-
1
-
-
0028072561
-
The dipeptide permease of Escherichia coli closely resembles other bacterial transport systems and shows growth-phase-dependent expression
-
Abouhamad, W.N. and Manson, M.D. 1994. The dipeptide permease of Escherichia coli closely resembles other bacterial transport systems and shows growth-phase-dependent expression. Mol. Microbial. 14: 1077-1092.
-
(1994)
Mol. Microbial.
, vol.14
, pp. 1077-1092
-
-
Abouhamad, W.N.1
Manson, M.D.2
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schäffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0034069495
-
Gene Ontology: Tool for the unification of biology
-
Ashburner, M., Ball, C.A., Blake, J.A., Botstein, D., Butler, H., Cherry, J.M., Davis, A.P., Dolinski, K., Dwight, S.S., Eppig, J.T., et al. 2000. Gene Ontology: Tool for the unification of biology. Nat. Genet. 25: 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
-
4
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner, F.R., Plunkett III, G., Bloch, C.A., Perna, N.T., Burland, V., Riley, M., Collado-Vides, J., Glasner, J.D., Rode, C.K., Mayhew, G.F., et al. 1997. The complete genome sequence of Escherichia coli K-12. Science 277: 1453-1474.
-
(1997)
Science
, vol.277
, pp. 1453-1474
-
-
Blattner, F.R.1
Plunkett G. III2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
Riley, M.6
Collado-Vides, J.7
Glasner, J.D.8
Rode, C.K.9
Mayhew, G.F.10
-
5
-
-
0031042985
-
Phylogenetic reconstruction using a growing neural network that adopts the topology of a phylogenetic tree
-
Dopazo, J. and Carazo, J.M. 1997. Phylogenetic reconstruction using a growing neural network that adopts the topology of a phylogenetic tree. J. Mol. Evol. 44: 226-233.
-
(1997)
J. Mol. Evol.
, vol.44
, pp. 226-233
-
-
Dopazo, J.1
Carazo, J.M.2
-
6
-
-
0034961107
-
Annotated draft genomic sequence from a Streptococcus pneumoniae type 19F clinical isolate
-
Dopazo, J., Mendoza, A., Herrero, J., Caldara, F., Humbert, Y., Friedli, L., Guerrier, M., Grand-Schenk, E., Gandin, C., De Francesco, M., et al. 2001. Annotated draft genomic sequence from a Streptococcus pneumoniae type 19F clinical isolate. Microbial Drug Resistance 7: 99-125.
-
(2001)
Microbial Drug Resistance
, vol.7
, pp. 99-125
-
-
Dopazo, J.1
Mendoza, A.2
Herrero, J.3
Caldara, F.4
Humbert, Y.5
Friedli, L.6
Guerrier, M.7
Grand-Schenk, E.8
Gandin, C.9
De Francesco, M.10
-
7
-
-
0022203256
-
Phylogenetics and the comparative method
-
Felsenstein, J. 1985. Phylogenetics and the comparative method. Am. Naturalist 125: 1-15.
-
(1985)
Am. Naturalist
, vol.125
, pp. 1-15
-
-
Felsenstein, J.1
-
8
-
-
0033231209
-
Whole genome-based phylogenetic analysis of free-living microorganisms
-
Fitz-Gibbon, S.T. and House, C.H. 1999. Whole genome-based phylogenetic analysis of free-living microorganisms. Nucleic Acids Res. 27: 4218-4222.
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 4218-4222
-
-
Fitz-Gibbon, S.T.1
House, C.H.2
-
9
-
-
0028748949
-
Growing cell structures - A self-organizing network for unsupervised and supervised learning
-
Fritzke, B. 1994. Growing cell structures - A self-organizing network for unsupervised and supervised learning. Neural Networks 7: 1141-1160.
-
(1994)
Neural Networks
, vol.7
, pp. 1141-1160
-
-
Fritzke, B.1
-
10
-
-
0031610846
-
Constructing multigenome views of whole microbial genomes
-
Gaasterland, T. and Regan, M.A. 1998. Constructing multigenome views of whole microbial genomes. Microb. Comp. Genomics 3: 177-192.
-
(1998)
Microb. Comp. Genomics
, vol.3
, pp. 177-192
-
-
Gaasterland, T.1
Regan, M.A.2
-
11
-
-
0035108235
-
A hierarchical unsupervised growing neural network for clustering gene expression patterns
-
Herrero, J., Valencia, A., and Dopazo, J. 2001. A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics 17: 126-136.
-
(2001)
Bioinformatics
, vol.17
, pp. 126-136
-
-
Herrero, J.1
Valencia, A.2
Dopazo, J.3
-
12
-
-
10544255079
-
Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae
-
Himmelreich, R., Hilbert, H., Plagens, H., Pirkl, E., Li, B.-C., and Herrmann, R. 1996. Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae. Nucl. Acids Res. 24: 4420-4450.
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 4420-4450
-
-
Himmelreich, R.1
Hilbert, H.2
Plagens, H.3
Pirkl, E.4
Li, B.-C.5
Herrmann, R.6
-
13
-
-
0032953228
-
Comparative genomes of Chlamydia pneumoniae and C
-
Kalman, S., Mitchell, W., Marathe, R., Lammel, C., Fan, J., Hyman, R.W., Olinger, L., Grimwood, J., Davis, R.W., Stephens, R.S. 1999. Comparative genomes of Chlamydia pneumoniae and C. Trachomatis. Nat. Genet. 21: 385-389.
