Diurnal variation of cell proliferation in three bacterial taxa from coastal North Sea waters

Applied and Environmental Microbiology

Volumn 71, Issue 8, 2005, Pages 4638-4644

  Pernthaler, Annelie ^a,b   Pernthaler, Jakob ^a  

^a MAX PLANCK INSTITUTE FOR MARINE MICROBIOLOGY   (Germany)

^b CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; DNA; FLUORESCENCE; SEAWATER;

BACTERIOPLANKTON; CELL PROLIFERATION; MESOSCALE PATCHINESS; SITU HYBRIDIZATIONS;

CELLS;

BACTERIAL DNA; BROXURIDINE;

MICROBIOLOGY;

ARTICLE; BACTERIAL GROWTH; CELL PROLIFERATION; CIRCADIAN RHYTHM; DNA SYNTHESIS; FLUORESCENCE IN SITU HYBRIDIZATION; NONHUMAN; ROSEOBACTER; SEA;

ANIMALS; BACTERIA; BROMODEOXYURIDINE; CELL DIVISION; CIRCADIAN RHYTHM; DNA, BACTERIAL; IMMUNOHISTOCHEMISTRY; IN SITU HYBRIDIZATION, FLUORESCENCE; PLANKTON; ROSEOBACTER; SEASONS; SEAWATER;

BACTERIA (MICROORGANISMS); DINOPHYCEAE; ROSEOBACTER;

EID: 23744477855     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.8.4638-4644.2005     Document Type: Article

References (46)

