Linking protein fractionation with multidimensional monolithic reversed-phase peptide chromatography/mass spectrometry enhances protein identification from complex mixtures even in the presence of abundant proteins

Rapid Communications in Mass Spectrometry

Volumn 18, Issue 6, 2004, Pages 643-650

  Wienkoop, Stefanie ^a   Glinski, Mirko ^a   Tanaka, Nobuo ^b   Tolstikov, Vladimir ^a   Fiehn, Oliver ^a   Weckwerth, Wolfram ^a  

^a MAX PLANCK INSTITUTE OF MOLECULAR PLANT PHYSIOLOGY   (Germany)

^b KYOTO INSTITUTE OF TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

COLUMN CHROMATOGRAPHY; ELECTROSPRAY IONIZATION; LIQUID CHROMATOGRAPHY; MOLECULAR BIOLOGY; SILICA; SPECTROMETRY; TISSUE;

CHROMATOGRAPHY-MASS SPECTROMETRY; COMPLEX MIXTURE; FAST PERFORMANCE LIQUID CHROMATOGRAPHIES; LEAF TISSUES; MONOLITHICS; PLANT LEAVES; PROTEIN FRACTIONATION; PROTEIN IDENTIFICATION; REVERSED PHASE; SHOTGUN PROTEOMICS;

PEPTIDES;

ION; ISOPROTEIN; PEPTIDE; PLANT EXTRACT; PROTEIN; SILICON DIOXIDE;

ANALYTIC METHOD; ARABIDOPSIS; ARTICLE; ELECTROSPRAY; FAST PERFORMANCE LIQUID CHROMATOGRAPHY; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MULTIDIMENSIONAL MONOLITHIC REVERSED PHASE PEPTIDE CHROMATOGRAPHY; NONHUMAN; PLANT LEAF; PROTEIN ANALYSIS; PROTEOMICS; REVERSED PHASE LIQUID CHROMATOGRAPHY; TWO DIMENSIONAL LIQUID CHROMATOGRAPHY;

EID: 1842585612     PISSN: 09514198     EISSN: None     Source Type: Journal    
DOI: 10.1002/rcm.1376     Document Type: Article

References (34)

1. Kearney P, Thibault P. J. Bioinformat. Comput. Biol. 2003; 1: 183.
2. Washburn MP, Wolters D, Yates JR. Nat. Biotechnol. 2001; 19: 242.
3. Yi EC, Marelli M, Lee H, Purvine SO, Aebersold R, Aitchison JD, Goodlett DR. Electrophoresis 2002; 23: 3205.
4. Sterner JL, Johnston MV, Nicol GR, Ridge DP. J. Mass Spectrom. 2000; 35: 385.
5. Choi BK, Hercules DM, Gusev AI. J. Chromatogr. A 2001; 907: 337.
6. Chelius D, Bondarenko PV. J. Proteome Res. 2002; 1: 317.
7. Bondarenko PV, Chelius D, Shaler TA. Anal. Chem. 2002; 74: 4741.
8. Weckwerth W, Wenzel K, Fiehn O. Proteomics 2004; 4: 78.
9. Tanaka N, Kobayashi H, Nakanishi K, Minakuchi H, Ishizuka N. Anal. Chem. 2001; 73: 420a.
10. Ishizuka N, Kobayashi H, Minakuchi H, Nakanishi K, Hirao K, Hosoya K, Ikegami T, Tanaka N. J. Chromatogr. A 2002; 960: 85.
11. Motokawa M, Kobayashi H, Ishizuka N, Minakuchi H, Nakanishi K, Jinnai H, Hosoya K, Ikegami T, Tanaka N. J. Chromatogr. A 2002; 961: 53.
12. Walcher W, Oberacher H, Troiani S, Holzl G, Oefner P, Zolla L, Huber CG. J. Chromatogr. B Anal. Technol. Biomed. Life Sci. 2002; 782: 111.
13. Tolstikov V, Lommen A, Nakanishi K, Tanaka N, Fiehn O. Anal. Chem. 2003; 75: 6737.
14. Premstaller A, Oberacher H, Walcher W, Timperio AM, Zolla L, Chervet JP, Cavusoglu N, van Dorsselaer A, Huber CG. Anal. Chem. 2001; 73: 2390.
15. Peng JM, Elias JE, Thoreen CC, Licklider LJ, Gygi SP. J. Proteome Res. 2003; 2: 43.
16. Tabb DL, McDonald WH, Yates JR. J. Proteome Res. 2002; 1: 21.
17. Tanaka N, Kobayashi H. Anal. Bioanal. Chem. 2003; 376: 298.
18. Koller A, Washburn MP, Lange BM, Andon NL, Deciu C, Haynes PA, Hays L, Schieltz D, Ulaszek R, Wei J, Wolters D, Yates JR. Proc. Natl. Acad. Sci. USA 2002; 99: 11969.
19. VerBerkmoes NC, Bundy JL, Hauser L, Asano KG, Razumovskaya J, Larimer F, Hettich RL, Stephenson JL Jr. J. Proteome Res. 2002; 1: 239.
20. Ahmed N, Barker G, Oliva K, Garfin D, Georgiou H, Quinn M, Rice G. Proteomics 2003; 3: 1980.
21. Butt A, Davison MD, Smith GJ, Young JA, Gaskell SJ, Oliver SG, Beynon RJ. Proteomics 2001; 1: 42.
22. Liu CL, Hofstadler SA, Bresson JA, Udseth HR, Tsukuda T, Smith RD, Snyder AP. Anal. Chem. 1998; 70: 1797.
23. Gorg A, Boguth G, Kopf A, Reil G, Parlar H, Weiss W. Proteomics 2002; 2: 1652.
24. Vision TJ, Brown DG, Tanksley SD. Science 2000; 290: 2114.
25. Simillion C, Vandepoele K, Van Montagu MCE, Zabeau M, Van de Peer Y. Proc. Natl. Acad. Sci. USA 2002; 99: 13627.
26. Schoof H, Zaccaria P, Gundlach H, Lemcke K, Rudd S, Kolesov G, Arnold R, Mewes HW, Mayer KFX. Nucleic Acids Res. 2002; 30: 91.
27. Stitt M. http://www.mips.biochem.mpg.de/.
28. Wagner U, Edwards R, Dixon DP, Mauch F. Plant Mol. Biol. 2002; 49: 515.
29. Dixon DP, Davis BG, Edwards R. J. Biol. Chem. 2002; 277: 30859.
30. Caspar T, Huber SC, Somerville C. Plant Physiol. 1985; 79: 11.
31. Fernie AR, Tauberger E, Lytovchenko A, Roessner U, Willmitzer L, Trethewey RN. Planta 2002; 214: 510.
32. Periappuram C, Steinhauer L, Barton DL, Taylor DC, Chatson B, Zou JT. Plant Physiol. 2000; 122: 1193.
33. targetP prediction.http://www.cbs.dtu.dk/services/TargetP/.
34. Available: http://mips.gsf.de/cgi-bin/proj/thal/frame- setter?about&externalanno.html.