-
1
-
-
24944506412
-
A survey on bacteria inhabiting the sea surface microlayer of coastal ecosystems
-
Agogué H., Casamayor E.O., Bourrain M., Obernosterer I., Joux F., Herndl G.J., and Lebaron P. A survey on bacteria inhabiting the sea surface microlayer of coastal ecosystems. FEMS Microbiol. Ecol. 54 (2005) 269-280
-
(2005)
FEMS Microbiol. Ecol.
, vol.54
, pp. 269-280
-
-
Agogué, H.1
Casamayor, E.O.2
Bourrain, M.3
Obernosterer, I.4
Joux, F.5
Herndl, G.J.6
Lebaron, P.7
-
3
-
-
33947245554
-
Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH
-
Alonso-Sáez L., Balagué V., Sà E.L., Sánchez O., González J.M., Pinhassi J., Massana R., Pernthaler J., Pedrós-Alió C., and Gasol J.M. Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and FISH. FEMS Microbiol. Ecol. 60 (2007) 98-112
-
(2007)
FEMS Microbiol. Ecol.
, vol.60
, pp. 98-112
-
-
Alonso-Sáez, L.1
Balagué, V.2
Sà, E.L.3
Sánchez, O.4
González, J.M.5
Pinhassi, J.6
Massana, R.7
Pernthaler, J.8
Pedrós-Alió, C.9
Gasol, J.M.10
-
4
-
-
33748317969
-
Molecular phylogenetic and chemical analyses of the microbial mats in deep-sea cold seep sediments at the northeastern Japan Sea
-
Arakawa S., Sato T., Sato R., Zhang J., Gamo T., Tsunogai U., Hirota A., Yoshida Y., Usami R., Inagaki F., and Kato C. Molecular phylogenetic and chemical analyses of the microbial mats in deep-sea cold seep sediments at the northeastern Japan Sea. Extremophiles 10 (2006) 311-319
-
(2006)
Extremophiles
, vol.10
, pp. 311-319
-
-
Arakawa, S.1
Sato, T.2
Sato, R.3
Zhang, J.4
Gamo, T.5
Tsunogai, U.6
Hirota, A.7
Yoshida, Y.8
Usami, R.9
Inagaki, F.10
Kato, C.11
-
5
-
-
29144504177
-
At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
-
Ashelford K.E., Chuzhanova N.A., Fry J.C., Jones A.J., and Weightman A.J. At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Appl. Environ. Microbiol. 71 (2005) 7724-7736
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 7724-7736
-
-
Ashelford, K.E.1
Chuzhanova, N.A.2
Fry, J.C.3
Jones, A.J.4
Weightman, A.J.5
-
7
-
-
0038221079
-
Are readily culturable bacteria in coastal North Sea waters suppressed by selective grazing mortality?
-
Beardsley C., Pernthaler J., Wosniok W., and Amann R. Are readily culturable bacteria in coastal North Sea waters suppressed by selective grazing mortality?. Appl. Environ. Microbiol. 69 (2003) 2624-2630
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2624-2630
-
-
Beardsley, C.1
Pernthaler, J.2
Wosniok, W.3
Amann, R.4
-
8
-
-
0037033979
-
Unsuspected diversity among marine aerobic anoxygenic phototrophs
-
Béjà O., Suzuki M.T., Heidelberg J.F., Nelson W.C., Preston C.M., Hamada T., Eisen J.A., Fraser C.M., and DeLong E.F. Unsuspected diversity among marine aerobic anoxygenic phototrophs. Nature 415 (2002) 630-633
-
(2002)
Nature
, vol.415
, pp. 630-633
-
-
Béjà, O.1
Suzuki, M.T.2
Heidelberg, J.F.3
Nelson, W.C.4
Preston, C.M.5
Hamada, T.6
Eisen, J.A.7
Fraser, C.M.8
DeLong, E.F.9
-
9
-
-
0038369933
-
Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment
-
Bowman J.P., and McCuaig R.D. Biodiversity, community structural shifts, and biogeography of prokaryotes within Antarctic continental shelf sediment. Appl. Environ. Microbiol. 69 (2003) 2463-2483
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2463-2483
-
-
Bowman, J.P.1
McCuaig, R.D.2
-
10
-
-
0242657566
-
Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice
-
Brinkmeyer R., Knittel K., Jurgens J., Weyland H., Amann R., and Helmke E. Diversity and structure of bacterial communities in Arctic versus Antarctic pack ice. Appl. Environ. Microbiol. 69 (2003) 6610-6619
