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Volumn 34, Issue 13, 2006, Pages 3687-3697

The outcomes of pathway database computations depend on pathway ontology

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOCYC DATABASE; BIOINFORMATICS; CALCULATION; CHEMICAL REACTION; CONCEPT FORMATION; CONTROLLED STUDY; GENE FUNCTION; GENETIC CONSERVATION; GENETIC DATABASE; GENETIC SELECTION; GENOME ANALYSIS; INTERMETHOD COMPARISON; KEGG DATABASE; METABOLIC REGULATION; METABOLISM; METABOLITE; MOLECULAR STABILITY; NONHUMAN; PRIORITY JOURNAL; BIOLOGY; EVALUATION; GENETICS; GENOMICS; LINGUISTICS; METHODOLOGY;

EID: 33747139057     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkl438     Document Type: Article
Times cited : (71)

References (31)
  • 6
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • Enright,A.J., Iliopoulos,I., Kyrpides,N.C. and Ouzounis,C.A. (1999) Protein interaction maps for complete genomes based on gene fusion events. Nature, 402, 86-90.
    • (1999) Nature , vol.402 , pp. 86-90
    • Enright, A.J.1    Iliopoulos, I.2    Kyrpides, N.C.3    Ouzounis, C.A.4
  • 7
    • 0033780375 scopus 로고    scopus 로고
    • Prediction of protein interactions: Metabolic enzymes are frequently involved in gene fusion
    • Tsoka,S. and Ouzounis,C.A. (2000) Prediction of protein interactions: metabolic enzymes are frequently involved in gene fusion. Nature Genet., 26, 141-142.
    • (2000) Nature Genet. , vol.26 , pp. 141-142
    • Tsoka, S.1    Ouzounis, C.A.2
  • 8
    • 0032169271 scopus 로고    scopus 로고
    • Conservation of gene order: A fingerprint of proteins that physically interact
    • Dandekar,T., Snel,B., Huynen,M. and Bork,P. (1998) Conservation of gene order: A fingerprint of proteins that physically interact. Trends Biochem. Sci., 23, 324-328.
    • (1998) Trends Biochem. Sci. , vol.23 , pp. 324-328
    • Dandekar, T.1    Snel, B.2    Huynen, M.3    Bork, P.4
  • 9
    • 2442423854 scopus 로고    scopus 로고
    • Prediction of protein function and pathways in the genome era
    • Gabaldon,T. and Huynen,M.A. (2004) Prediction of protein function and pathways in the genome era. Cell Mol. Life Sci., 61, 930-944.
    • (2004) Cell Mol. Life Sci. , vol.61 , pp. 930-944
    • Gabaldon, T.1    Huynen, M.A.2
  • 15
    • 0042889111 scopus 로고    scopus 로고
    • Identification of functional links between genes using phylogenetic profiles
    • Wu,J., Kasif,S. and DeLisi,C. (2003) Identification of functional links between genes using phylogenetic profiles. Bioinformatics, 19, 1524-1530.
    • (2003) Bioinformatics , vol.19 , pp. 1524-1530
    • Wu, J.1    Kasif, S.2    DeLisi, C.3
  • 16
    • 0037174738 scopus 로고    scopus 로고
    • The society of genes: Networks of functional links between genes from comparative genomics
    • Research 0064
    • Yanai,I. and DeLisi,C. (2002) The society of genes: Networks of functional links between genes from comparative genomics. Genome Biol., 3, Research 0064.
    • (2002) Genome Biol. , vol.3
    • Yanai, I.1    DeLisi, C.2
  • 17
    • 0036533931 scopus 로고    scopus 로고
    • Identifying functional links between genes using conserved chromosomal proximity
    • Yanai,I., Mellor,J.C. and DeLisi,C. (2002) Identifying functional links between genes using conserved chromosomal proximity. Trends Genet., 18, 176-179.
    • (2002) Trends Genet. , vol.18 , pp. 176-179
    • Yanai, I.1    Mellor, J.C.2    DeLisi, C.3
  • 18
    • 0036046771 scopus 로고    scopus 로고
    • Evolution of gene fusions: Horizontal transfer versus independent events
    • Research 0024
    • Yanai,I., Wolf,Y.I. and Koonin,E.V. (2002) Evolution of gene fusions: horizontal transfer versus independent events. Genome Biol., 3, Research 0024.
    • (2002) Genome Biol. , vol.3
    • Yanai, I.1    Wolf, Y.I.2    Koonin, E.V.3
  • 19
    • 0032242111 scopus 로고    scopus 로고
