Generation of overlapping reading frames
    • Cebrat S, Dudek MR (1996) Generation of overlapping reading frames. Trends Genet 12:12
    • (1996) Trends Genet , vol.12 , pp. 12
    • Cebrat, S.1    Dudek, M.R.2
  • 9
    • 0026556891 scopus 로고
    • A universal compositional correlation among codon positions
    • D'Onofrio G, Bernardi G (1992) A universal compositional correlation among codon positions. Gene 110:81-88
    • (1992) Gene , vol.110 , pp. 81-88
    • D'Onofrio, G.1    Bernardi, G.2
  • 10
    • 0028963020 scopus 로고
    • Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores
    • Duret L, Mouchiroud D, Gautier C (1995) Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores. J Mol Evol 40:308-317
    • (1995) J Mol Evol , vol.40 , pp. 308-317
    • Duret, L.1    Mouchiroud, D.2    Gautier, C.3
  • 11
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleischmann RD et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science 269:496-512
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1
  • 12
    • 0028829125 scopus 로고
    • The minimal gene complement of Mycoplasma genitalium
    • Fraser CM et al. (1995) The minimal gene complement of Mycoplasma genitalium. Science 270:397-403
    • (1995) Science , vol.270 , pp. 397-403
    • Fraser, C.M.1
  • 13
    • 0028850576 scopus 로고
    • Distinctive sequence features in protein coding, genic non-coding, and intergenic human DNA
    • Guigó R, Fickett JW (1995) Distinctive sequence features in protein coding, genic non-coding, and intergenic human DNA. J Mol Biol 253:51-60
    • (1995) J Mol Biol , vol.253 , pp. 51-60
    • Guigó, R.1    Fickett, J.W.2
  • 14
    • 0023685544 scopus 로고
    • A survey on intron and exon lengths
    • Hawkins JD (1988) A survey on intron and exon lengths. Nucleic Acids Res 16:9893-9908
    • (1988) Nucleic Acids Res , vol.16 , pp. 9893-9908
    • Hawkins, J.D.1
  • 15
    • 0025122114 scopus 로고
    • On the origin of coding sequences from random open reading frames
    • Höglund M, Säll T, Röhme D (1990) On the origin of coding sequences from random open reading frames. J Mol Evol 30:104-108
    • (1990) J Mol Evol , vol.30 , pp. 104-108
    • Höglund, M.1    Säll, T.2    Röhme, D.3
  • 16
    • 10144239888 scopus 로고
    • Proteins, exons, and molecular evolution
    • Stone EM. Schwartz RJ (eds) Oxford University Press, New York
    • Holland SK, Blake CCF (1990) Proteins, exons, and molecular evolution. In: Stone EM. Schwartz RJ (eds) Intervening sequences in evolution and development. Oxford University Press, New York, p 32
    • (1990) Intervening Sequences in Evolution and Development , pp. 32
    • Holland, S.K.1    Blake, C.C.F.2
  • 17
    • 0024332738 scopus 로고
    • Evolution of chromosome bands: Molecular ecology of noncoding DNA
    • Holmquist GP (1989) Evolution of chromosome bands: molecular ecology of noncoding DNA. J Mol Evol 28:469-486
    • (1989) J Mol Evol , vol.28 , pp. 469-486
    • Holmquist, G.P.1
  • 18
    • 0029100668 scopus 로고
    • Small genomes for better flyers
    • Hughes AL, Hughes MK (1995) Small genomes for better flyers. Nature 377:391
    • (1995) Nature , vol.377 , pp. 391
    • Hughes, A.L.1    Hughes, M.K.2
  • 19
    • 0028307664 scopus 로고
    • Antisense overlapping open reading frames in genes from bacteria to humans
    • Merino E, Balbás P, Puente JL, Bolivar F (1994) Antisense overlapping open reading frames in genes from bacteria to humans. Nucleic Acids Res 22:1903-1908
    • (1994) Nucleic Acids Res , vol.22 , pp. 1903-1908
    • Merino, E.1    Balbás, P.2    Puente, J.L.3    Bolivar, F.4
  • 20
    • 0023413121 scopus 로고
    • Origin of non coding DNA sequences: Molecular fossils of genome evolution
    • Naora H, Miyahara K, Curnow RN (1987) Origin of non coding DNA sequences: molecular fossils of genome evolution. Proc Natl Acad Sci USA 84:6195-6199
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 6195-6199
    • Naora, H.1    Miyahara, K.2    Curnow, R.N.3
  • 21
    • 0001322528 scopus 로고
    • Heterogeneity of GC content within a single bacterial genome and its implications for evolution
    • Nomura M, Sor F, Yamagishi M, Lawson M (1987) Heterogeneity of GC content within a single bacterial genome and its implications for evolution. Cold Spring Harb Symp Quant Biol 52:658-663
    • (1987) Cold Spring Harb Symp Quant Biol , vol.52 , pp. 658-663
    • Nomura, M.1    Sor, F.2    Yamagishi, M.3    Lawson, M.4
  • 22
    • 0028584242 scopus 로고