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 6610-6619
-
-
Brinkmeyer, R.1
Knittel, K.2
Jurgens, J.3
Weyland, H.4
Amann, R.5
Helmke, E.6
-
11
-
-
0347130086
-
Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria
-
Cho J.C., and Giovannoni S.J. Cultivation and growth characteristics of a diverse group of oligotrophic marine Gammaproteobacteria. Appl. Environ. Microbiol. 70 (2004) 432-440
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 432-440
-
-
Cho, J.C.1
Giovannoni, S.J.2
-
12
-
-
34248585960
-
Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria
-
Cho J.C., Stapels M.D., Morris R.M., Vergin K.L., Schwalbach M.S., Givan S.A., Barofsky D.F., and Giovannoni S.J. Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria. Environ. Microbiol. 9 (2007) 1456-1463
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 1456-1463
-
-
Cho, J.C.1
Stapels, M.D.2
Morris, R.M.3
Vergin, K.L.4
Schwalbach, M.S.5
Givan, S.A.6
Barofsky, D.F.7
Giovannoni, S.J.8
-
13
-
-
0037251969
-
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
-
Cole J.R., Chai B., Marsh T.L., Farris R.J., Wang Q., Kulam S.A., Chandra S., McGarrell D.M., Schmidt T.M., Garrity G.M., and Tiedje J.M. The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res. 31 (2003) 442-443
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 442-443
-
-
Cole, J.R.1
Chai, B.2
Marsh, T.L.3
Farris, R.J.4
Wang, Q.5
Kulam, S.A.6
Chandra, S.7
McGarrell, D.M.8
Schmidt, T.M.9
Garrity, G.M.10
Tiedje, J.M.11
-
14
-
-
0036324056
-
High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates
-
Connon S.A., and Giovannoni S.J. High-throughput methods for culturing microorganisms in very-low-nutrient media yield diverse new marine isolates. Appl. Environ. Microbiol. 68 (2002) 3878-3885
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3878-3885
-
-
Connon, S.A.1
Giovannoni, S.J.2
-
15
-
-
33644853451
-
Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre
-
Cottrell M.T., Mannino A., and Kirchman D.L. Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre. Appl. Environ. Microbiol. 72 (2006) 557-564
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 557-564
-
-
Cottrell, M.T.1
Mannino, A.2
Kirchman, D.L.3
-
16
-
-
0344172842
-
The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set
-
Daims H., Bruhl A., Amann R., Schleifer K.H., and Wagner M. The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22 (1999) 434-444
-
(1999)
Syst. Appl. Microbiol.
, vol.22
, pp. 434-444
-
-
Daims, H.1
Bruhl, A.2
Amann, R.3
Schleifer, K.H.4
Wagner, M.5
-
17
-
-
31544483932
-
Community genomics among stratified microbial assemblages in the ocean's interior
-
DeLong E.F., Preston C.M., Mincer T., Rich V., Hallam S.J., Frigaard N.U., Martinez A., Sullivan M.B., Edwards R., Brito B.R., Chisholm S.W., and Karl D.M. Community genomics among stratified microbial assemblages in the ocean's interior. Science 311 (2006) 496-503
-
(2006)
Science
, vol.311
, pp. 496-503
-
-
DeLong, E.F.1
Preston, C.M.2
Mincer, T.3
Rich, V.4
Hallam, S.J.5
Frigaard, N.U.6
Martinez, A.7
Sullivan, M.B.8
Edwards, R.9
Brito, B.R.10
Chisholm, S.W.11
Karl, D.M.12
-
18
-
-
34748814848
-
Bacterial diversity in the sediments of a temperate artificial lake, Rapel reservoir
-
Dorador C., Castillo G., Witzel K.P., and Vila I. Bacterial diversity in the sediments of a temperate artificial lake, Rapel reservoir. Rev. Chil. Hist. Nat. 80 (2007) 213-224
-
(2007)
Rev. Chil. Hist. Nat.