    • Microbial genescapes: Phyletic and functional patterns of ORF distribution among prokaryotes
    • Gaasterland,T. and Ragan,M.A. (1998) Microbial genescapes: Phyletic and functional patterns of ORF distribution among prokaryotes. Microb. Comp. Genomics, 3, 199-217.
    • (1998) Microb. Comp. Genomics , vol.3 , pp. 199-217
    • Gaasterland, T.1    Ragan, M.A.2
  • 20
    • 0036160526 scopus 로고    scopus 로고
    • Computational method to assign microbial genes to pathways
    • Pellegrini,M., Thompson,M., Fierro,J. and Bowers,P. (2001) Computational method to assign microbial genes to pathways. J. Cell Biochem., (Suppl. 37), 106-109.
    • (2001) J. Cell Biochem. , Issue.SUPPL. 37 , pp. 106-109
    • Pellegrini, M.1    Thompson, M.2    Fierro, J.3    Bowers, P.4
  • 21
    • 0033618555 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • Marcotte,E.M., Pellegrini,M., Ng,H.L., Rice,D.W., Yeates,T.O. and Eisenberg,D. (1999) Detecting protein function and protein-protein interactions from genome sequences. Science, 285, 751-753.
    • (1999) Science , vol.285 , pp. 751-753
    • Marcotte, E.M.1    Pellegrini, M.2    Ng, H.L.3    Rice, D.W.4    Yeates, T.O.5    Eisenberg, D.6
  • 23
    • 13244268322 scopus 로고    scopus 로고
    • A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases
    • Green,M.L. and Karp,P.D. (2004) A Bayesian method for identifying missing enzymes in predicted metabolic pathway databases. BMC Bioinformatics, 5, 76.
    • (2004) BMC Bioinformatics , vol.5 , pp. 76
    • Green, M.L.1    Karp, P.D.2
  • 24
    • 19244366327 scopus 로고    scopus 로고
    • Call for an enzyme genomics initiative
    • Karp,P.D. (2004) Call for an enzyme genomics initiative. Genome Biol., 5, 401.
    • (2004) Genome Biol. , vol.5 , pp. 401
    • Karp, P.D.1
  • 25
    • 19344377263 scopus 로고    scopus 로고
    • Identifying protein function - A call for community action
    • Roberts,R.J. (2004) Identifying protein function - a call for community action. PLoS Biol., 2, E42.
    • (2004) PLoS Biol. , vol.2
    • Roberts, R.J.1
  • 26
    • 0033168258 scopus 로고    scopus 로고
    • Integrated pathway-genome databases and their role in drug discovery
    • Karp,P.D., Krummenacker,M., Paley,S. and Wagg,J. (1999) Integrated pathway-genome databases and their role in drug discovery. Trends Biotechnol., 17, 275-281.
    • (1999) Trends Biotechnol. , vol.17 , pp. 275-281
    • Karp, P.D.1    Krummenacker, M.2    Paley, S.3    Wagg, J.4
  • 27
    • 0036578644 scopus 로고    scopus 로고
    • GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways
    • Dahlquist,K.D., Salomonis,N., Vranizan,K., Lawlor,S.C. and Conklin,B.R. (2002) GenMAPP, a new tool for viewing and analyzing microarray data on biological pathways. Nature Genet., 31, 19-20.
    • (2002) Nature Genet. , vol.31 , pp. 19-20
    • Dahlquist, K.D.1    Salomonis, N.2    Vranizan, K.3    Lawlor, S.C.4    Conklin, B.R.5
  • 29
    • 21544461263 scopus 로고    scopus 로고
    • PAX of mind for pathway researchers
    • Luciano,J.S. (2005) PAX of mind for pathway researchers. Drug Discov. Today, 10, 937-942.
    • (2005) Drug Discov. Today , vol.10 , pp. 937-942
    • Luciano, J.S.1
  • 30
    • 28944444766 scopus 로고    scopus 로고
    • Representations of molecular pathways: An evaluation of SBML, PSI MI and BioPAX
    • Stromback,L. and Lambrix,P. (2005) Representations of molecular pathways: An evaluation of SBML, PSI MI and BioPAX. Bioinformatics, 21, 4401-4407.
    • (2005) Bioinformatics , vol.21 , pp. 4401-4407
    • Stromback, L.1    Lambrix, P.2
  • 31
    • 0348049802 scopus 로고    scopus 로고
    • Systems biology markup language: Level 2 and beyond
    • Finney,A. and Hucka,M. (2003) Systems biology markup language: Level 2 and beyond. Biochem. Soc. Trans., 31, 1472-1473.
    • (2003) Biochem. Soc. Trans. , vol.31 , pp. 1472-1473
    • Finney, A.1    Hucka, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.