-
1
-
-
33644641260
-
Application of sequence-based methods in human microbial ecology
-
16461883
-
Weng L Rubin EM Bristow J Application of sequence-based methods in human microbial ecology. Genome Res 2006 16 316-322 16461883
-
(2006)
Genome Res
, vol.16
, pp. 316-322
-
-
Weng, L.1
Rubin, E.M.2
Bristow, J.3
-
2
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
16741115
-
Gill SR Pop M Deboy RT Eckburg PB Turnbaugh PJ Samuel BS Gordon JI Relman DA Fraser-Liggett CM Nelson KE Metagenomic analysis of the human distal gut microbiome. Science 2006 312 1355-1359 16741115
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
Deboy, R.T.3
Eckburg, P.B.4
Turnbaugh, P.J.5
Samuel, B.S.6
Gordon, J.I.7
Relman, D.A.8
Fraser-Liggett, C.M.9
Nelson, K.E.10
-
3
-
-
33745043692
-
A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism
-
1472243 16735464
-
Sonnenburg ED Sonnenburg JL Manchester JK Hansen EE Chiang HC Gordon JI A hybrid two-component system protein of a prominent human gut symbiont couples glycan sensing in vivo to carbohydrate metabolism. Proc Natl Acad Sci USA 2006 103 8834-8839 1472243 16735464
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 8834-8839
-
-
Sonnenburg, E.D.1
Sonnenburg, J.L.2
Manchester, J.K.3
Hansen, E.E.4
Chiang, H.C.5
Gordon, J.I.6
-
4
-
-
33847291893
-
Quantitative phylogenetic assessment of microbial communities in diverse environments
-
17272687
-
von Mering C Hugenholtz P Raes J Tringe SG Doerks T Jensen LJ Ward N Bork P Quantitative phylogenetic assessment of microbial communities in diverse environments. Science 2007 315 1126-1130 17272687
-
(2007)
Science
, vol.315
, pp. 1126-1130
-
-
von Mering, C.1
Hugenholtz, P.2
Raes, J.3
Tringe, S.G.4
Doerks, T.5
Jensen, L.J.6
Ward, N.7
Bork, P.8
-
6
-
-
35348961403
-
An ecological and evolutionary perspective on human-microbe mutualism and disease
-
17943117
-
Dethlefsen L McFall-Ngai M Relman DA An ecological and evolutionary perspective on human-microbe mutualism and disease. Nature 2007 449 811-818 17943117
-
(2007)
Nature
, vol.449
, pp. 811-818
-
-
Dethlefsen, L.1
McFall-Ngai, M.2
Relman, D.A.3
-
7
-
-
0037383069
-
Potential genomic determinants of hyperthermophily
-
12683966
-
Makarova KS Wolf YI Koonin EV Potential genomic determinants of hyperthermophily. Trends Genet 2003 19 172-176 12683966
-
(2003)
Trends Genet
, vol.19
, pp. 172-176
-
-
Makarova, K.S.1
Wolf, Y.I.2
Koonin, E.V.3
-
8
-
-
0346505465
-
A cross-genomic approach for systematic mapping of phenotypic traits to genes
-
314287 14707173
-
Jim K Parmar K Singh M Tavazoie S A cross-genomic approach for systematic mapping of phenotypic traits to genes. Genome Res 2004 14 109-115 314287 14707173
-
(2004)
Genome Res
, vol.14
, pp. 109-115
-
-
Jim, K.1
Parmar, K.2
Singh, M.3
Tavazoie, S.4
-
9
-
-
0037458108
-
Trait-to-Gene: A computational method for predicting the function of uncharacterized genes
-
12546786
-
Levesque M Shasha D Kim W Surette MG Benfey PN Trait-to-Gene: A computational method for predicting the function of uncharacterized genes. Curr Biol 2003 13 129-133 12546786
-
(2003)
Curr Biol
, vol.13
, pp. 129-133
-
-
Levesque, M.1
Shasha, D.2
Kim, W.3
Surette, M.G.4
Benfey, P.N.5
-
10
-
-
33745456505
-
Ab initio genotype-phenotype association reveals intrinsic modularity in genetic networks
-
1681479 16732191 2006.0005
-
Slonim N Elemento O Tavazoie S Ab initio genotype-phenotype association reveals intrinsic modularity in genetic networks. Mol Syst Biol 2006 2 2006.0005 1681479 16732191
-
(2006)
Mol Syst Biol
, vol.2
-
-
Slonim, N.1
Elemento, O.2
Tavazoie, S.3
-
11
-
-
46249123102
-
Microbial genotype-phenotype mapping by class association rule mining
-
18467347
-
Tamura M D'haeseleer P Microbial genotype-phenotype mapping by class association rule mining. Bioinformatics 2008 24 1523-1529 18467347
-
(2008)
Bioinformatics
, vol.24
, pp. 1523-1529
-
-
Tamura, M.1
D'haeseleer, P.2
-
12
-
-
0038104835
-
Comparing bacterial genomes through conservation profiles
-
430882 12695324
-
Martín MJ Herrero J Mateos A Dopazo J Comparing bacterial genomes through conservation profiles. Genome Res 2003 13 991-998 430882 12695324
-
(2003)
Genome Res
, vol.13
, pp. 991-998
-
-
Martín, M.J.1
Herrero, J.2
Mateos, A.3
Dopazo, J.4
-
14
-
-
0042902833
-
The COG database: An updated version includes eukaryotes
-
222959 12969510
-
Tatusov RL Fedorova ND Jackson JD Jacobs AR Kiryutin B Koonin EV Krylov DM Mazumder R Mekhedov SL Nikolskaya AN Rao BS Smirnov S Sverdlov AV Vasudevan S Wolf YI Yin JJ Natale DA The COG database: An updated version includes eukaryotes. BMC Bioinformatics 2003 4 41 222959 12969510
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
Rao, B.S.11
Smirnov, S.12
Sverdlov, A.V.13
Vasudevan, S.14
Wolf, Y.I.15
Yin, J.J.16
Natale, D.A.17
-
16
-
-
13844266109
-
Genome Properties: A system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics
-
15347579
-
Haft DH Selengut JD Brinkac LM Zafar N White O Genome Properties: A system for the investigation of prokaryotic genetic content for microbiology, genome annotation and comparative genomics. Bioinformatics 2005 21 293-306 15347579
-
(2005)
Bioinformatics
, vol.21
, pp. 293-306
-
-
Haft, D.H.1
Selengut, J.D.2
Brinkac, L.M.3
Zafar, N.4
White, O.5
-
18
-
-
33751404829
-
An integrative genomic approach to uncover molecular mechanisms of prokaryotic traits
-
1636675 17112314
-
Liu Y Li J Sam L Goh CS Gerstein M Lussier YA An integrative genomic approach to uncover molecular mechanisms of prokaryotic traits. PLoS Comput Biol 2006 2 e159 1636675 17112314
-
(2006)
PLoS Comput Biol
, vol.2
-
-
Liu, Y.1
Li, J.2
Sam, L.3
Goh, C.S.4
Gerstein, M.5
Lussier, Y.A.6
-
21
-
-
65249163245
-
Periodontitis Information Diseases Database
-
Periodontitis Information Diseases Database http://www.diseasesdatabase.com/ddb29362.htm
-
-
-
-
22
-
-
9144253910
-
IntEnz, the integrated relational enzyme database
-
308853 14681451
-
Fleischmann A Darsow M Degtyarenko K Fleischmann W Boyce S Axelsen KB Bairoch A Schomburg D Tipton KF Apweiler R IntEnz, the integrated relational enzyme database. Nucleic Acids Res 2004 32 D434-D437 308853 14681451
