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Volumn 13, Issue 5, 2003, Pages 991-998

Comparing bacterial genomes through conservation profiles

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; CONTROLLED STUDY; ESCHERICHIA COLI; GENE FUNCTION; GENETIC CONSERVATION; GENETIC TRAIT; GENOME ANALYSIS; GENOTYPE; GENOTYPE PHENOTYPE CORRELATION; MULTIGENE FAMILY; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL;

EID: 0038104835     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.678303     Document Type: Article
Times cited : (22)

References (25)
  • 1
    • 0028072561 scopus 로고
    • The dipeptide permease of Escherichia coli closely resembles other bacterial transport systems and shows growth-phase-dependent expression
    • Abouhamad, W.N. and Manson, M.D. 1994. The dipeptide permease of Escherichia coli closely resembles other bacterial transport systems and shows growth-phase-dependent expression. Mol. Microbial. 14: 1077-1092.
    • (1994) Mol. Microbial. , vol.14 , pp. 1077-1092
    • Abouhamad, W.N.1    Manson, M.D.2
  • 5
    • 0031042985 scopus 로고    scopus 로고
    • Phylogenetic reconstruction using a growing neural network that adopts the topology of a phylogenetic tree
    • Dopazo, J. and Carazo, J.M. 1997. Phylogenetic reconstruction using a growing neural network that adopts the topology of a phylogenetic tree. J. Mol. Evol. 44: 226-233.
    • (1997) J. Mol. Evol. , vol.44 , pp. 226-233
    • Dopazo, J.1    Carazo, J.M.2
  • 7
    • 0022203256 scopus 로고
    • Phylogenetics and the comparative method
    • Felsenstein, J. 1985. Phylogenetics and the comparative method. Am. Naturalist 125: 1-15.
    • (1985) Am. Naturalist , vol.125 , pp. 1-15
    • Felsenstein, J.1
  • 8
    • 0033231209 scopus 로고    scopus 로고
    • Whole genome-based phylogenetic analysis of free-living microorganisms
    • Fitz-Gibbon, S.T. and House, C.H. 1999. Whole genome-based phylogenetic analysis of free-living microorganisms. Nucleic Acids Res. 27: 4218-4222.
    • (1999) Nucleic Acids Res. , vol.27 , pp. 4218-4222
    • Fitz-Gibbon, S.T.1    House, C.H.2
  • 9
    • 0028748949 scopus 로고
    • Growing cell structures - A self-organizing network for unsupervised and supervised learning
    • Fritzke, B. 1994. Growing cell structures - A self-organizing network for unsupervised and supervised learning. Neural Networks 7: 1141-1160.
    • (1994) Neural Networks , vol.7 , pp. 1141-1160
    • Fritzke, B.1
  • 10
    • 0031610846 scopus 로고    scopus 로고
    • Constructing multigenome views of whole microbial genomes
    • Gaasterland, T. and Regan, M.A. 1998. Constructing multigenome views of whole microbial genomes. Microb. Comp. Genomics 3: 177-192.
    • (1998) Microb. Comp. Genomics , vol.3 , pp. 177-192
    • Gaasterland, T.1    Regan, M.A.2
  • 11
    • 0035108235 scopus 로고    scopus 로고
    • A hierarchical unsupervised growing neural network for clustering gene expression patterns
    • Herrero, J., Valencia, A., and Dopazo, J. 2001. A hierarchical unsupervised growing neural network for clustering gene expression patterns. Bioinformatics 17: 126-136.
    • (2001) Bioinformatics , vol.17 , pp. 126-136
    • Herrero, J.1    Valencia, A.2    Dopazo, J.3
  • 12
  • 14
    • 0003410791 scopus 로고    scopus 로고
    • Self-organizing maps
    • Springer-Verlag, Berlin, Germany
    • Kohonen, T. 1997. Self-organizing maps. Springer-Verlag, Berlin, Germany.
    • (1997)
    • Kohonen, T.1
  • 15
    • 0032855518 scopus 로고    scopus 로고
    • Gene transfer, speciation, and the evolution of bacterial genomes
    • Lawrence, J.G. 1999. Gene transfer, speciation, and the evolution of bacterial genomes. Curr. Opin. Microbiol. 2: 519-523.