-
(1999)
Trachomatis. Nat. Genet.
, vol.21
, pp. 385-389
-
-
Kalman, S.1
Mitchell, W.2
Marathe, R.3
Lammel, C.4
Fan, J.5
Hyman, R.W.6
Olinger, L.7
Grimwood, J.8
Davis, R.W.9
Stephens, R.S.10
-
14
-
-
0003410791
-
Self-organizing maps
-
Springer-Verlag, Berlin, Germany
-
Kohonen, T. 1997. Self-organizing maps. Springer-Verlag, Berlin, Germany.
-
(1997)
-
-
Kohonen, T.1
-
15
-
-
0032855518
-
Gene transfer, speciation, and the evolution of bacterial genomes
-
Lawrence, J.G. 1999. Gene transfer, speciation, and the evolution of bacterial genomes. Curr. Opin. Microbiol. 2: 519-523.
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 519-523
-
-
Lawrence, J.G.1
-
16
-
-
0033918311
-
Whole-genome trees based on the occurrence of folds and orthologs: Implications for comparing genomes on different levels
-
Lin, J. and Gerstein, M. 2000. Whole-genome trees based on the occurrence of folds and orthologs: Implications for comparing genomes on different levels. Genome Res. 10: 808-818.
-
(2000)
Genome Res.
, vol.10
, pp. 808-818
-
-
Lin, J.1
Gerstein, M.2
-
17
-
-
0038561723
-
Supervised neural networks for clustering conditions in DNA array data after reducing noise by clustering gene expression profiles
-
(eds. S. Lin and K. Jonson), Kluwer Academic Publishers, Boston, MA
-
Mateos, A., Herrero, J., Tamames, J., and Dopazo, J. 2002. Supervised neural networks for clustering conditions in DNA array data after reducing noise by clustering gene expression profiles. In Methods for Microarray Data Analysis II (eds. S. Lin and K. Jonson), pp. 91-103. Kluwer Academic Publishers, Boston, MA.
-
(2002)
Methods for Microarray Data Analysis II
, pp. 91-103
-
-
Mateos, A.1
Herrero, J.2
Tamames, J.3
Dopazo, J.4
-
18
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
-
Pellegrini, M., Marcotte, E.M., Thompson, M.J., Eisenberg, D., and Yeates, T.O. 1999. Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles. Proc. Natl. Acad. Sci. 96: 4285-4288.
-
(1999)
Proc. Natl. Acad. Sci.
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
19
-
-
0035166979
-
The comprehensive microbial resource
-
Peterson, J.D., Umayam, L.A., Dickinson, T.M., Hickey, E.K., and White, O. 2001. The comprehensive microbial resource. Nucleic Acids Res. 29: 123-125.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 123-125
-
-
Peterson, J.D.1
Umayam, L.A.2
Dickinson, T.M.3
Hickey, E.K.4
White, O.5
-
20
-
-
0029795692
-
Competence for genetic transformation in encapsulated strains of Streptococcus pneumoniae: Two allelic variants of the peptide pheromone
-
Pozzi, G., Masala, L., Iannelli, F., Manganelli, R., Havarstein, L.S., Piccoli, L., Simon, D., and Morrison, D.A. 1996. Competence for genetic transformation in encapsulated strains of Streptococcus pneumoniae: Two allelic variants of the peptide pheromone. J. Bacteriol. 178: 6087-6090.
-
(1996)
J. Bacteriol.
, vol.178
, pp. 6087-6090
-
-
Pozzi, G.1
Masala, L.2
Iannelli, F.3
Manganelli, R.4
Havarstein, L.S.5
Piccoli, L.6
Simon, D.7
Morrison, D.A.8
-
21
-
-
0034618559
-
Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS
-
Shigenobu, S., Watanabe, H., Hattori, M., Sakaki, Y., and Ishikawa, H. 2000. Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. Nature 407: 81-86.
-
(2000)
Nature
, vol.407
, pp. 81-86
-
-
Shigenobu, S.1
Watanabe, H.2
Hattori, M.3
Sakaki, Y.4
Ishikawa, H.5
-
22
-
-
0032778047
-
The genomic tree as revealed from whole proteome comparisons
-
Tekaia, F., Lazcano, A., and Dujon, B. 1999. The genomic tree as revealed from whole proteome comparisons. Genome Res. 9: 550-S57.
-
(1999)
Genome Res.
, vol.9
, pp. 550-557
-
-
Tekaia, F.1
Lazcano, A.2
Dujon, B.3
-
23
-
-
0010414313
-
Evolution of gene order conservation in prokaryotes
-
Tamames, J. 2001. Evolution of gene order conservation in prokaryotes Genome Biology 2: 0020.1-0020.11.
-
(2001)
Genome Biology
, vol.2
-
-
Tamames, J.1
-
24
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov, R.L., Koonin, E.V., and Lipman, D.J. 1997. A genomic perspective on protein families. Science 278: 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
25
-
-
0001895697
-
Evolutionary divergence and convergence in proteins
-
(eds. V. Bryson and H.J. Vogel), Academic Press, New York, NY
-
Zuckerlandl, E. and Pauling, L. 1965. Evolutionary divergence and convergence in proteins. In Evolving genes and proteins (eds. V. Bryson and H.J. Vogel), pp. 97-166. Academic Press, New York, NY.
-
(1965)
Evolving Genes and Proteins
, pp. 97-166
-
-
Zuckerlandl, E.1
Pauling, L.2
|