, vol.80
, pp. 213-224
-
-
Dorador, C.1
Castillo, G.2
Witzel, K.P.3
Vila, I.4
-
19
-
-
0035514014
-
Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton
-
Eilers H., Pernthaler J., Peplies J., Glöckner F.O., Gerdts G., and Amann R. Isolation of novel pelagic bacteria from the German bight and their seasonal contributions to surface picoplankton. Appl. Environ. Microbiol. 67 (2001) 5134-5142
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5134-5142
-
-
Eilers, H.1
Pernthaler, J.2
Peplies, J.3
Glöckner, F.O.4
Gerdts, G.5
Amann, R.6
-
20
-
-
0036253488
-
Partitioning of bacterial communities between seawater and healthy black band diseased, and dead coral surfaces
-
Frias-Lopez J., Zerkle A.L., Bonheyo G.T., and Fouke B.W. Partitioning of bacterial communities between seawater and healthy black band diseased, and dead coral surfaces. Appl. Environ. Microbiol. 68 (2002) 2214-2228
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 2214-2228
-
-
Frias-Lopez, J.1
Zerkle, A.L.2
Bonheyo, G.T.3
Fouke, B.W.4
-
21
-
-
0033855457
-
Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes
-
Fuchs B.M., Glöckner F.O., Wulf J., and Amann R. Unlabeled helper oligonucleotides increase the in situ accessibility to 16S rRNA of fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 66 (2000) 3603-3607
-
(2000)
Appl. Environ. Microbiol.
, vol.66
, pp. 3603-3607
-
-
Fuchs, B.M.1
Glöckner, F.O.2
Wulf, J.3
Amann, R.4
-
22
-
-
33847309534
-
Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis
-
Fuchs B.M., Spring S., Teeling H., Quast C., Wulf J., Schattenhofer M., Yan S., Ferriera S., Johnson J., Glöckner F.O., and Amann R. Characterization of a marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis. Proc. Natl. Acad. Sci. USA 104 (2007) 2891-2896
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 2891-2896
-
-
Fuchs, B.M.1
Spring, S.2
Teeling, H.3
Quast, C.4
Wulf, J.5
Schattenhofer, M.6
Yan, S.7
Ferriera, S.8
Johnson, J.9
Glöckner, F.O.10
Amann, R.11
-
23
-
-
0031789907
-
Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
-
Fuchs B.M., Wallner G., Beisker W., Schwippl I., Ludwig W., and Amann R. Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 64 (1998) 4973-4982
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 4973-4982
-
-
Fuchs, B.M.1
Wallner, G.2
Beisker, W.3
Schwippl, I.4
Ludwig, W.5
Amann, R.6
-
24
-
-
33645454951
-
Planktonic microbial community composition across steep physical/chemical gradients in permanently ice-covered Lake Bonney, Antarctica
-
Glatz R.E., Lepp P.W., Ward B.B., and Francis C.A. Planktonic microbial community composition across steep physical/chemical gradients in permanently ice-covered Lake Bonney, Antarctica. Geobiology 4 (2006) 53-67
-
(2006)
Geobiology
, vol.4
, pp. 53-67
-
-
Glatz, R.E.1
Lepp, P.W.2
Ward, B.B.3
Francis, C.A.4
-
25
-
-
33845521652
-
Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices
-
Hartmann M., and Widmer F. Community structure analyses are more sensitive to differences in soil bacterial communities than anonymous diversity indices. Appl. Environ. Microbiol. 72 (2006) 7804-7812
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 7804-7812
-
-
Hartmann, M.1
Widmer, F.2
-
27
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck J.P., and Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