    • (1999) Curr. Opin. Microbiol. , vol.2 , pp. 519-523
    • Lawrence, J.G.1
  • 16
    • 0033918311 scopus 로고    scopus 로고
    • Whole-genome trees based on the occurrence of folds and orthologs: Implications for comparing genomes on different levels
    • Lin, J. and Gerstein, M. 2000. Whole-genome trees based on the occurrence of folds and orthologs: Implications for comparing genomes on different levels. Genome Res. 10: 808-818.
    • (2000) Genome Res. , vol.10 , pp. 808-818
    • Lin, J.1    Gerstein, M.2
  • 17
    • 0038561723 scopus 로고    scopus 로고
    • Supervised neural networks for clustering conditions in DNA array data after reducing noise by clustering gene expression profiles
    • (eds. S. Lin and K. Jonson), Kluwer Academic Publishers, Boston, MA
    • Mateos, A., Herrero, J., Tamames, J., and Dopazo, J. 2002. Supervised neural networks for clustering conditions in DNA array data after reducing noise by clustering gene expression profiles. In Methods for Microarray Data Analysis II (eds. S. Lin and K. Jonson), pp. 91-103. Kluwer Academic Publishers, Boston, MA.
    • (2002) Methods for Microarray Data Analysis II , pp. 91-103
    • Mateos, A.1    Herrero, J.2    Tamames, J.3    Dopazo, J.4
  • 20
    • 0029795692 scopus 로고    scopus 로고
    • Competence for genetic transformation in encapsulated strains of Streptococcus pneumoniae: Two allelic variants of the peptide pheromone
    • Pozzi, G., Masala, L., Iannelli, F., Manganelli, R., Havarstein, L.S., Piccoli, L., Simon, D., and Morrison, D.A. 1996. Competence for genetic transformation in encapsulated strains of Streptococcus pneumoniae: Two allelic variants of the peptide pheromone. J. Bacteriol. 178: 6087-6090.
    • (1996) J. Bacteriol. , vol.178 , pp. 6087-6090
    • Pozzi, G.1    Masala, L.2    Iannelli, F.3    Manganelli, R.4    Havarstein, L.S.5    Piccoli, L.6    Simon, D.7    Morrison, D.A.8
  • 21
    • 0034618559 scopus 로고    scopus 로고
    • Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS
    • Shigenobu, S., Watanabe, H., Hattori, M., Sakaki, Y., and Ishikawa, H. 2000. Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS. Nature 407: 81-86.
    • (2000) Nature , vol.407 , pp. 81-86
    • Shigenobu, S.1    Watanabe, H.2    Hattori, M.3    Sakaki, Y.4    Ishikawa, H.5
  • 22
    • 0032778047 scopus 로고    scopus 로고
    • The genomic tree as revealed from whole proteome comparisons
    • Tekaia, F., Lazcano, A., and Dujon, B. 1999. The genomic tree as revealed from whole proteome comparisons. Genome Res. 9: 550-S57.
    • (1999) Genome Res. , vol.9 , pp. 550-557
    • Tekaia, F.1    Lazcano, A.2    Dujon, B.3
  • 23
    • 0010414313 scopus 로고    scopus 로고
    • Evolution of gene order conservation in prokaryotes
    • Tamames, J. 2001. Evolution of gene order conservation in prokaryotes Genome Biology 2: 0020.1-0020.11.
    • (2001) Genome Biology , vol.2
    • Tamames, J.1
  • 24
    • 0030660581 scopus 로고    scopus 로고
    • A genomic perspective on protein families
    • Tatusov, R.L., Koonin, E.V., and Lipman, D.J. 1997. A genomic perspective on protein families. Science 278: 631-637.
    • (1997) Science , vol.278 , pp. 631-637
    • Tatusov, R.L.1    Koonin, E.V.2    Lipman, D.J.3
  • 25
    • 0001895697 scopus 로고
    • Evolutionary divergence and convergence in proteins
    • (eds. V. Bryson and H.J. Vogel), Academic Press, New York, NY
    • Zuckerlandl, E. and Pauling, L. 1965. Evolutionary divergence and convergence in proteins. In Evolving genes and proteins (eds. V. Bryson and H.J. Vogel), pp. 97-166. Academic Press, New York, NY.
    • (1965) Evolving Genes and Proteins , pp. 97-166
    • Zuckerlandl, E.1    Pauling, L.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.