1. Allgaier, M., H. Uphoff, A. Felske, and I. Wagner-Döbler. 2003. Aerobic anoxiygenic photosynthesis in Roseobacter clade bacteria from diverse marine habitats. Appl. Environ. Microbiol. 69:5051-5059.
2. Alonso, C., and J. Pernthaler. 2005. Incorporation of glucose at anoxic conditions by bacterioplankton from coastal North Sea surface waters. Appl. Environ. Microbiol. 71:1709-1716.
3. Armbrust, E. V., J. D. Bowen, R. J. Olson, and S. W. Chisholm. 1989. Effect of light on the cell cycle of a marine Synechococcus strain. Appl. Environ. Microbiol. 55:425-433.
4. Azam, F. 1998. Microbial control of oceanic carbon flux: the plot thickens. Science 280:694-696.
5. Beja, O., L. Aravind, E. V. Koonin, M. T. Suzuki, A. Hadd, L. P. Nguyen, S. Jovanovich, C. M. Gates, R. A. Feldman, J. L. Spudich, E. N. Spudich, and E. F. DeLong. 2000. Bacterial rhodopsin: evidence for a new type of phototrophy in the sea. Science 289:1902-1906.
6. Bettarel, Y., J. R. Dolan, K. Hornak, R. Lemee, M. Masin, M. L. Pedrotti, E. Rochelle-Newall, K. Simek, and T. Sime-Ngando. 2002. Strong, weak, and missing links in a microbial community of the NW Mediterranean Sea. FEMS Microbiol. Ecol. 42:451-462.
7. Binnie, C., and J. G. Coote. 1986. Inhibition of sporulation in Bacillus subtilis by bromodeoxyuridine and the effect on DNA replication. J. Gen. Microbiol. 132:493-502.
8. Bobrow, M. N., K. E. Adler, and A. Roth. April 2002. U.S patent 6,372,931 B1.
9. Choi, J. W., B. F. Sherr, and E. B. Sherr. 1999. Dead or alive? A large fraction of ETS-inactive marine bacterioplankton cells, as assessed by reduction of CTC, can become ETS-active with incubation and substrate addition. Aquat. Microb. Ecol. 18:105-115.
10. Coffin, R. B., J. P. Connolly, and P. S. Harris. 1993. Availability of dissolved organic carbon to bacterioplankton examined by oxygen utilization. Mar. Ecol. Prog. Ser. 101:9-22.
11. Cottrell, M. T., and D. L. Kirchman. 2003. Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary. Limnol. Oceanogr. 48:168-178.
12. Cottrell, M. T., and D. L. Kirchman. 2000. Natural assemblages of marine proteobacteria and members of the Cytophaga-Flavobacter cluster consuming low- and high-molecular-weight dissolved organic matter. Appl. Environ. Microbiol. 66:1692-1697.
13. Daims, H., A. Bruhl, R. Amann, K. H. Schleifer, and M. Wagner. 1999. The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set. Syst. Appl. Microbiol. 22:434-444.
14. Eilers, H., J. Pernthaler, F. O. Glöckner, and R. Amann. 2000. Culturability and in situ abundance of pelagic bacteria from the North Sea. Appl. Environ. Microbiol. 66:3044-3051.
15. Eilers, H., J. Pernthaler, J. Peplies, F. O. Glöckner, G. Gerdts, and R. Amann. 2001. Isolation of novel pelagic bacteria from the German Bight and their seasonal contribution to surface picoplankton. Appl. Environ. Microbiol. 67:5134-5142.
16. Gasol, J. M., M. D. Doval, J. Pinhassi, J. I. Calderon-Paz, N. Guixa-Boixareu, D. Vaqué, and C. Pedros-Alio. 1998. Diel variations in bacterial heterotrophic activity and growth in the northwestern Mediterranean Sea. Mar. Ecol. Prog. Ser. 164:107-124.
17. Gonzalez, J. M., and M. A. Moran. 1997. Numerical dominance of a group of marine bacteria in the alpha-subclass of the class Proteobacteria in coastal seawater. Appl. Environ. Microbiol. 63:4237-4242.
18. Hagström, A., J. Pinhassi, and U. L. Zweifel. 2001. Marine bacterioplankton show bursts of rapid growth induced by substrate shifts. Aquat. Microb. Ecol. 24:109-115.
19. Ilama, J., and N. Handa. 1992. Diel variation of water extractable carbohydrate composition of natural phytoplankton populations in Kinu Ura Bay. J. Exp. Mar. Biol. Ecol. 162:159-176.
20. Helmstetter, C. E. 1996. Timing of synthetic activities in the cell cycle, p. 1627-1639. In F. C. Neidhardt, R. Curtiss III, J. L. Ingraham, E. C. C. Lin, K. B. Low, B. Magasanik, W. S. Reznikoff, M. Riley, M. Schaechter, and H. E. Umbarger (ed.), Escherichia coli and Salmonella, 2nd ed. ASM Press, Washington, D.C.
21. Jeffrey, W. H., R. J. Pledger, P. Aas, S. Hager, R. B. Coffin, R. VonHaven, and D. L. Mitchell. 1996. Diel and depth profiles of DNA photodamage in bacterioplankton exposed to ambient solar ultraviolet radiation. Mar. Ecol. Prog. Ser. 137:283-291.
22. Kuipers, B., G. J. van Noort, J. Vosjan, and G. J. Herndl. 2000. Diel periodicity of bacterioplankton in the euphotic zone of the subtropical Atlantic Ocean. Mar. Ecol. Prog. Ser. 201:13-25.
23. Malmstrom, R. R., R. P. Kiene, and D. L. Kirchman. 2004. Identification and enumeration of bacteria assimilating dimethylsulfoniopropionate (DMSP) in the North Atlantic and Gulf of Mexico. Limnol. Oceanogr. 49:597-606.