28
-
-
2142857748
-
Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk
-
Inagaki F., Suzuki M., Takai K., Oida H., Sakamoto T., Aoki K., Nealson K.H., and Horikoshi K. Microbial communities associated with geological horizons in coastal subseafloor sediments from the Sea of Okhotsk. Appl. Environ. Microbiol. 69 (2003) 7224-7235
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7224-7235
-
-
Inagaki, F.1
Suzuki, M.2
Takai, K.3
Oida, H.4
Sakamoto, T.5
Aoki, K.6
Nealson, K.H.7
Horikoshi, K.8
-
29
-
-
33745767136
-
Time series observation based InfraRed Epifluorescence Microscopic (TIREM) approach for accurate enumeration of bacteriochlorophyll-containing microbes in marine environments
-
Jiao N.Z., Zhang Y., and Chen Y. Time series observation based InfraRed Epifluorescence Microscopic (TIREM) approach for accurate enumeration of bacteriochlorophyll-containing microbes in marine environments. J. Microbiol. Methods 65 (2006) 442-452
-
(2006)
J. Microbiol. Methods
, vol.65
, pp. 442-452
-
-
Jiao, N.Z.1
Zhang, Y.2
Chen, Y.3
-
30
-
-
35948971425
-
Distinct distribution pattern of abundance and diversity of aerobic anoxygenic phototrophic bacteria in the global ocean
-
Jiao N.Z., Zhang Y., Zeng Y.H., Hong N., Liu R.L., Chen F., and Wang P.X. Distinct distribution pattern of abundance and diversity of aerobic anoxygenic phototrophic bacteria in the global ocean. Environ. Microbiol. 9 (2007) 3091-3099
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 3091-3099
-
-
Jiao, N.Z.1
Zhang, Y.2
Zeng, Y.H.3
Hong, N.4
Liu, R.L.5
Chen, F.6
Wang, P.X.7
-
32
-
-
34447338390
-
Populations related to Alkanindiges, a novel genus containing obligate alkane degraders, are implicated in biological foaming in activated sludge systems
-
Klein A.N., Frigon D., and Raskin L. Populations related to Alkanindiges, a novel genus containing obligate alkane degraders, are implicated in biological foaming in activated sludge systems. Environ. Microbiol. 9 (2007) 1898-1912
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 1898-1912
-
-
Klein, A.N.1
Frigon, D.2
Raskin, L.3
-
33
-
-
0035967937
-
Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean
-
Kolber Z.S., Plumley F.G., Lang A.S., Beatty J.T., Blankenship R.E., van Dover C.L., Vetriani C., Koblizek M., Rathgeber C., and Falkowski P.G. Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science 292 (2001) 2492-2495
-
(2001)
Science
, vol.292
, pp. 2492-2495
-
-
Kolber, Z.S.1
Plumley, F.G.2
Lang, A.S.3
Beatty, J.T.4
Blankenship, R.E.5
van Dover, C.L.6
Vetriani, C.7
Koblizek, M.8
Rathgeber, C.9
Falkowski, P.G.10
-
35
-
-
33747354385
-
Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter
-
Koren O., and Rosenberg E. Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter. Appl. Environ. Microbiol. 72 (2006) 5254-5259
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 5254-5259
-
-
Koren, O.1
Rosenberg, E.2
-
36
-
-
33646584137
-
Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat
-
Ley R.E., Harris J.K., Wilcox J., Spear J.R., Miller S.R., Bebout B.M., Maresca J.A., Bryant D.A., Sogin M.L., and Pace N.R. Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Appl. Environ. Microbiol. 72 (2006) 3685-3695
-
(2006)
Appl. Environ. Microbiol.