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Fleischmann, A.1
Darsow, M.2
Degtyarenko, K.3
Fleischmann, W.4
Boyce, S.5
Axelsen, K.B.6
Bairoch, A.7
Schomburg, D.8
Tipton, K.F.9
Apweiler, R.10
-
23
-
-
0037249497
-
The PEDANT genome database
-
165452 12519983
-
Frishman D Mokrejs M Kosykh D Kastenmüller G Kolesov G Zubrzycki I Gruber C Geier B Kaps A Albermann K Volz A Wagner C Fellenberg M Heumann K Mewes HW The PEDANT genome database. Nucleic Acids Res 2003 31 207-211 165452 12519983
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 207-211
-
-
Frishman, D.1
Mokrejs, M.2
Kosykh, D.3
Kastenmüller, G.4
Kolesov, G.5
Zubrzycki, I.6
Gruber, C.7
Geier, B.8
Kaps, A.9
Albermann, K.10
Volz, A.11
Wagner, C.12
Fellenberg, M.13
Heumann, K.14
Mewes, H.W.15
-
24
-
-
0036086784
-
Evaluation of computational metabolic pathway predictions for Helicobacter pylori
-
12050068
-
Paley SM Karp PD Evaluation of computational metabolic pathway predictions for Helicobacter pylori. Bioinformatics 2002 18 715-724 12050068
-
(2002)
Bioinformatics
, vol.18
, pp. 715-724
-
-
Paley, S.M.1
Karp, P.D.2
-
25
-
-
27244436714
-
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes
-
1266070 16246909
-
Karp PD Ouzounis CA Moore-Kochlacs C Goldovsky L Kaipa P Ahrén D Tsoka S Darzentas N Kunin V López-Bigas N Expansion of the BioCyc collection of pathway/genome databases to 160 genomes. Nucleic Acids Res 2005 33 6083-6089 1266070 16246909
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 6083-6089
-
-
Karp, P.D.1
Ouzounis, C.A.2
Moore-Kochlacs, C.3
Goldovsky, L.4
Kaipa, P.5
Ahrén, D.6
Tsoka, S.7
Darzentas, N.8
Kunin, V.9
López-Bigas, N.10
-
26
-
-
22144441943
-
Genome comparisons based on profiles of metabolic pathways
-
Amsterdam: IOS Press Damiani E, Howlett RJ, Jain LC, Ichalkaranje N 16-18 September 2002; Crema, Italy
-
Liao L Kim S Tomb JF Genome comparisons based on profiles of metabolic pathways. Proceedings of the Sixth International Conference on Knowledge-Based Intelligent Information and Engineering Systems: 16-18 September 2002; Crema, Italy Amsterdam: IOS Press Damiani E, Howlett RJ, Jain LC, Ichalkaranje N 2002 469-476
-
(2002)
Proceedings of the Sixth International Conference on Knowledge-Based Intelligent Information and Engineering Systems
, pp. 469-476
-
-
Liao, L.1
Kim, S.2
Tomb, J.F.3
-
27
-
-
4043070854
-
Phylogenetic analysis based on genome-scale metabolic pathway reaction content
-
Hong SH Kim TY Lee SY Phylogenetic analysis based on genome-scale metabolic pathway reaction content. Appl Microbiol Biotechnol 2004 65 203-210 15197509
-
(2004)
Appl Microbiol Biotechnol
, vol.65
, pp. 203-210
-
-
Hong, S.H.1
Kim, T.Y.2
Lee, S.Y.3
-
28
-
-
33747139057
-
The outcomes of pathway database computations depend on pathway ontology
-
1540720 16893953
-
Green ML Karp PD The outcomes of pathway database computations depend on pathway ontology. Nucleic Acids Res 2006 34 3687-3697 1540720 16893953
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 3687-3697
-
-
Green, M.L.1
Karp, P.D.2
-
29
-
-
33644877904
-
MetaCyc: A mulit-organism database of metabolic pathways and enzymes
-
1347490 16381923
-
Caspi R Fulcher CA Hopkinson R Ingraham J Kaipa P Krummenacker M Paley S Pick J Rhee SY Tissier C Zhang P Karp PD MetaCyc: A mulit-organism database of metabolic pathways and enzymes. Nucleic Acids Res 2006 34 D511-D516 1347490 16381923
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Caspi, R.1
Fulcher, C.A.2
Hopkinson, R.3
Ingraham, J.4
Kaipa, P.5
Krummenacker, M.6
Paley, S.7
Pick, J.8
Rhee, S.Y.9
Tissier, C.10
Zhang, P.11
Karp, P.D.12
-
31
-
-
0004234375
-
-
Heidelberg: Spektrum Akademischer Verlag GmbH
-
Michal G Biochemical Pathways Heidelberg: Spektrum Akademischer Verlag GmbH 1999
-
(1999)
Biochemical Pathways
-
-
Michal, G.1
-
32
-
-
84888297371
-
ExPASy - Biochemical Pathways
-
ExPASy - Biochemical Pathways http://www.expasy.org/tools/pathways/
-
-
-
-
33
-
-
0242410408
-
Benchmarking attribute selection techniques for data mining
-
Hall MA Holmes G Benchmarking attribute selection techniques for data mining. IEEE Trans Knowledge Data Eng 2003 15 1-16
-
(2003)
IEEE Trans Knowledge Data Eng
, vol.15
, pp. 1-16
-
-
Hall, M.A.1
Holmes, G.2
-
34
-
-
0027002164
-
The feature selection problem: Traditional methods and a new algorithm
-
Cambridge: MIT Press July 12-16, 1992; San Jose, California
-
Kira K Rendell LA The feature selection problem: Traditional methods and a new algorithm. Proceedings of the Tenth National Conference on Artificial Intelligence: July 12-16, 1992; San Jose, California Cambridge: MIT Press 1992 129-134
-
(1992)
Proceedings of the Tenth National Conference on Artificial Intelligence
, pp. 129-134
-
-
Kira, K.1
Rendell, L.A.2
-
35
-
-
85146422424
-
A practical approach to feature selection
-
Aberdeen, Scotland, UK San Francisco, CA: Morgan Kaufmann Publishers Inc. Sleeman DH, Edwards P July 1-3, 1992 Aberdeen, Scotland, UK
-
Kira K Rendell LA A practical approach to feature selection. Proceedings of the Ninth International Conference on Machine Learning: July 1-3, 1992. Aberdeen, Scotland, UK San Francisco, CA: Morgan Kaufmann Publishers Inc. Sleeman DH, Edwards P 1992 249-256
-
(1992)
Proceedings of the Ninth International Conference on Machine Learning
, pp. 249-256
-
-
Kira, K.1
Rendell, L.A.2
-
36
-
-
84992726552
-
Estimating attributes: Analysis and extensions of RELIEF
-
Proceedings Springer Verlag Bergadano F, Raedt LD Catania, Italy, April 6-8, 1994
-
Kononenko I Estimating attributes: Analysis and extensions of RELIEF. Machine Learning: ECML-94: European Conference on Machine Learning, Catania, Italy, April 6-8, 1994. Proceedings Springer Verlag Bergadano F, Raedt LD 1994 171-182
-
(1994)
Machine Learning: ECML-94: European Conference on Machine Learning
, pp. 171-182
-
-
Kononenko, I.1
-
37
-
-
0036161259
-
Gene selection for cancer classification using support vector machines
-
Guyon I Weston J Barnhill S Gene selection for cancer classification using support vector machines. Machine Learning 2002 46 389-422
-
(2002)
Machine Learning
, vol.46
, pp. 389-422
-