    • NRSub: A non-redundant data base for the Bacillus subtilis genome
    • Perrière G, Gouy M, Gojobori T (1994) NRSub: a non-redundant data base for the Bacillus subtilis genome. Nucleic Acids Res 22:5525-5529
    • (1994) Nucleic Acids Res , vol.22 , pp. 5525-5529
    • Perrière, G.1    Gouy, M.2    Gojobori, T.3
  • 23
    • 0028821311 scopus 로고
    • The identity of the base following the stop codon determines the efficiency of in vitro translational termination in Escherichia coli
    • Poole ES, Brown CM, Tate WP (1995) The identity of the base following the stop codon determines the efficiency of in vitro translational termination in Escherichia coli. EMBO J 14:151-158
    • (1995) EMBO J , vol.14 , pp. 151-158
    • Poole, E.S.1    Brown, C.M.2    Tate, W.P.3
  • 25
    • 0346595188 scopus 로고
    • Origin of eukaryotic introns: A hypothesis, based on codon distribution statistics in genes, and its implications
    • Senapathy P (1986) Origin of eukaryotic introns: a hypothesis, based on codon distribution statistics in genes, and its implications. Proc Natl Acad Sci USA 83:2133-2137
    • (1986) Proc Natl Acad Sci USA , vol.83 , pp. 2133-2137
    • Senapathy, P.1
  • 26
    • 0023954075 scopus 로고
    • Possible evolution of splice-junction signals in eukaryotic genes from stop codons
    • Senapathy P (1988) Possible evolution of splice-junction signals in eukaryotic genes from stop codons. Proc Natl Acad Sci USA 85: 1129-1133
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 1129-1133
    • Senapathy, P.1
  • 27
    • 0029062766 scopus 로고
    • Introns and the origin of protein-coding genes
    • Senapathy P (1995) Introns and the origin of protein-coding genes. Science 268:1366-1367
    • (1995) Science , vol.268 , pp. 1366-1367
    • Senapathy, P.1
  • 28
    • 0025321246 scopus 로고
    • Splice junctions, branch point sites, and exons: Sequence statistics, identification, and applications to genome project
    • Senapathy P, Shapiro MB, Harris NL (1990) Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project. Methods Enzymol 183:252-278
    • (1990) Methods Enzymol , vol.183 , pp. 252-278
    • Senapathy, P.1    Shapiro, M.B.2    Harris, N.L.3
  • 29
    • 85054231438 scopus 로고
    • Selective use of termination codons and variations in codon choice
    • Hatfield DL, Lee BJ, Pirtle RM (eds) CRC Press, Boca Raton
    • Sharp PM, Burgess CJ, Lloyd AT, Mitchell KJ (1992) Selective use of termination codons and variations in codon choice. In: Hatfield DL, Lee BJ, Pirtle RM (eds) Transfer RNA in protein synthesis. CRC Press, Boca Raton, pp 398-425
    • (1992) Transfer RNA in Protein Synthesis , pp. 398-425
    • Sharp, P.M.1    Burgess, C.J.2    Lloyd, A.T.3    Mitchell, K.J.4
  • 30
    • 0023896608 scopus 로고
    • Structure of vertebrate genes: A statistical analysis implicating selection
    • Smith MW (1988) Structure of vertebrate genes: a statistical analysis implicating selection. J Mol Evol 27:45-55
    • (1988) J Mol Evol , vol.27 , pp. 45-55
    • Smith, M.W.1
  • 33
    • 0026691099 scopus 로고
    • Directional mutation pressure, selection constraints. and genetic equilibria
    • Sueoka N (1992) Directional mutation pressure, selection constraints. and genetic equilibria. J Mol Evol 34:95-114
    • (1992) J Mol Evol , vol.34 , pp. 95-114
    • Sueoka, N.1
  • 34
    • 0039080152 scopus 로고
    • Do exons code for structural or functional units in proteins?
    • Traut TW (1988) Do exons code for structural or functional units in proteins? Proc Natl Acad Sci USA 85:2944-2948
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 2944-2948
    • Traut, T.W.1
  • 35
    • 0028024152 scopus 로고
    • ECD - A totally integrated database of Escherichia coli K12
    • Wahl R, Rice P, Rice CM, Kröger M (1994) ECD - a totally integrated database of Escherichia coli K12. Nucleic Acids Res 22:3450-3455
    • (1994) Nucleic Acids Res , vol.22 , pp. 3450-3455
    • Wahl, R.1    Rice, P.2    Rice, C.M.3    Kröger, M.4
  • 36
    • 0027507346 scopus 로고
    • The evolution of proteins from random amino acid sequences. I. Evidence from the lengthwise distribution of amino acids in modern protein sequences
    • White SH, Jacobs RE (1993) The evolution of proteins from random amino acid sequences. I. Evidence from the lengthwise distribution of amino acids in modern protein sequences. J Mol Evol 36:79-95
    • (1993) J Mol Evol , vol.36 , pp. 79-95
    • White, S.H.1    Jacobs, R.E.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.