, vol.72
, pp. 3685-3695
-
-
Ley, R.E.1
Harris, J.K.2
Wilcox, J.3
Spear, J.R.4
Miller, S.R.5
Bebout, B.M.6
Maresca, J.A.7
Bryant, D.A.8
Sogin, M.L.9
Pace, N.R.10
-
37
-
-
0032990367
-
Bacterial diversity in deep-sea sediments from different depths
-
Li L.N., Kato C., and Horikoshi K. Bacterial diversity in deep-sea sediments from different depths. Biodivers. Conserv. 8 (1999) 659-677
-
(1999)
Biodivers. Conserv.
, vol.8
, pp. 659-677
-
-
Li, L.N.1
Kato, C.2
Horikoshi, K.3
-
38
-
-
33846512283
-
Recovery of novel bacterial diversity from mangrove sediment
-
Liang J.B., Chen Y.Q., Lan C.Y., Tam N.F.Y., Zan Q.J., and Huang L.N. Recovery of novel bacterial diversity from mangrove sediment. Mar. Biol. 150 (2007) 739-747
-
(2007)
Mar. Biol.
, vol.150
, pp. 739-747
-
-
Liang, J.B.1
Chen, Y.Q.2
Lan, C.Y.3
Tam, N.F.Y.4
Zan, Q.J.5
Huang, L.N.6
-
39
-
-
35148830739
-
Microbial community composition of the Danshui river estuary of northern Taiwan and the practicality of the phylogenetic method in microbial barcoding
-
Liao P.C., Huang B.H., and Huang S. Microbial community composition of the Danshui river estuary of northern Taiwan and the practicality of the phylogenetic method in microbial barcoding. Microb. Ecol. 54 (2007) 497-507
-
(2007)
Microb. Ecol.
, vol.54
, pp. 497-507
-
-
Liao, P.C.1
Huang, B.H.2
Huang, S.3
-
40
-
-
0038185214
-
A census of rRNA genes and linked genomic sequences within a soil metagenomic library
-
Liles M.R., Manske B.F., Bintrim S.B., Handelsman J., and Goodman R.M. A census of rRNA genes and linked genomic sequences within a soil metagenomic library. Appl. Environ. Microbiol. 69 (2003) 2684-2691
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2684-2691
-
-
Liles, M.R.1
Manske, B.F.2
Bintrim, S.B.3
Handelsman, J.4
Goodman, R.M.5
-
41
-
-
0344765523
-
Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization
-
Llobet-Brossa E., Rosselló-Mora R., and Amann R. Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization. Appl. Environ. Microbiol. 64 (1998) 2691-2696
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 2691-2696
-
-
Llobet-Brossa, E.1
Rosselló-Mora, R.2
Amann, R.3
-
42
-
-
0031895203
-
Bacterial phylogeny based on comparative sequence analysis
-
Ludwig W., Strunk O., Klugbauer S., Klugbauer N., Weizenegger M., Neumaier J., Bachleitner M., and Schleifer K.H. Bacterial phylogeny based on comparative sequence analysis. Electrophoresis 19 (1998) 554-568
-
(1998)
Electrophoresis
, vol.19
, pp. 554-568
-
-
Ludwig, W.1
Strunk, O.2
Klugbauer, S.3
Klugbauer, N.4
Weizenegger, M.5
Neumaier, J.6
Bachleitner, M.7
Schleifer, K.H.8
-
43
-
-
2542523843
-
ARB: a software environment for sequence data
-
Ludwig W., Strunk O., Westram R., Richter L., Meier H., Yadhukumar, Buchner A., Lai T., Steppi S., Jobb G., Forster W., Brettske I., Gerber S., Ginhart A.W., Gross O., Grumann S., Hermann S., Jost R., Konig A., Liss T., Lussmann R., May M., Nonhoff B., Reichel B., Strehlow R., Stamatakis A., Stuckmann N., Vilbig A., Lenke M., Ludwig T., Bode A., and Schleifer K.H. ARB: a software environment for sequence data. Nucleic Acids Res. 32 (2004) 1363-1371
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jobb, G.10
Forster, W.11
Brettske, I.12
Gerber, S.13
Ginhart, A.W.14
Gross, O.15
Grumann, S.16
Hermann, S.17
Jost, R.18
Konig, A.19
Liss, T.20
Lussmann, R.21
May, M.22
Nonhoff, B.23
Reichel, B.24
Strehlow, R.25
Stamatakis, A.26
Stuckmann, N.27
Vilbig, A.28
Lenke, M.29
Ludwig, T.30
Bode, A.31
Schleifer, K.H.32
more..