-
Guyon, I.1
Weston, J.2
Barnhill, S.3
-
39
-
-
35148814913
-
The methanogenic bacteria
-
Springer Verlag Dworkin M, Falko S, Rosenberg E, Schleifer KH, Stackebrandt E
-
Whitman WB Bowen TL Boone DR The methanogenic bacteria. The Prokaryotes Springer Verlag Dworkin M, Falko S, Rosenberg E, Schleifer KH, Stackebrandt E 2006 3 165-207
-
(2006)
The Prokaryotes
, vol.3
, pp. 165-207
-
-
Whitman, W.B.1
Bowen, T.L.2
Boone, D.R.3
-
40
-
-
0025300402
-
Towards a natural system of organisms: Proposal for the domains Archaea, Bacteria, and Eucarya
-
54159 2112744
-
Woese CR Kandler O Wheelis ML Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. Proc Natl Acad Sci USA 1990 87 4576-4579 54159 2112744
-
(1990)
Proc Natl Acad Sci USA
, vol.87
, pp. 4576-4579
-
-
Woese, C.R.1
Kandler, O.2
Wheelis, M.L.3
-
41
-
-
0027401021
-
Ether polar lipids of methanogenic bacteria: Structures, comparative aspects, and biosyntheses
-
372904 8464404
-
Koga Y Nishihara M Morii H Akagawa-Matsushita M Ether polar lipids of methanogenic bacteria: Structures, comparative aspects, and biosyntheses. Microbiol Rev 1993 57 164-182 372904 8464404
-
(1993)
Microbiol Rev
, vol.57
, pp. 164-182
-
-
Koga, Y.1
Nishihara, M.2
Morii, H.3
Akagawa-Matsushita, M.4
-
42
-
-
0037315018
-
CDP-2,3-Di-O-geranylgeranyl-sn-glycerol: L-serine O-archaetidyltransferase (archaetidylserine synthase) in the methanogenic archaeon Methanothermobacter thermautotrophicus
-
142863 12562787
-
Morii H Koga Y CDP-2,3-Di-O-geranylgeranyl-sn-glycerol: L-serine O-archaetidyltransferase (archaetidylserine synthase) in the methanogenic archaeon Methanothermobacter thermautotrophicus. J Bacteriol 2003 185 1181-1189 142863 12562787
-
(2003)
J Bacteriol
, vol.185
, pp. 1181-1189
-
-
Morii, H.1
Koga, Y.2
-
43
-
-
0842326174
-
Osmotic shock stimulates de novo synthesis of two cardiolipins in an extreme halophilic archaeon
-
13130126
-
Lopalco P Lobasso S Babudri F Corcelli A Osmotic shock stimulates de novo synthesis of two cardiolipins in an extreme halophilic archaeon. J Lipid Res 2004 45 194-201 13130126
-
(2004)
J Lipid Res
, vol.45
, pp. 194-201
-
-
Lopalco, P.1
Lobasso, S.2
Babudri, F.3
Corcelli, A.4
-
44
-
-
3042591086
-
Coenzyme A biosynthesis: Reconstruction of the pathway in Archaea and an evolutionary scenario based on comparative genomics
-
15014152
-
Genschel U Coenzyme A biosynthesis: Reconstruction of the pathway in Archaea and an evolutionary scenario based on comparative genomics. Mol Biol Evol 2004 21 1242-1251 15014152
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1242-1251
-
-
Genschel, U.1
-
45
-
-
27144478660
-
Ribose-5-phosphate biosynthesis in Methanocaldococcus jannaschii occurs in the absence of a pentose-phosphate pathway
-
1273003 16237021
-
Grochowski LL Xu H White RH Ribose-5-phosphate biosynthesis in Methanocaldococcus jannaschii occurs in the absence of a pentose-phosphate pathway. J Bacteriol 2005 187 7382-7389 1273003 16237021
-
(2005)
J Bacteriol
, vol.187
, pp. 7382-7389
-
-
Grochowski, L.L.1
Xu, H.2
White, R.H.3
-
46
-
-
33845456591
-
Heme biosynthesis in Methanosarcina barkeri via a pathway involving two methylation reactions
-
1698242 17028275
-
Buchenau B Kahnt J Heinemann IU Jahn D Thauer RK Heme biosynthesis in Methanosarcina barkeri via a pathway involving two methylation reactions. J Bacteriol 2006 188 8666-8668 1698242 17028275
-
(2006)
J Bacteriol
, vol.188
, pp. 8666-8668
-
-
Buchenau, B.1
Kahnt, J.2
Heinemann, I.U.3
Jahn, D.4
Thauer, R.K.5
-
47
-
-
0019363132
-
Amino acid degradation by anaerobic bacteria
-
6791576
-
Barker HA Amino acid degradation by anaerobic bacteria. Annu Rev Biochem 1981 50 23-40 6791576
-
(1981)
Annu Rev Biochem
, vol.50
, pp. 23-40
-
-
Barker, H.A.1
-
48
-
-
42349106001
-
Syntrophism among Prokaryotes
-
In Springer Verlag Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E
-
Schink B Stams AJM Syntrophism among Prokaryotes. The Prokaryotes Springer Verlag Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E 2006 309-335
-
(2006)
The Prokaryotes
, pp. 309-335
-
-
Schink, B.1
Stams, A.J.M.2
-
51
-
-
0033757759
-
Oral microbial communities: Biofilms, interactions, and genetic systems
-
11018133
-
Kolenbrander PE Oral microbial communities: Biofilms, interactions, and genetic systems. Annu Rev Microbiol 2000 54 413-437 11018133
-
(2000)
Annu Rev Microbiol
, vol.54
, pp. 413-437
-
-
Kolenbrander, P.E.1
-
53
-
-
0029905310
-
Highly toxic clone of Actinobacillus actinomycetemcomitans in geographically widespread cases of juvenile periodontitis in adolescents of African origin
-
229068 8735124
-
Haubek D Poulsen K Westergaard J Dahlèn G Kilian M Highly toxic clone of Actinobacillus actinomycetemcomitans in geographically widespread cases of juvenile periodontitis in adolescents of African origin. J Clin Microbiol 1996 34 1576-1578 229068 8735124
-
(1996)
J Clin Microbiol
, vol.34
, pp. 1576-1578
-
-
Haubek, D.1
Poulsen, K.2
Westergaard, J.3
Dahlèn, G.4
Kilian, M.5
-
54
-
-
0030716759
-
Racial tropism of a highly toxic clone of Actinobacillus actinomycetemcomitans associated with juvenile periodontitis
-
230118 9399490
-
Haubek D Dirienzo JM Tinoco EM Westergaard J López NJ Chung CP Poulsen K Kilian M Racial tropism of a highly toxic clone of Actinobacillus actinomycetemcomitans associated with juvenile periodontitis. J Clin Microbiol 1997 35 3037-3042 230118 9399490
-
(1997)
J Clin Microbiol
, vol.35
, pp. 3037-3042
-
-
Haubek, D.1
Dirienzo, J.M.2
Tinoco, E.M.3
Westergaard, J.4
López, N.J.5
Chung, C.P.6
Poulsen, K.7
Kilian, M.8
-
55
-
-
15544370148
-
A mouthful of microbes
-
15790840
-
Pennisi E A mouthful of microbes. Science 2005 307 1899-1901 15790840
-
(2005)
Science
, vol.307
, pp. 1899-1901
-
-
Pennisi, E.1
-
56
-
-
0025664007
-
Ammonia as a potential mediator of adult human periodontal infection: Inhibition of neutrophil function
-
2088228
-
Niederman R Brunkhorst B Smith S Weinreb RN Ryder MI Ammonia as a potential mediator of adult human periodontal infection: Inhibition of neutrophil function. Arch Oral Biol 1990 35 Suppl 205S-209S 2088228
-
(1990)
Arch Oral Biol
, vol.35
, Issue.SUPPL.
