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Volumn 47, Issue 1, 2004, Pages 65-75

Assessment of equine fecal contamination: The search for alternative bacterial source-tracking targets

Author keywords

16S rDNA; Bacteroides; Horse manure; Source tracking; Watershed

Indexed keywords

BACTERIAL DNA; RIBOSOME DNA;

EID: 1642283655     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(03)00250-2     Document Type: Article
Times cited : (53)

References (40)
  • 2
    • 0032421605 scopus 로고    scopus 로고
    • Distinguishing human from animal faecal contamination in water: A review
    • Sinton L.W., Finlay R.K., Hannah D.J. Distinguishing human from animal faecal contamination in water: a review. N.Z. J. Mar. Freshwater Res. 33:1998;323-348.
    • (1998) N.Z. J. Mar. Freshwater Res. , vol.33 , pp. 323-348
    • Sinton, L.W.1    Finlay, R.K.2    Hannah, D.J.3
  • 3
    • 0034996147 scopus 로고    scopus 로고
    • Geographical structure and host specificity in bacteria and the implications for tracing the source of coliform contamination
    • Gordon D.M. Geographical structure and host specificity in bacteria and the implications for tracing the source of coliform contamination. Microbiology. 147:2001;1079-1085.
    • (2001) Microbiology , vol.147 , pp. 1079-1085
    • Gordon, D.M.1
  • 4
    • 0032747879 scopus 로고    scopus 로고
    • Sorbitol-fermenting Bifidobacteria as indicators of diffuse human faecal pollution in estuarine watersheds
    • Rhodes M.W., Kator H. Sorbitol-fermenting Bifidobacteria as indicators of diffuse human faecal pollution in estuarine watersheds. J. Appl. Microbiol. 87:1999;528-535.
    • (1999) J. Appl. Microbiol. , vol.87 , pp. 528-535
    • Rhodes, M.W.1    Kator, H.2
  • 5
    • 0034894451 scopus 로고    scopus 로고
    • Polymerase chain reaction and denaturing gradient gel electrophoresis monitoring of fecal Bifidobacterium populations in a prebiotic and probiotic feeding trial
    • Satokari R., Vaughan E., Akkermans A., Saarela M., De Vos W. Polymerase chain reaction and denaturing gradient gel electrophoresis monitoring of fecal Bifidobacterium populations in a prebiotic and probiotic feeding trial. Syst. Appl. Microbiol. 24:2001;227-231.
    • (2001) Syst. Appl. Microbiol. , vol.24 , pp. 227-231
    • Satokari, R.1    Vaughan, E.2    Akkermans, A.3    Saarela, M.4    De Vos, W.5
  • 6
    • 0033774937 scopus 로고    scopus 로고
    • A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
    • Bernhard A.E., Field K.G. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl. Environ. Microbiol. 66:2000;4571-5474.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 4571-5474
    • Bernhard, A.E.1    Field, K.G.2
  • 7
    • 0031714984 scopus 로고    scopus 로고
    • Persistence of PCR-detectable Bacteroides distasonis from human feces in river water
    • Kreader C.A. Persistence of PCR-detectable Bacteroides distasonis from human feces in river water. Appl. Environ. Microbiol. 64:1998;4103-4105.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4103-4105
    • Kreader, C.A.1
  • 8
    • 1642275788 scopus 로고    scopus 로고
    • Detection of Bacteroides species by polymerase chain reaction (PCR) for identifying sewage contamination in recreational water
    • Chicago, IL.
    • Rijal, G., Bonilla, A. and Fujioka, R.S. (2002) Detection of Bacteroides species by polymerase chain reaction (PCR) for identifying sewage contamination in recreational water. Presented at the Water Environment Federation 75th Annual Technical Exhibition and Conference, Chicago, IL.
    • (2002) Water Environment Federation 75th Annual Technical Exhibition and Conference
    • Rijal, G.1    Bonilla, A.2    Fujioka, R.S.3
  • 9
    • 0035956608 scopus 로고    scopus 로고
    • Bacterial diversity within the equine large intestine as revealed by molecular analysis of cloned 16S rRNA genes
    • Daly K., Stewart C., Flint H., Shirazi-Beechey S. Bacterial diversity within the equine large intestine as revealed by molecular analysis of cloned 16S rRNA genes. FEMS Microbiol. Ecol. 38:2001;141-151.
    • (2001) FEMS Microbiol. Ecol. , vol.38 , pp. 141-151
    • Daly, K.1    Stewart, C.2    Flint, H.3    Shirazi-Beechey, S.4
  • 10
    • 0024077813 scopus 로고
    • Enumeration of anaerobic bacterial microflora of the equine gastrointestinal tract
    • Mackie R.I., Wilkins C.A. Enumeration of anaerobic bacterial microflora of the equine gastrointestinal tract. Appl. Environ. Microbiol. 54:1988;2155-2160.
    • (1988) Appl. Environ. Microbiol. , vol.54 , pp. 2155-2160
    • MacKie, R.I.1    Wilkins, C.A.2
  • 11
    • 0028924371 scopus 로고