-
44
-
-
0035795211
-
Distribution and abundance of Gram-positive bacteria in the environment: development of a group-specific probe
-
MacGregor B.J., Toze S., Alm E.W., Sharp R., Ziemer C.J., and Stahl D.A. Distribution and abundance of Gram-positive bacteria in the environment: development of a group-specific probe. J. Microbiol. Methods 44 (2001) 193-203
-
(2001)
J. Microbiol. Methods
, vol.44
, pp. 193-203
-
-
MacGregor, B.J.1
Toze, S.2
Alm, E.W.3
Sharp, R.4
Ziemer, C.J.5
Stahl, D.A.6
-
45
-
-
33847346802
-
Characteristics of nonylphenol polyethoxylate-degrading bacteria isolated from coastal sediments
-
Maeda T., Hayakawa K., You M., Sasaki M., Yamaji Y., Furushita M., and Shiba T. Characteristics of nonylphenol polyethoxylate-degrading bacteria isolated from coastal sediments. Microbes Environ. 20 (2005) 253-257
-
(2005)
Microbes Environ.
, vol.20
, pp. 253-257
-
-
Maeda, T.1
Hayakawa, K.2
You, M.3
Sasaki, M.4
Yamaji, Y.5
Furushita, M.6
Shiba, T.7
-
46
-
-
0027068041
-
Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria-problems and solutions
-
Manz W., Amann R., Ludwig W., Wagner M., and Schleifer K.H. Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria-problems and solutions. Syst. Appl. Microbiol. 15 (1992) 593-600
-
(1992)
Syst. Appl. Microbiol.
, vol.15
, pp. 593-600
-
-
Manz, W.1
Amann, R.2
Ludwig, W.3
Wagner, M.4
Schleifer, K.H.5
-
47
-
-
0028976712
-
Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities
-
Mullins T.D., Britschgi T.B., Krest R.L., and Giovannoni S.J. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanogr. 40 (1995) 148-158
-
(1995)
Limnol. Oceanogr.
, vol.40
, pp. 148-158
-
-
Mullins, T.D.1
Britschgi, T.B.2
Krest, R.L.3
Giovannoni, S.J.4
-
48
-
-
23744477855
-
Diurnal variation of cell proliferation in three bacterial taxa from coastal North Sea waters
-
Pernthaler A., and Pernthaler J. Diurnal variation of cell proliferation in three bacterial taxa from coastal North Sea waters. Appl. Environ. Microbiol. 71 (2005) 4638-4644
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 4638-4644
-
-
Pernthaler, A.1
Pernthaler, J.2
-
49
-
-
0036276618
-
Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
-
Pernthaler A., Pernthaler J., and Amann R. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 68 (2002) 3094-3101
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3094-3101
-
-
Pernthaler, A.1
Pernthaler, J.2
Amann, R.3
-
50
-
-
37549027613
-
-
E. Pruesse, C. Quast, K. Knittel, B.M. Fuchs, W. Ludwig, J. Peplies, F.O. Glöckner, SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB, Nucleic Acids Res. (2007).
-
(2007)
SILVA: A comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB, Nucleic Acids Res
-
-
Pruesse, E.1
Quast, C.2
Knittel, K.3
Fuchs, B.M.4
Ludwig, W.5
Peplies, J.6
Glöckner, F.O.7
-
51
-
-
0031395502
-
Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina
-
Rappé M.S., Kemp P.F., and Giovannoni S.J. Phylogenetic diversity of marine coastal picoplankton 16S rRNA genes cloned from the continental shelf off Cape Hatteras, North Carolina. Limnol. Oceanogr. 42 (1997) 811-826
-
(1997)
Limnol. Oceanogr.