-
-
Niederman, R.1
Brunkhorst, B.2
Smith, S.3
Weinreb, R.N.4
Ryder, M.I.5
-
57
-
-
0033873462
-
Metabolic pathways for cytotoxic end product formation from glutamate- and aspartate-containing peptides by Porphyromonas gingivalis
-
111344 10940008
-
Takahashi N Sato T Yamada T Metabolic pathways for cytotoxic end product formation from glutamate- and aspartate-containing peptides by Porphyromonas gingivalis. J Bacteriol 2000 182 4704-4710 111344 10940008
-
(2000)
J Bacteriol
, vol.182
, pp. 4704-4710
-
-
Takahashi, N.1
Sato, T.2
Yamada, T.3
-
58
-
-
0023021082
-
1985 Kreshover lecture. Molecular factors influencing neutrophil defects in periodontal disease
-
3023465
-
Genco RJ Dyke TEV Levine MJ Nelson RD Wilson ME 1985 Kreshover lecture. Molecular factors influencing neutrophil defects in periodontal disease. J Dent Res 1986 65 1379-1391 3023465
-
(1986)
J Dent Res
, vol.65
, pp. 1379-1391
-
-
Genco, R.J.1
Dyke, T.E.V.2
Levine, M.J.3
Nelson, R.D.4
Wilson, M.E.5
-
59
-
-
0023986998
-
Diagnosis and classification of the periodontal diseases
-
3288510
-
Suzuki JB Diagnosis and classification of the periodontal diseases. Dent Clin North Am 1988 32 195-216 3288510
-
(1988)
Dent Clin North Am
, vol.32
, pp. 195-216
-
-
Suzuki, J.B.1
-
60
-
-
25844497517
-
Oral findings and periodontal status in children, adolescents and young adults suffering from renal failure
-
16174271
-
Davidovich E Schwarz Z Davidovitch M Eidelman E Bimstein E Oral findings and periodontal status in children, adolescents and young adults suffering from renal failure. J Clin Periodontol 2005 32 1076-1082 16174271
-
(2005)
J Clin Periodontol
, vol.32
, pp. 1076-1082
-
-
Davidovich, E.1
Schwarz, Z.2
Davidovitch, M.3
Eidelman, E.4
Bimstein, E.5
-
61
-
-
65249097091
-
-
MetaCyc Urea Cycle http://biocyc.org/META/NEW-IMAGE?type=NIL&object= PWY-4984
-
MetaCyc Urea Cycle
-
-
-
63
-
-
0036206041
-
Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586
-
134920 11889109
-
Kapatral V Anderson I Ivanova N Reznik G Los T Lykidis A Bhattacharyya A Bartman A Gardner W Grechkin G Zhu L Vasieva O Chu L Kogan Y Chaga O Goltsman E Bernal A Larsen N D'Souza M Walunas T Pusch G Haselkorn R Fonstein M Kyrpides N Overbeek R Genome sequence and analysis of the oral bacterium Fusobacterium nucleatum strain ATCC 25586. J Bacteriol 2002 184 2005-2018 134920 11889109
-
(2002)
J Bacteriol
, vol.184
, pp. 2005-2018
-
-
Kapatral, V.1
Anderson, I.2
Ivanova, N.3
Reznik, G.4
Los, T.5
Lykidis, A.6
Bhattacharyya, A.7
Bartman, A.8
Gardner, W.9
Grechkin, G.10
Zhu, L.11
Vasieva, O.12
Chu, L.13
Kogan, Y.14
Chaga, O.15
Goltsman, E.16
Bernal, A.17
Larsen, N.18
D'Souza, M.19
Walunas, T.20
Pusch, G.21
Haselkorn, R.22
Fonstein, M.23
Kyrpides, N.24
Overbeek, R.25
more..
-
64
-
-
37549015418
-
-
Entrez Genome Project http://www.ncbi.nlm.nih.gov/sites/entrez?db= genomeprj
-
Entrez Genome Project
-
-
-
68
-
-
0034157380
-
Salivary arginase in patients with adult periodontitis
-
11218511
-
Özmeriç N Elgün S Uraz A Salivary arginase in patients with adult periodontitis. Clin Oral Investig 2000 4 21-24 11218511
-
(2000)
Clin Oral Investig
, vol.4
, pp. 21-24
-
-
Özmeriç, N.1
Elgün, S.2
Uraz, A.3
-
69
-
-
39349098237
-
Periodontal therapy reduces arginase activity in saliva of patients with chronic periodontitis
-
17701233
-
Gheren L Cortelli J Rodrigues E Holzhausen M Saad W Periodontal therapy reduces arginase activity in saliva of patients with chronic periodontitis. Clin Oral Investig 2008 12 67-72 17701233
-
(2008)
Clin Oral Investig
, vol.12
, pp. 67-72
-
-
Gheren, L.1
Cortelli, J.2
Rodrigues, E.3
Holzhausen, M.4
Saad, W.5
-
70
-
-
0030002660
-
Differential regulation of the leukotoxin operon in highly leukotoxic and minimally leukotoxic strains of Actinobacillus actinomycetemcomitans
-
174132
-
Hritz M Fisher E Demuth DR Differential regulation of the leukotoxin operon in highly leukotoxic and minimally leukotoxic strains of Actinobacillus actinomycetemcomitans. Infect Immun 1996 64 2724-2729 174132 8698501
-
(1996)
Infect Immun
, vol.64
, pp. 2724-2729
-
-
Hritz, M.1
Fisher, E.2
Demuth, D.R.3
-
73
-
-
0036308741
-
Enzyme function less conserved than anticipated
-
12051862
-
Rost B Enzyme function less conserved than anticipated. J Mol Biol 2002 318 595-608 12051862
-
(2002)
J Mol Biol
, vol.318
, pp. 595-608
-
-
Rost, B.1
-
75
-
-
65249158393
-
-
Karyn's Genomes http://www.ebi.ac.uk/2can/genomes/genomes.html
-
Karyn's Genomes
-
-
-
78
-
-
33745561205
-
An introduction to variable and feature selection
-
Guyon I Elisseeff A An introduction to variable and feature selection. J Machine Learning Res 2003 3 1157-1182
-
(2003)
J Machine Learning Res
, vol.3
, pp. 1157-1182
-
-
Guyon, I.1
Elisseeff, A.2
-
79
-
-
0003141935
-
A comparative study on feature selection in text categorization
-
San Francisco, CA: Morgan Kaufmann Publishers Inc. Fisher DH 8-12 July 1997; Nashville, Tennessee, USA
-
Yang Y Pedersen JO A comparative study on feature selection in text categorization. Proceedings of the Fourteenth International Conference on Machine Learning: 8-12 July 1997; Nashville, Tennessee, USA San Francisco, CA: Morgan Kaufmann Publishers Inc. Fisher DH 1997 412-420
-
(1997)
Proceedings of the Fourteenth International Conference on Machine Learning
, pp. 412-420
-
-
Yang, Y.1
Pedersen, J.O.2
-
83
-
-
0000468432
-
Estimating continuous distributions in Bayesian classifiers
-
San Francisco, CA: Morgan Kaufmann Publishers Inc. Besnard P, Hanks S 18-20 August 1995; Montreal, Canada
-
John GH Langley P Estimating continuous distributions in Bayesian classifiers. Proceedings of the Eleventh Conference on Uncertainty in Artificial Intelligence: 18-20 August 1995; Montreal, Canada San Francisco, CA: Morgan Kaufmann Publishers Inc. Besnard P, Hanks S 1995 338-345
-
(1995)
Proceedings of the Eleventh Conference on Uncertainty in Artificial Intelligence