    • Taxon-specific probes for the cellulolytic genus Fibrobacter reveal abundant and novel equine-associated populations
    • Lin C., Stahl D. Taxon-specific probes for the cellulolytic genus Fibrobacter reveal abundant and novel equine-associated populations. Appl. Environ. Microbiol. 61:1995;1348-1351.
    • (1995) Appl. Environ. Microbiol. , vol.61 , pp. 1348-1351
    • Lin, C.1    Stahl, D.2
  • 12
    • 0032771478 scopus 로고    scopus 로고
    • Identification of Ruminococcus flavefaciens as the predominant cellulolytic bacterial species of the equine cecum
    • Julliand V., de Vaux A., Millet L., Fonty G. Identification of Ruminococcus flavefaciens as the predominant cellulolytic bacterial species of the equine cecum. Appl. Environ. Microbiol. 65:1999;3738-3741.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 3738-3741
    • Julliand, V.1    De Vaux, A.2    Millet, L.3    Fonty, G.4
  • 15
    • 0031889350 scopus 로고    scopus 로고
    • A rapid, specific membrane filtration procedure for enumeration of enterococci in recreational water
    • Messer J.W., Dufour A.P. A rapid, specific membrane filtration procedure for enumeration of enterococci in recreational water. Appl. Environ. Microbiol. 64:1998;678-680.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 678-680
    • Messer, J.W.1    Dufour, A.P.2
  • 16
    • 0034038056 scopus 로고    scopus 로고
    • Isolating PCR-quality DNA from human feces with a soil DNA kit
    • Clement B., Kitts C. Isolating PCR-quality DNA from human feces with a soil DNA kit. BioTechniques. 28:2000;640-645.
    • (2000) BioTechniques , vol.28 , pp. 640-645
    • Clement, B.1    Kitts, C.2
  • 17
    • 0001857117 scopus 로고
    • (Stackebrandt, E. and Goodfellow, M., Eds.), John Wiley and Sons, New York.
    • Lane, D.J. (1991) in: Nucleic Acid Techniques in Bacterial Systematics (Stackebrandt, E. and Goodfellow, M., Eds.), pp. 115-147. John Wiley and Sons, New York.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-147
    • Lane, D.J.1
  • 18
    • 0034126848 scopus 로고    scopus 로고
    • Identification of nonpoint source of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes
    • Bernhard A.E., Field K.G. Identification of nonpoint source of fecal pollution in coastal waters by using host-specific 16S ribosomal DNA genetic markers from fecal anaerobes. Appl. Environ. Microbiol. 66:2000;1587-1594.
    • (2000) Appl. Environ. Microbiol. , vol.66 , pp. 1587-1594
    • Bernhard, A.E.1    Field, K.G.2
  • 20
    • 0035175274 scopus 로고    scopus 로고
    • The RDP-II (Ribosomal Database Project)
    • Maidak B., et al. The RDP-II (Ribosomal Database Project). Nucleic Acids Res. 29:2001;173-174.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 173-174
    • Maidak, B.1
  • 21
    • 0038113595 scopus 로고    scopus 로고
    • North Carolina State University, Raleigh, NC.
    • Hall, T. (2001) BioEdit, v. 5.0.9. North Carolina State University, Raleigh, NC.
    • (2001) BioEdit, V. 5.0.9
    • Hall, T.1
  • 22
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J., Gibson T., Plewniak F., Jeanmougin F., Higgins D. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:1997;4876-4882.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4876-4882
    • Thompson, J.1    Gibson, T.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.5
  • 24
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution. 39:1985;783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 25
    • 0037178021 scopus 로고    scopus 로고
    • Typical freshwater bacteria: An analysis of available 16S rRNA gene sequence from plankton of lakes and rivers
    • Zwart G., Crump B., Kamst-van Agterveld M., Hagen F., Han S.-K. Typical freshwater bacteria: an analysis of available 16S rRNA gene sequence from plankton of lakes and rivers. Aquat. Microb. Ecol. 28:2002;141-155.
    • (2002) Aquat. Microb. Ecol. , vol.28 , pp. 141-155
    • Zwart, G.1    Crump, B.2    Kamst-Van Agterveld, M.3    Hagen, F.4    Han, S.-K.5
  • 26
    • 0032432257 scopus 로고    scopus 로고
    • Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria
    • Zwart G., Hiorns W., Methe B., van Agterveld M., Huismans R., Nold S., Zehr J., Laanbroek H. Nearly identical 16S rRNA sequences recovered from lakes in North America and Europe indicate the existence of clades of globally distributed freshwater bacteria. Syst. Appl. Microbiol. 21:1998;546-556.
    • (1998) Syst. Appl. Microbiol. , vol.21 , pp. 546-556
    • Zwart, G.1    Hiorns, W.2    Methe, B.3    Van Agterveld, M.4    Huismans, R.5    Nold, S.6    Zehr, J.7    Laanbroek, H.8
  • 27
    • 0032755259 scopus 로고    scopus 로고
    • Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