, vol.42
, pp. 811-826
-
-
Rappé, M.S.1
Kemp, P.F.2
Giovannoni, S.J.3
-
52
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern Tropical Pacific
-
Rusch D.B., Halpern A.L., Sutton G., Heidelberg K.B., Williamson S., Yooseph S., Wu D.Y., Eisen J.A., Hoffman J.M., Remington K., Beeson K., Tran B., Smith H., Baden-Tillson H., Stewart C., Thorpe J., Freeman J., Andrews-Pfannkoch C., Venter J.E., Li K., Kravitz S., Heidelberg J.F., Utterback T., Rogers Y.H., Falcon L.I., Souza V., Bonilla-Rosso G., Eguiarte L.E., Karl D.M., Sathyendranath S., Platt T., Bermingham E., Gallardo V., Tamayo-Castillo G., Ferrari M.R., Strausberg R.L., Nealson K., Friedman R., Frazier M., and Venter J.C. The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol. 5 (2007) 398-431
-
(2007)
PLoS Biol.
, vol.5
, pp. 398-431
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
Heidelberg, K.B.4
Williamson, S.5
Yooseph, S.6
Wu, D.Y.7
Eisen, J.A.8
Hoffman, J.M.9
Remington, K.10
Beeson, K.11
Tran, B.12
Smith, H.13
Baden-Tillson, H.14
Stewart, C.15
Thorpe, J.16
Freeman, J.17
Andrews-Pfannkoch, C.18
Venter, J.E.19
Li, K.20
Kravitz, S.21
Heidelberg, J.F.22
Utterback, T.23
Rogers, Y.H.24
Falcon, L.I.25
Souza, V.26
Bonilla-Rosso, G.27
Eguiarte, L.E.28
Karl, D.M.29
Sathyendranath, S.30
Platt, T.31
Bermingham, E.32
Gallardo, V.33
Tamayo-Castillo, G.34
Ferrari, M.R.35
Strausberg, R.L.36
Nealson, K.37
Friedman, R.38
Frazier, M.39
Venter, J.C.40
more..
-
53
-
-
15944387774
-
Wide-ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR
-
Schwalbach M.S., and Fuhrman J.A. Wide-ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR. Limnol. Oceanogr. 50 (2005) 620-628
-
(2005)
Limnol. Oceanogr.
, vol.50
, pp. 620-628
-
-
Schwalbach, M.S.1
Fuhrman, J.A.2
-
54
-
-
0036795083
-
Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis
-
Sekiguchi H., Watanabe M., Nakahara T., Xu B.H., and Uchiyama H. Succession of bacterial community structure along the Changjiang River determined by denaturing gradient gel electrophoresis and clone library analysis. Appl. Environ. Microbiol. 68 (2002) 5142-5150
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 5142-5150
-
-
Sekiguchi, H.1
Watanabe, M.2
Nakahara, T.3
Xu, B.H.4
Uchiyama, H.5
-
55
-
-
0842285837
-
A newly discovered Roseobacter cluster in temperate and polar oceans
-
Selje N., Simon M., and Brinkhoff T. A newly discovered Roseobacter cluster in temperate and polar oceans. Nature 427 (2004) 445-448
-
(2004)
Nature
, vol.427
, pp. 445-448
-
-
Selje, N.1
Simon, M.2
Brinkhoff, T.3
-
56
-
-
32944478585
-
Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic
-
Sieracki M.E., Gilg I.C., Thier E.C., Poulton N.J., and Goericke R. Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic. Limnol. Oceanogr. 51 (2006) 38-46
-
(2006)
Limnol. Oceanogr.
, vol.51
, pp. 38-46
-
-
Sieracki, M.E.1
Gilg, I.C.2
Thier, E.C.3
Poulton, N.J.4
Goericke, R.5
-
57
-
-
1642283655
-
Assessment of equine fecal contamination: the search for alternative bacterial source-tracking targets
-
Simpson J.M., Domingo J.W.S., and Reasoner D.J. Assessment of equine fecal contamination: the search for alternative bacterial source-tracking targets. FEMS Microbiol. Ecol. 47 (2004) 65-75
-
(2004)
FEMS Microbiol. Ecol.