, pp. 338-345
-
-
John, G.H.1
Langley, P.2
-
85
-
-
0242410408
-
Benchmarking attribute selection techniques for discrete class data mining
-
Hall M Holmes G Benchmarking attribute selection techniques for discrete class data mining. IEEE Trans Knowledge Data Eng 2003 15 1437-1447
-
(2003)
IEEE Trans Knowledge Data Eng
, vol.15
, pp. 1437-1447
-
-
Hall, M.1
Holmes, G.2
-
86
-
-
0003500248
-
-
San Francisco, California, USA: Morgan Kaufmann Publishers Inc
-
Quinlan JR C4.5: Programs for Machine Learning San Francisco, California, USA: Morgan Kaufmann Publishers Inc. 1993
-
(1993)
C4.5: Programs for Machine Learning
-
-
Quinlan, J.R.1
-
87
-
-
0025725905
-
Instance-based learning algorithms
-
Aha D Kibler D Instance-based learning algorithms. Machine Learning 1991 6 37-66
-
(1991)
Machine Learning
, vol.6
, pp. 37-66
-
-
Aha, D.1
Kibler, D.2
-
88
-
-
0003120218
-
Fast training of support vector machines using sequential minimal optimization
-
Cambridge: MIT Press Schoelkopf B, Burges C, Smola A
-
Platt J Fast training of support vector machines using sequential minimal optimization. Advances in Kernel Methods - Support Vector Learning Cambridge: MIT Press Schoelkopf B, Burges C, Smola A 1999 185-208
-
(1999)
Advances in Kernel Methods - Support Vector Learning
, pp. 185-208
-
-
Platt, J.1
-
89
-
-
0027457620
-
Receiver-operating characteristic (ROC) plots: A fundamental evaluation tool in clinical medicine
-
8472349
-
Zweig MH Campbell G Receiver-operating characteristic (ROC) plots: A fundamental evaluation tool in clinical medicine. Clin Chem 1993 39 561-577 8472349
-
(1993)
Clin Chem
, vol.39
, pp. 561-577
-
-
Zweig, M.H.1
Campbell, G.2
-
90
-
-
26044460461
-
The use of receiver operating characteristic curves in biomedical informatics
-
16198999
-
Lasko TA Bhagwat JG Zou KH Ohno-Machado L The use of receiver operating characteristic curves in biomedical informatics. J Biomed Inform 2005 38 404-415 16198999
-
(2005)
J Biomed Inform
, vol.38
, pp. 404-415
-
-
Lasko, T.A.1
Bhagwat, J.G.2
Zou, K.H.3
Ohno-Machado, L.4
-
91
-
-
0020083498
-
The meaning and use of the area under a receiver operating characteristic (ROC) curve
-
7063747
-
Hanley JA McNeil BJ The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology 1982 143 29-36 7063747
-
(1982)
Radiology
, vol.143
, pp. 29-36
-
-
Hanley, J.A.1
McNeil, B.J.2
-
92
-
-
33646023117
-
An introduction to ROC analysis
-
Fawcett T An introduction to ROC analysis. Pattern Recognition Lett 2006 27 861-874
-
(2006)
Pattern Recognition Lett
, vol.27
, pp. 861-874
-
-
Fawcett, T.1
-
94
-
-
65249104801
-
-
(supplementary material)
-
metaboloMIPS - relevant pathways (supplementary material) http://www.metabolomips.org/relevantPathways/suppl/
-
metaboloMIPS - Relevant pathways
-
-
-
95
-
-
8744232018
-
Automated metabolic reconstruction for Methanococcus jannaschii
-
15810431
-
Tsoka S Simon D Ouzounis CA Automated metabolic reconstruction for Methanococcus jannaschii. Archaea 2004 1 223-229 15810431
-
(2004)
Archaea
, vol.1
, pp. 223-229
-
-
Tsoka, S.1
Simon, D.2
Ouzounis, C.A.3
-
96
-
-
14844349363
-
metaSHARK: Software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
-
552966 15745999
-
Pinney JW Shirley MW McConkey GA Westhead DR metaSHARK: Software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella. Nucleic Acids Res 2005 33 1399-1409 552966 15745999
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1399-1409
-
-
Pinney, J.W.1
Shirley, M.W.2
McConkey, G.A.3
Westhead, D.R.4
-
97
-
-
33646825213
-
Evidence supporting predicted metabolic pathways for Vibrio cholerae: Gene expression data and clinical tests
-
1458520 16682451
-
Shi J Romero PR Schoolnik GK Spormann AM Karp PD Evidence supporting predicted metabolic pathways for Vibrio cholerae: Gene expression data and clinical tests. Nucleic Acids Res 2006 34 2438-2444 1458520 16682451
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 2438-2444
-
-
Shi, J.1
Romero, P.R.2
Schoolnik, G.K.3
Spormann, A.M.4
Karp, P.D.5
-
99
-
-
0036334571
-
From genetic footprinting to antimicrobial drug targets: Examples in cofactor biosynthetic pathways
-
135229 12142426
-
Gerdes SY Scholle MD D'Souza M Bernal A Baev MV Farrell M Kurnasov OV Daugherty MD Mseeh F Polanuyer BM Campbell JW Anantha S Shatalin KY Chowdhury SAK Fonstein MY Osterman AL From genetic footprinting to antimicrobial drug targets: Examples in cofactor biosynthetic pathways. J Bacteriol 2002 184 4555-4572 135229 12142426
-
(2002)
J Bacteriol
, vol.184
, pp. 4555-4572
-
-
Gerdes, S.Y.1
Scholle, M.D.2
D'Souza, M.3
Bernal, A.4
Baev, M.V.5
Farrell, M.6
Kurnasov, O.V.7
Daugherty, M.D.8
Mseeh, F.9
Polanuyer, B.M.10
Campbell, J.W.11
Anantha, S.12
Shatalin, K.Y.13
Chowdhury, S.A.K.14
Fonstein, M.Y.15
Osterman, A.L.16
-
100
-
-
0025771248
-
Isolation and characterization of Bacillus subtilis mutants blocked in the synthesis of pantothenic acid
-
208077 1844812
-
Baigori M Grau R Morbidoni HR de Mendoza D Isolation and characterization of Bacillus subtilis mutants blocked in the synthesis of pantothenic acid. J Bacteriol 1991 173 4240-4242 208077 1844812
-
(1991)
J Bacteriol
, vol.173
, pp. 4240-4242
-
-
Baigori, M.1
Grau, R.2
Morbidoni, H.R.3
de Mendoza, D.4
-
101
-
-
0020003603
-
Genetic and biochemical analyses of pantothenate biosynthesis in Escherichia coli and Salmonella typhimurium
-
216478 7037743
-
Cronan JE Littel KJ Jackowski S Genetic and biochemical analyses of pantothenate biosynthesis in Escherichia coli and Salmonella typhimurium. J Bacteriol 1982 149 916-922 216478 7037743
-
(1982)
J Bacteriol
, vol.149
, pp. 916-922
-
-
Cronan, J.E.1
Littel, K.J.2
Jackowski, S.3
-
102
-
-
0025953961
-
Development of an improved chemically defined minimal medium for Listeria monocytogenes
-
183920 1746963
-