24. McCandliss, R. R., S. E. Jones, M. Hearn, R. Latter, and C. F. Jago. 2002. Dynamics of suspended particles in coastal waters (southern North Sea) during a spring bloom. J. Sea Res. 47:285-302.
25. Müller-Niklas, G., A. Heissenberger, S. Puskaric, and G. J. Herndl. 1995. Ultraviolet-B radiation and bacterial metabolism in coastal waters. Aquat. Microb. Ecol. 9:111-116.
26. Paul, J. H., S. L. Pichard, J. B. Kang, G. M. F. Watson, and F. R. Tabita. 1999. Evidence for a clade-specific temporal and spatial separation in ribulose bisphosphate carboxylase gene expression in phytoplankton populations off Cape Hatteras and Bermuda. Limnol. Oceanogr. 44:12-23.
27. Pernthaler, A., J. Pernthaler, and R. Amann. 2002. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Appl. Environ. Microbiol. 68:3094-3101.
28. Pernthaler, A., J. Pernthaler, and R. Amann. 2004. Sensitive multicolour fluorescence in situ hybridization for the identification of environmental microorganisms, p. 711-726. In G. A. Kowalchuk, De Bruijn, F. J., I. M. Head, A. D. L. Akkermans, and J. D. van Elsas (ed.), Molecular microbial ecology manual, 2nd ed. Kluwer Academic Publishers, Dordrecht, The Netherlands.
29. Pernthaler, A., J. Pernthaler, M. Schattenhofer, and R. Amann. 2002. Identification of DNA-synthesizing bacterial cells in coastal North Sea plankton. Appl. Environ. Microbiol. 68:5728-5736.
30. Pernthaler, J., A. Pernthaler, and R. Amann. 2003. Automated enumeration of groups of marine picoplankton after fluorescence in situ hybridization. Appl. Environ. Microbiol. 69:2631-2637.
31. Pinhassi, J., M. M. Sala, H. Havskum, F. Peters, O. Guadayol, A. Malits, and C. L. Marrase. 2004. Changes in bacterioplankton composition under different phytoplankton regimens. Appl. Environ. Microbiol. 70:6753-6766.
32. Pinhassi, J., A. Winding, S. J. Binnerup, U. L. Zweifel, B. Riemann, and A. Hagström. 2003. Spatial variability in bacterioplankton community composition at the Skagerrak-Kattegat Front. Mar. Ecol. Prog. Ser. 255:1-13.
33. Porter, K. G., and Y. S. Feig. 1980. The use of DAPI for identifying and counting aquatic microflora. Limnol. Oceanogr. 25:943-948.
34. Sabehi, G., O. Beja, M. T. Suzuki, C. M. Preston, and E. F. DeLong. 2004. Different SAR86 subgroups harbour divergent proteorhodopsins. Environ. Microbiol. 6:903-910.
35. Schäfer, H., B. Abbas, H. Witte, and G. Müyzer. 2002. Genetic diversity of 'satellite' bacteria present in cultures of marine diatoms. FEMS Microbiol. Ecol. 42:25-35.
36. Selje, N., M. Simon, and T. Brinkhoff. 2004. A newly discovered Roseobacter cluster in temperate and polar oceans. Nature 427:445-448.
37. Sherr, E. B., B. F. Sherr, and T. J. Cowles. 2001. Mesoscale variability in bacterial activity in the Northeast Pacific Ocean off Oregon, USA. Aquat. Microb. Ecol. 25:21-30.
38. Shiba, T. 1991. Roseobacter litoralis gen-nov, sp-nov, and Roseobacter denitrificans sp. nov., aerobic pink pigmented bacteria which contain bacteriochlorophyll a. Syst. Appl. Microbiol. 14:140-145.
39. Smith, E. M., and P. A. del Giorgio. 2003. Low fractions of active bacteria in natural aquatic communities? Aquat. Microb. Ecol. 31:203-208.
40. Sorokin, D. Y. 1995. Sulfitobacter pontiacus gen-nov, sp-nov: a new heterotrophic bacterium from the black sea, specialized on sulfite oxidation. Microbiology 64:295-305.
41. Vaulot, D., D. Marie, R. J. Olson, and S. W. Chisholm. 1995. Growth of Prochlorococcus, a photosynthetic prokaryote, in the equatorial Pacific Ocean Science 268:1480-1482.
42. Verduin, J. 1957. Daytime variations in phytoplankton photosynthesis. Limnol. Oceanogr. 2:333-336.
43. Vila, M., R. Simo, R. P. Kiene, J. Pinhassi, J. A. Gonzalez, M. A. Moran, and C. Pedros-Alio. 2004. Use of microautoradiography combined with fluorescence in situ hybridization to determine dimethylsulfoniopropionate incorporation by marine bacterioplankton taxa. Appl. Environ. Microbiol. 70:4648-4657.
44. Wichels, A., C. Hummert, M. Elbrachter, B. Luckas, C. Schutt, and G. Gerdts. 2004. Bacterial diversity in toxic Alexandrium tamarense blooms off the Orkney Isles and the Firth of Forth. Helgoland Mar. Res. 58:93-103.
45. Wild-Allen, K., A. Lane, and P. Tett. 2002. Phytoplankton, sediment and optical observations in Netherlands coastal water in spring. J. Sea Res. 47:303-315.
46. Winter, C., G. J. Herndl, and M. G. Weinbauer. 2004. Diel cycles in viral infection of bacterioplankton in the North Sea. Aquat. Microb. Ecol. 35:207-216.