, vol.47
, pp. 65-75
-
-
Simpson, J.M.1
Domingo, J.W.S.2
Reasoner, D.J.3
-
58
-
-
12244263975
-
Phylogenetic screening of ribosomal RNA gene-containing clones in bacterial artificial chromosome (BAC) libraries from different depths in Monterey Bay
-
Suzuki M.T., Preston C.M., Béjà O., de la Torre J.R., Steward G.F., and DeLong E.F. Phylogenetic screening of ribosomal RNA gene-containing clones in bacterial artificial chromosome (BAC) libraries from different depths in Monterey Bay. Microb. Ecol. 48 (2004) 473-488
-
(2004)
Microb. Ecol.
, vol.48
, pp. 473-488
-
-
Suzuki, M.T.1
Preston, C.M.2
Béjà, O.3
de la Torre, J.R.4
Steward, G.F.5
DeLong, E.F.6
-
59
-
-
34248387298
-
Analysis of 16S rRNA gene sequences and circulating cell-free DNA from plasma of chronic fatigue syndrome and non-fatigued subjects
-
Vernon S.D., Shukla S.K., Conradt J., Unger E.R., and Reeves W.C. Analysis of 16S rRNA gene sequences and circulating cell-free DNA from plasma of chronic fatigue syndrome and non-fatigued subjects. BMC Microbiol. 2 (2002)
-
(2002)
BMC Microbiol.
, vol.2
-
-
Vernon, S.D.1
Shukla, S.K.2
Conradt, J.3
Unger, E.R.4
Reeves, W.C.5
-
60
-
-
0027339723
-
Optimizing fluorescent in situ hybridization with ribosomal-RNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms
-
Wallner G., Amann R., and Beisker W. Optimizing fluorescent in situ hybridization with ribosomal-RNA-targeted oligonucleotide probes for flow cytometric identification of microorganisms. Cytometry 14 (1993) 136-143
-
(1993)
Cytometry
, vol.14
, pp. 136-143
-
-
Wallner, G.1
Amann, R.2
Beisker, W.3
-
61
-
-
0344255826
-
Microbial diversity and functional characterization of sediments from reservoirs of different trophic state
-
Wobus A., Bleul C., Maassen S., Scheerer C., Schuppler M., Jacobs E., and Roske I. Microbial diversity and functional characterization of sediments from reservoirs of different trophic state. FEMS Microbiol. Ecol. 46 (2003) 331-347
-
(2003)
FEMS Microbiol. Ecol.
, vol.46
, pp. 331-347
-
-
Wobus, A.1
Bleul, C.2
Maassen, S.3
Scheerer, C.4
Schuppler, M.5
Jacobs, E.6
Roske, I.7
-
62
-
-
34248573531
-
Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes
-
Yutin N., Suzuki M.T., Teeling H., Weber M., Venter J.C., Rusch D.B., and Béjà O. Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes. Environ. Microbiol. 9 (2007) 1464-1475
-
(2007)
Environ. Microbiol.
, vol.9
, pp. 1464-1475
-
-
Yutin, N.1
Suzuki, M.T.2
Teeling, H.3
Weber, M.4
Venter, J.C.5
Rusch, D.B.6
Béjà, O.7
-
63
-
-
0035516025
-
Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea
-
Zubkov M.V., Fuchs B.M., Burkill P.H., and Amann R. Comparison of cellular and biomass specific activities of dominant bacterioplankton groups in stratified waters of the Celtic Sea. Appl. Environ. Microbiol. 67 (2001) 5210-5218
-
(2001)
Appl. Environ. Microbiol.
, vol.67
, pp. 5210-5218
-
-
Zubkov, M.V.1
Fuchs, B.M.2
Burkill, P.H.3
Amann, R.4
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