Premaratne RJ Lin WJ Johnson EA Development of an improved chemically defined minimal medium for Listeria monocytogenes. Appl Environ Microbiol 1991 57 3046-3048 183920 1746963
-
(1991)
Appl Environ Microbiol
, vol.57
, pp. 3046-3048
-
-
Premaratne, R.J.1
Lin, W.J.2
Johnson, E.A.3
-
103
-
-
0036796061
-
A pantothenate auxotroph of Mycobacterium tuberculosis is highly attenuated and protects mice against tuberculosis
-
12219086
-
Sambandamurthy VK Wang X Chen B Russell RG Derrick S Collins FM Morris SL Jacobs WR A pantothenate auxotroph of Mycobacterium tuberculosis is highly attenuated and protects mice against tuberculosis. Nat Med 2002 8 1171-1174 12219086
-
(2002)
Nat Med
, vol.8
, pp. 1171-1174
-
-
Sambandamurthy, V.K.1
Wang, X.2
Chen, B.3
Russell, R.G.4
Derrick, S.5
Collins, F.M.6
Morris, S.L.7
Jacobs, W.R.8
-
104
-
-
0015576453
-
Control of pantothenate accumulation in Agrobacterium tumefaciens
-
285273 4347924
-
Kaneshiro T Arthur LO Nickerson KW Control of pantothenate accumulation in Agrobacterium tumefaciens. J Bacteriol 1973 113 619-626 285273 4347924
-
(1973)
J Bacteriol
, vol.113
, pp. 619-626
-
-
Kaneshiro, T.1
Arthur, L.O.2
Nickerson, K.W.3
-
105
-
-
0032932486
-
D-Pantothenate synthesis in Corynebacterium glutamicum and use of panBC and genes encoding L-valine synthesis for D-pantothenate overproduction
-
91285 10223988
-
Sahm H Eggeling L D-Pantothenate synthesis in Corynebacterium glutamicum and use of panBC and genes encoding L-valine synthesis for D-pantothenate overproduction. Appl Environ Microbiol 1999 65 1973 1979-91285 10223988
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 1973-1979
-
-
Sahm, H.1
Eggeling, L.2
-
106
-
-
10344264978
-
Metabolic interdependence of obligate intracellular bacteria and their insect hosts
-
539007 15590782
-
Zientz E Dandekar T Gross R Metabolic interdependence of obligate intracellular bacteria and their insect hosts. Microbiol Mol Biol Rev 2004 68 745-770 539007 15590782
-
(2004)
Microbiol Mol Biol Rev
, vol.68
, pp. 745-770
-
-
Zientz, E.1
Dandekar, T.2
Gross, R.3
-
107
-
-
0037195083
-
The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract
-
137899 12381787
-
Schell MA Karmirantzou M Snel B Vilanova D Berger B Pessi G Zwahlen MC Desiere F Bork P Delley M Pridmore RD Arigoni F The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract. Proc Natl Acad Sci USA 2002 99 14422-14427 137899 12381787
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 14422-14427
-
-
Schell, M.A.1
Karmirantzou, M.2
Snel, B.3
Vilanova, D.4
Berger, B.5
Pessi, G.6
Zwahlen, M.C.7
Desiere, F.8
Bork, P.9
Delley, M.10
Pridmore, R.D.11
Arigoni, F.12
-
109
-
-
0004521804
-
Vitamin requirements of the genus Propionibacterium
-
18139170
-
Delwiche EA Vitamin requirements of the genus Propionibacterium. J Bacteriol 1949 58 395-398 18139170
-
(1949)
J Bacteriol
, vol.58
, pp. 395-398
-
-
Delwiche, E.A.1
-
110
-
-
0035213445
-
Development of a minimal chemically-defined medium for exponential the growth of Streptococcus thermophilus
-
11851809
-
Letort C Juillard V Development of a minimal chemically-defined medium for exponential the growth of Streptococcus thermophilus. J Appl Microbiol 2001 91 1023-1029 11851809
-
(2001)
J Appl Microbiol
, vol.91
, pp. 1023-1029
-
-
Letort, C.1
Juillard, V.2
-
112
-
-
0034089209
-
Molecular cloning and expression analysis of the mevalonate kinase gene from Arabidopsis thaliana
-
10794536
-
Lluch MA Masferrer A Arró M Boronat A Ferrer A Molecular cloning and expression analysis of the mevalonate kinase gene from Arabidopsis thaliana. Plant Mol Biol 2000 42 365-376 10794536
-
(2000)
Plant Mol Biol
, vol.42
, pp. 365-376
-
-
Lluch, M.A.1
Masferrer, A.2
Arró, M.3
Boronat, A.4
Ferrer, A.5
-
113
-
-
0031933109
-
Analysis of the isopentenyl diphosphate isomerase gene family from Arabidopsis thaliana
-
9484444
-
Campbell M Hahn FM Poulter CD Leustek T Analysis of the isopentenyl diphosphate isomerase gene family from Arabidopsis thaliana. Plant Mol Biol 1998 36 323-328 9484444
-
(1998)
Plant Mol Biol
, vol.36
, pp. 323-328
-
-
Campbell, M.1
Hahn, F.M.2
Poulter, C.D.3
Leustek, T.4
-
114
-
-
0033966887
-
Isoprene biosynthesis in Bacillus subtilis via the methylerythritol phosphate pathway
-
10650075
-
Wagner WP Helmig D Fall R Isoprene biosynthesis in Bacillus subtilis via the methylerythritol phosphate pathway. J Nat Prod 2000 63 37-40 10650075
-
(2000)
J Nat Prod
, vol.63
, pp. 37-40
-
-
Wagner, W.P.1
Helmig, D.2
Fall, R.3
-
115
-
-
3042762640
-
Bacillus subtilis ypgA gene is fni, a nonessential gene encoding type 2 isopentenyl diphosphate isomerase
-
14745175
-
Takagi M Kaneda K Shimizu T Hayakawa Y Seto H Kuzuyama T Bacillus subtilis ypgA gene is fni, a nonessential gene encoding type 2 isopentenyl diphosphate isomerase. Biosci Biotechnol Biochem 2004 68 132-137 14745175
-
(2004)
Biosci Biotechnol Biochem
, vol.68
, pp. 132-137
-
-
Takagi, M.1
Kaneda, K.2
Shimizu, T.3
Hayakawa, Y.4
Seto, H.5
Kuzuyama, T.6
-
116
-
-
23844526860
-
Isoprenoid biosynthetic pathways as anti-infective drug targets
-
16042599
-
Rohdich F Bacher A Eisenreich W Isoprenoid biosynthetic pathways as anti-infective drug targets. Biochem Soc Trans 2005 33 785-791 16042599
-
(2005)
Biochem Soc Trans
, vol.33
, pp. 785-791
-
-
Rohdich, F.1
Bacher, A.2
Eisenreich, W.3
-
117
-
-
18544403253
-
Identification, evolution, and essentiality of the mevalonate pathway for isopentenyl diphosphate biosynthesis in gram-positive cocci
-
101949 10894743
-
Wilding EI Brown JR Bryant AP Chalker AF Holmes DJ Ingraham KA Iordanescu S So CY Rosenberg M Gwynn MN Identification, evolution, and essentiality of the mevalonate pathway for isopentenyl diphosphate biosynthesis in gram-positive cocci. J Bacteriol 2000 182 4319-4327 101949 10894743
-
(2000)
J Bacteriol
, vol.182
, pp. 4319-4327
-
-
Wilding, E.I.1
Brown, J.R.2
Bryant, A.P.3
Chalker, A.F.4
Holmes, D.J.5
