Distinct distribution pattern of abundance and diversity of aerobic anoxygenic phototrophic bacteria in the global ocean

Environmental Microbiology

Volumn 9, Issue 12, 2007, Pages 3091-3099

  Jiao, Nianzhi ^a   Zhang, Yao ^a   Zeng, Yonghui ^a   Hong, Ning ^a   Liu, Rulong ^a   Chen, Feng ^b   Wang, Pinxian ^c  

^a XIAMEN UNIVERSITY   (China)

^b UNIVERSITY OF MARYLAND   (United States)

^c TONGJI UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; CHLOROPHYLL; CHLOROPHYLL A; PUFM PROTEIN, BACTERIA; SEA WATER; UNCLASSIFIED DRUG;

AEROBIC BACTERIUM; ARTICLE; ATLANTIC OCEAN; CLASSIFICATION; DNA SEQUENCE; FLUORESCENCE MICROSCOPY; GENETIC VARIABILITY; GENETICS; GROWTH, DEVELOPMENT AND AGING; INDIAN OCEAN; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PACIFIC OCEAN; PHOTOSYNTHESIS; PHOTOTROPHY; PHYLOGENY;

ATLANTIC OCEAN; BACTERIA, AEROBIC; BACTERIAL PROTEINS; CHLOROPHYLL; DNA, BACTERIAL; INDIAN OCEAN; MICROSCOPY, FLUORESCENCE; MOLECULAR SEQUENCE DATA; PACIFIC OCEAN; PHOTOSYNTHETIC REACTION CENTER COMPLEX PROTEINS; PHOTOTROPHIC PROCESSES; PHYLOGENY; SEAWATER; SEQUENCE ANALYSIS, DNA; VARIATION (GENETICS);

BACTERIA (MICROORGANISMS); PHOTOBACTERIA;

EID: 35948971425     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2007.01419.x     Document Type: Article

References (38)