    • Suau A., Bonnet R., Sutren M., Godon J.-J., Gibson G., Collins M., Doré J. Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl. Environ. Microbiol. 65:1999;4799-4807.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 4799-4807
    • Suau, A.1    Bonnet, R.2    Sutren, M.3    Godon, J.-J.4    Gibson, G.5    Collins, M.6    Doré, J.7
  • 28
    • 0029881547 scopus 로고    scopus 로고
    • PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples
    • Wang R.-F., Cao W.-W., Cerniglia C. PCR detection and quantitation of predominant anaerobic bacteria in human and animal fecal samples. Appl. Environ. Microbiol. 62:1996;1242-1247.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 1242-1247
    • Wang, R.-F.1    Cao, W.-W.2    Cerniglia, C.3
  • 29
    • 0029900986 scopus 로고    scopus 로고
    • Human colonic biota studied by ribosomal DNA sequence analysis
    • Wilson K., Blitchington R. Human colonic biota studied by ribosomal DNA sequence analysis. Appl. Environ. Microbiol. 62:1996;2273-2278.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2273-2278
    • Wilson, K.1    Blitchington, R.2
  • 30
    • 0034803204 scopus 로고    scopus 로고
    • Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing and statistical ecology approaches
    • Kocherginskaya S.A., Aminov R.I., White B.A. Analysis of the rumen bacterial diversity under two different diet conditions using denaturing gradient gel electrophoresis, random sequencing and statistical ecology approaches. Anaerobe. 7:2001;119-134.
    • (2001) Anaerobe , vol.7 , pp. 119-134
    • Kocherginskaya, S.A.1    Aminov, R.I.2    White, B.A.3
  • 32
    • 0032759329 scopus 로고    scopus 로고
    • Molecular analysis of the microbial diversity present in the colonic wall, colonic lumen, and cecal lumen of a pig
    • Pryde S., Richardson A., Stewart C., Flint H. Molecular analysis of the microbial diversity present in the colonic wall, colonic lumen, and cecal lumen of a pig. Appl. Environ. Microbiol. 65:1999;5372-5377.
    • (1999) Appl. Environ. Microbiol. , vol.65 , pp. 5372-5377
    • Pryde, S.1    Richardson, A.2    Stewart, C.3    Flint, H.4
  • 34
    • 0030882719 scopus 로고    scopus 로고
    • Phenotypic and phylogenetic characterization of some Eubacterium-like isolates containing a novel type B wall murein from human feces: Description of Holdemania filiformis gen. nov., sp. nov
    • Willems A., Moore W., Weiss N., Collins M. Phenotypic and phylogenetic characterization of some Eubacterium-like isolates containing a novel type B wall murein from human feces: description of Holdemania filiformis gen. nov., sp. nov. Int. J. Syst. Bacteriol. 47:1997;1201-1204.
    • (1997) Int. J. Syst. Bacteriol. , vol.47 , pp. 1201-1204
    • Willems, A.1    Moore, W.2    Weiss, N.3    Collins, M.4
  • 35
    • 0345425661 scopus 로고    scopus 로고
    • Carnobacterium inhibens sp. nov., isolated from the intestine of Atlantic salmon (Salmo salar)
    • Jöborn A., Dorsch M., Christer O., Westerdahl A., Kjelleberg S. Carnobacterium inhibens sp. nov., isolated from the intestine of Atlantic salmon (Salmo salar). Int. J. Syst. Bacteriol. 49:1999;1891-1898.
    • (1999) Int. J. Syst. Bacteriol. , vol.49 , pp. 1891-1898
    • Jöborn, A.1    Dorsch, M.2    Christer, O.3    Westerdahl, A.4    Kjelleberg, S.5
  • 37
    • 0021156930 scopus 로고
    • Bacteroides of the human lower intestinal tract
    • Salyers A.A. Bacteroides of the human lower intestinal tract. Annu. Rev. Microbiol. 38:1984;293-313.
    • (1984) Annu. Rev. Microbiol. , vol.38 , pp. 293-313
    • Salyers, A.A.1
  • 38
    • 0031691877 scopus 로고    scopus 로고
    • Estimation of the relative abundance of different Bacteroides and Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences
    • Wood J., Scott K.P., Newbold C.J., Flint H.J. Estimation of the relative abundance of different Bacteroides and Prevotella ribotypes in gut samples by restriction enzyme profiling of PCR-amplified 16S rRNA gene sequences. Appl. Environ. Microbiol. 64:1998;3683-3689.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 3683-3689
    • Wood, J.1    Scott, K.P.2    Newbold, C.J.3    Flint, H.J.4
  • 39
    • 0004876415 scopus 로고    scopus 로고
    • (Mackie, R.I., White, B.A. and Isaacson, R.E., Eds.), Chapman and Hall, New York.
    • Salyers, A.A. and Shoemaker, N.B. (1997) in: Gastrointestinal Microbiology, Vol. 2 (Mackie, R.I., White, B.A. and Isaacson, R.E., Eds.), pp. 299-320. Chapman and Hall, New York.
    • (1997) Gastrointestinal Microbiology , vol.2 , pp. 299-320
    • Salyers, A.A.1    Shoemaker, N.B.2


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