Ingraham, K.A.6
Iordanescu, S.7
So, C.Y.8
Rosenberg, M.9
Gwynn, M.N.10
-
118
-
-
1542347213
-
Identification of an Archaeal type II isopentenyl diphosphate isomerase in Methanothermobacter thermautotrophicus
-
355898 14996812
-
Barkley SJ Cornish RM Poulter CD Identification of an Archaeal type II isopentenyl diphosphate isomerase in Methanothermobacter thermautotrophicus. J Bacteriol 2004 186 1811-1817 355898 14996812
-
(2004)
J Bacteriol
, vol.186
, pp. 1811-1817
-
-
Barkley, S.J.1
Cornish, R.M.2
Poulter, C.D.3
-
119
-
-
0032412784
-
Biochemistry, cell biology and molecular biology of lipids of Saccharomyces cerevisiae
-
9885152
-
Daum G Lees ND Bard M Dickson R Biochemistry, cell biology and molecular biology of lipids of Saccharomyces cerevisiae. Yeast 1998 14 1471-1510 9885152
-
(1998)
Yeast
, vol.14
, pp. 1471-1510
-
-
Daum, G.1
Lees, N.D.2
Bard, M.3
Dickson, R.4
-
120
-
-
0025977152
-
Cloning and characterization of ERG8, an essential gene of Saccharomyces cerevisiae that encodes phosphomevalonate kinase
-
359713 1846667
-
Tsay YH Robinson GW Cloning and characterization of ERG8, an essential gene of Saccharomyces cerevisiae that encodes phosphomevalonate kinase. Mol Cell Biol 1991 11 620-631 359713 1846667
-
(1991)
Mol Cell Biol
, vol.11
, pp. 620-631
-
-
Tsay, Y.H.1
Robinson, G.W.2
-
121
-
-
0032959593
-
The Saccharomyces cerevisiae mevalonate diphosphate decarboxylase (erg19p) forms homodimers in vivo, and a single substitution in a structurally conserved region impairs dimerization
-
10355117
-
Cordier H Lacombe C Karst F Bergès T The Saccharomyces cerevisiae mevalonate diphosphate decarboxylase (erg19p) forms homodimers in vivo, and a single substitution in a structurally conserved region impairs dimerization. Curr Microbiol 1999 38 290-294 10355117
-
(1999)
Curr Microbiol
, vol.38
, pp. 290-294
-
-
Cordier, H.1
Lacombe, C.2
Karst, F.3
Bergès, T.4
-
122
-
-
0024789309
-
Isopentenyl diphosphate: Dimethylallyl diphosphate isomerase. An improved purification of the enzyme and isolation of the gene from Saccharomyces cerevisiae
-
2681212
-
Anderson MS Muehlbacher M Street IP Proffitt J Poulter CD Isopentenyl diphosphate:dImethylallyl diphosphate isomerase. An improved purification of the enzyme and isolation of the gene from Saccharomyces cerevisiae. J Biol Chem 1989 264 19169-19175 2681212
-
(1989)
J Biol Chem
, vol.264
, pp. 19169-19175
-
-
Anderson, M.S.1
Muehlbacher, M.2
Street, I.P.3
Proffitt, J.4
Poulter, C.D.5
-
123
-
-
0036690439
-
Mevalonate and nonmevalonate pathways for the biosynthesis of isoprene units
-
12353619
-
Kuzuyama T Mevalonate and nonmevalonate pathways for the biosynthesis of isoprene units. Biosci Biotechnol Biochem 2002 66 1619-1627 12353619
-
(2002)
Biosci Biotechnol Biochem
, vol.66
, pp. 1619-1627
-
-
Kuzuyama, T.1
-
124
-
-
0031731697
-
On the absence of the glyceraldehyde 3-phosphate/pyruvate pathway for isoprenoid biosynthesis in fungi and yeasts
-
9835029
-
Disch A Rohmer M On the absence of the glyceraldehyde 3-phosphate/ pyruvate pathway for isoprenoid biosynthesis in fungi and yeasts. FEMS Microbiol Lett 1998 168 201-208 9835029
-
(1998)
FEMS Microbiol Lett
, vol.168
, pp. 201-208
-
-
Disch, A.1
Rohmer, M.2
-
125
-
-
0031015862
-
Biosynthesis of isoprenoids in higher plant chloroplasts proceeds via a mevalonate-independent pathway
-
9009212
-
Lichtenthaler HK Schwender J Disch A Rohmer M Biosynthesis of isoprenoids in higher plant chloroplasts proceeds via a mevalonate-independent pathway. FEBS Lett 1997 400 271-274 9009212
-
(1997)
FEBS Lett
, vol.400
, pp. 271-274
-
-
Lichtenthaler, H.K.1
Schwender, J.2
Disch, A.3
Rohmer, M.4
-
126
-
-
0036851226
-
Elucidation of the methylerythritol phosphate pathway for isoprenoid biosynthesis in bacteria and plastids. A metabolic milestone achieved through genomics
-
1540259 12427975
-
Rodríguez-Concepción M Boronat A Elucidation of the methylerythritol phosphate pathway for isoprenoid biosynthesis in bacteria and plastids. A metabolic milestone achieved through genomics. Plant Physiol 2002 130 1079-1089 1540259 12427975
-
(2002)
Plant Physiol
, vol.130
, pp. 1079-1089
-
-
Rodríguez-Concepción, M.1
Boronat, A.2
-
128
-
-
1842585612
-
Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins
-
15052571
-
Wienkoop S Glinski M Tanaka N Tolstikov V Fiehn O Weckwerth W Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins. Rapid Commun Mass Spectrom 2004 18 643-650 15052571
-
(2004)
Rapid Commun Mass Spectrom
, vol.18
, pp. 643-650
-
-
Wienkoop, S.1
Glinski, M.2
Tanaka, N.3
Tolstikov, V.4
Fiehn, O.5
Weckwerth, W.6
-
129
-
-
33646825207
-
A spatiotemporal analysis of enzymatic activities associated with carbon metabolism in wild-type and mutant embryos of Arabidopsis using in situ histochemistry
-
16553903
-
Baud S Graham IA A spatiotemporal analysis of enzymatic activities associated with carbon metabolism in wild-type and mutant embryos of Arabidopsis using in situ histochemistry. Plant J 2006 46 155-169 16553903
-
(2006)
Plant J
, vol.46
, pp. 155-169
-
-
Baud, S.1
Graham, I.A.2
-
130
-
-
2642547483
-
Bacillus subtilis GlcK activity requires cysteines within a motif that discriminates microbial glucokinases into two lineages
-
365027 15018644
-
Mesak LR Mesak FM Dahl MK Bacillus subtilis GlcK activity requires cysteines within a motif that discriminates microbial glucokinases into two lineages. BMC Microbiol 2004 4 6 365027 15018644
-
(2004)
BMC Microbiol
, vol.4
, pp. 6
-
-
Mesak, L.R.1
Mesak, F.M.2
Dahl, M.K.3
-
131
-
-
0015319453
-
Initiation of spore germination in glycolytic mutants of Bacillus subtilis
-
247414 4622901
-
Prasad C Diesterhaft M Freese E Initiation of spore germination in glycolytic mutants of Bacillus subtilis. J Bacteriol 1972 110 321-328 247414 4622901
-
(1972)
J Bacteriol
, vol.110
, pp. 321-328
-
-
Prasad, C.1
Diesterhaft, M.2
Freese, E.3
-
132
-
-
0031738566
-
The enzymatic activity of phosphoglycerate mutase from gram-positive endospore-forming bacteria requires Mn2+ and is pH sensitive
-
9830105
-
Chander M Setlow B Setlow P The enzymatic activity of phosphoglycerate mutase from gram-positive endospore-forming bacteria requires Mn2+ and is pH sensitive. Can J Microbiol 1998 44 759-767 9830105
-
(1998)
Can J Microbiol
, vol.44
, pp. 759-767
-
-
Chander, M.1
Setlow, B.2
Setlow, P.3
-
133
-
-
0033215210
-
Pathway alignment: Application to the comparative analysis of glycolytic enzymes
-
1220531 10493919
-
Dandekar T Schuster S Snel B Huynen M Bork P Pathway alignment: application to the comparative analysis of glycolytic enzymes. Biochem J 1999 343 115-124 1220531 10493919
-
(1999)
Biochem J
, vol.343
, pp. 115-124
-
-
Dandekar, T.1
Schuster, S.2
Snel, B.3
Huynen, M.4
Bork, P.5
-
134
-
-
0032970541
-
Glucose metabolism in Chlamydia trachomatis: The'energy parasite' hypothesis revisited
-
10411734
-
Iliffe-Lee ER McClarty G Glucose metabolism in Chlamydia trachomatis: the'energy parasite' hypothesis revisited. Mol Microbiol 1999 33 177-187 10411734
-
(1999)
Mol Microbiol
, vol.33
, pp. 177-187
-
-
Iliffe-Lee, E.R.1
McClarty, G.2
-
135
-
-
0024311484
-
Isolation and characterization of the phosphoglucose isomerase gene from Escherichia coli
-
2549364
-
Froman BE Tait RC Gottlieb LD Isolation and characterization of the phosphoglucose isomerase gene from Escherichia coli. Mol Gen Genet 1989 217 126-131 2549364
-
(1989)
Mol Gen Genet
, vol.217
, pp. 126-131
-
-
Froman, B.E.1
Tait, R.C.2
Gottlieb, L.D.3
-
137
-
-
0032522706
-
The dhnA gene of Escherichia coli encodes a class I fructose bisphosphate aldolase
-
1219373 9531482
-
Thomson GJ Howlett GJ Ashcroft AE Berry A The dhnA gene of Escherichia coli encodes a class I fructose bisphosphate aldolase. Biochem J 1998 331 437-445 1219373 9531482
-
(1998)
Biochem J
, vol.331
, pp. 437-445
-
-
Thomson, G.J.1
Howlett, G.J.2
Ashcroft, A.E.3
Berry, A.4
-
138
-
-
0018461899
-
Mutant analysis of glyceraldehyde 3-phosphate dehydrogenase in Escherichia coli
-
1186599 89843
-
Hillman JD Mutant analysis of glyceraldehyde 3-phosphate dehydrogenase in Escherichia coli. Biochem J 1979 179 99-107 1186599 89843
-
(1979)
Biochem J
, vol.179
, pp. 99-107
-
-
Hillman, J.D.1
-
139
-
-
0015218126
-
Glyceraldehyde phosphate dehydrogenase, phosphoglycerate kinase, and phosphoglyceromutase of Escherichia coli. Simultaneous purification and physical properties
-
4932978
-
D'Alessio G Josse J Glyceraldehyde phosphate dehydrogenase, phosphoglycerate kinase, and phosphoglyceromutase of Escherichia coli. Simultaneous purification and physical properties. J Biol Chem 1971 246 4319-4325 4932978
-
(1971)
J Biol Chem
, vol.246
, pp. 4319-4325
-
-
D'Alessio, G.1
Josse, J.2
-
140
-
-
0036304272
-
Mechanistic implications for Escherichia coli cofactor-dependent phosphoglycerate mutase based on the high-resolution crystal structure of a vanadate complex
-
11884145
-
Bond CS White MF Hunter WN Mechanistic implications for Escherichia coli cofactor-dependent phosphoglycerate mutase based on the high-resolution crystal structure of a vanadate complex. J Mol Biol 2002 316 1071-1081 11884145
-
(2002)
J Mol Biol
, vol.316
, pp. 1071-1081
-
-
Bond, C.S.1
White, M.F.2
Hunter, W.N.3
-
141
-
-
0035955548
-
Crystal structure of the Escherichia coli RNA degradosome component enolase
-
11676541
-
Kühnel K Luisi BF Crystal structure of the Escherichia coli RNA degradosome component enolase. J Mol Biol 2001 313 583-592 11676541
-
(2001)
J Mol Biol
, vol.313
, pp. 583-592
-
-
Kühnel, K.1
Luisi, B.F.2
-
142
-
-
0016304189
-
Pyruvate kinase of Escherichia coli. Its role in supplying nucleoside triphosphates in cells under anaerobic conditions
-
4373448
-
Saeki T Hori M Umezawa H Pyruvate kinase of Escherichia coli. Its role in supplying nucleoside triphosphates in cells under anaerobic conditions. J Biochem 1974 76 631-637 4373448
-
(1974)
J Biochem
, vol.76
, pp. 631-637
-
-
Saeki, T.1
Hori, M.2
Umezawa, H.3
-
143
-
-
0030111235
-
Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli
-
8805245
-
Tatusov RL Mushegian AR Bork P Brown NP Hayes WS Borodovsky M Rudd KE Koonin EV Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli. Curr Biol 1996 6 279-291 8805245
-
(1996)
Curr Biol
, vol.6
, pp. 279-291
-
-
Tatusov, R.L.1
Mushegian, A.R.2
Bork, P.3
Brown, N.P.4
Hayes, W.S.5
Borodovsky, M.6
Rudd, K.E.7
Koonin, E.V.8
-
144
-
-
0030767109
-
Mycoplasma genes: A case for reflective annotation
-
9351179
-
Pollack JD Mycoplasma genes: A case for reflective annotation. Trends Microbiol 1997 5 413-419 9351179
-
(1997)
Trends Microbiol
, vol.5
, pp. 413-419
-
-
Pollack, J.D.1
-
145
-
-
13644258814
-
Influence of low glycolytic activities in gcr1 and gcr2 mutants on the expression of other metabolic pathway genes in Saccharomyces cerevisiae
-
15645478
-
Sasaki H Uemura H Influence of low glycolytic activities in gcr1 and gcr2 mutants on the expression of other metabolic pathway genes in Saccharomyces cerevisiae. Yeast 2005 22 111-127 15645478
-
(2005)
Yeast
, vol.22
, pp. 111-127
-
-
Sasaki, H.1
Uemura, H.2
-
146
-
-
65249097649
-
Die Glykolyse
-
Heidelberg: Spektrum Akademischer Verlag [in German]
-
Stryer L Die Glykolyse. Biochemie [in German] Heidelberg: Spektrum Akademischer Verlag 1995 507-533
-
(1995)
Biochemie
, pp. 507-533
-
-
Stryer, L.1
-
147
-
-
0343488601
-
A reconstruction of the metabolism of Methanococcus jannaschii from sequence data
-
Selkov E, Maltsev N, Olsen GJ, Overbeek R, Whitman WB: A reconstruction of the metabolism of Methanococcus jannaschii from sequence data. Gene 1997, 197:GC11-GC26.
-
(1997)
Gene
, vol.197
-
-
Selkov, E.1
Maltsev, N.2
Olsen, G.J.3
Overbeek, R.4
Whitman, W.B.5
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