1. Beatty, J.T. (2002) On the natural selection and evolution of the aerobic phototrophic bacteria. Photosyn Res 73 : 109 114.
2. Beaufort, L., Lancelot, Y., Camberlin, P., Cayre, O., Vincent, E., Bassinot, F. Labeyrie, L. (1997) Insolation cycles as a major control of equatorial Indian Ocean primary production. Science 278 : 1451 1454.
3. Beja, O., Suzuki, M.T., Heidelberg, J.F., Nelson, W.C., Preston, C.M., Hamada, T., et al. (2002) Unsuspected diversity among marine aerobic anoxygenic phototrophs. Nature 415 : 630 633.
4. Bernhard, A.E., Colbert, D., McManus, J. Field, K.G. (2005) Microbial community dynamics based on 16S rRNA gene profiles in a Pacific Northwest estuary and its tributaries. FEMS Microbiol Ecol 52 : 115 128.
5. Bouvier, T.C. del Giorgio, P.A. (2002) Compositional changes in free-living bacterial communities along a salinity gradient in two temperate estuaries. Limnol Oceanogr 47 : 453 470.
6. Campbell, L., Nolla, H.A. Vaulot, D. (1994) The importance of Prochlorococcus to community structure in the central North Pacific Ocean. Limnol Oceanogr 39 : 954 961.
7. Chen, W.H. Wangersky, P.J. (1996) Rates of microbial degradation of dissolved organic carbon from phytoplankton cultures. J Plankon Res 18 : 1521 1533.
8. Cho, J., Stapels, M.D., Morris, R.M., Vergin, K.L., Schwalbach, M.S., Givan, S.A., et al. (2007) Polyphyletic photosynthetic reaction centre genes in oligotrophic marine Gammaproteobacteria. Environ Microbiol 9 : 1456 1463.
9. Cottrell, M.T., Mannino, A. Kirchman, D.L. (2006) Aerobic anoxygenic phototrophic bacteria in the Mid-Atlantic Bight and the North Pacific Gyre. Appl Environ Microbiol 72 : 557 564.
10. Hu, Y.H., Du, H.L., Jiao, N.Z. Zeng, Y.H. (2006) Abundant presence of the gamma-like proteobacterial pufM gene in oxic seawater. FEMS Microbiol Lett 263 : 200 206.
11. Fuchs, B.M., Spring, S., Teeling, H., Quast, C., Wulf, J., Schattenhofer, M., et al. (2007) Characterization of the first marine gammaproteobacterium capable of aerobic anoxygenic photosynthesis. Proc Natl Acad Sci USA 104 : 2891 2896.
12. Gregg, W.W., Conkright, M.E., Ginoux, P., O'Reilly, J.E. Casey, N.W. (2003) Ocean primary production and climate: global decadal changes. Geophys Res Lett 30 : 1809.
13. Jiao, N.Z., Yang, Y.H., Koshikawa, H. Watanabe, M. (2002) Influence of hydrographic conditions on picoplankton distribution in the East China Sea. Aquat Microb Ecol 30 : 37 48.
14. Jiao, N.Z., Zhang, Y. Chen, Y. (2006) Time series observation based InfraRed Epifluorescence Microscopic (TIREM) approach for accurate enumeration of bacteriochlorophyll-containing microbes in marine environments. J Microbiol Methods 65 : 442 452.
15. -1 on marine Synechococcus WH7803. I. Growth, pigmentation, and cell composition. Deep Sea Res 34 : 479 495.
16. Koblentz-Mishke, O.J., Valkovinsky, V.V. Kabanova, J.G. (1970) Plankton primary production of the world ocean. In Scientific Exploration of the South Pacific. Wooster, W.S. (ed.). Washington, DC, USA : National Academy of Science, pp. 183 193.
17. Koblizek, M., Beja, O., Bidigare, R.R., Christensen, S., Benitez-Nelson, B., Vetriani, C., et al. (2003) Isolation and characterization of Erythrobacter sp strains from the upper ocean. Arch Microbiol 180 : 327 338.
18. Kolber, Z.S., Van Dover, C.L., Niederman, R.A. Falkowski, P.G. (2000) Bacterial photosynthesis in surface waters of the open ocean. Nature 407 : 177 179.
19. Kolber, Z.S., Plumley, F.G., Lang, A.S., Beatty, J.T., Blankenship, R.E., VanDover, C.L., et al. (2001) Contribution of aerobic photoheterotrophic bacteria to the carbon cycle in the ocean. Science 292 : 2492 2495.
20. Leavitt, P.R., Findlay, D.L., Hall, R.I. Smol, J.P. (1999) Algal responses to dissolved organic carbon loss and pH decline during whole-lake acidification: evidence from paleolimnology. Limnol Oceanogr 44 : 757 773.
21. Mackey, D.J., Parslow, J., Higgins, H.W., Griffiths, F.B. O'Sullivan, J.E. (1995) Plankton productivity and biomass in the western equatorial Pacific: biological and physical controls. Deep Sea Res Part II Top Stud Oceanogr 42 : 499 533.
22. Malej, A., MozetiČ, P., Turk, V., TerziČ, S., Ahel, M. Cauwet, G. (2003) Changes in particulate and dissolved organic matter in nutrient-enriched enclosures from an area influenced by mucilage: the northern Adriatic Sea. J Plankton Res 25 : 949 966.
23. Masin, M., Zdun, A., Ston-Egiert, J., Nausch, M., Labrenz, M., Moulisova, V. Koblizek, M. (2006) Seasonal changes and diversity of aerobic anoxygenic phototrophs in the Baltic Sea. Aquat Microb Ecol 45 : 247 254.
24. Nishii, K., Nakano, S., Tamada, M., Manage, P.M., Nishibe, Y. Kawabata, Z. (2001) Microbial decomposition of dissolved organic matter in a hypertrophic pond. Limnology 2 : 207 212.
25. Parsons, T.R., Maita, Y. Lalli, C.M. (1984) A Manual of Chemical and Biological Methods for Seawater Analysis. New York, USA : Pergamon Press.
26. Perez, V., Fernandez, E., Maranon, E., Serret, P. Garcia-Soto, C. (2005) Seasonal and interannual variability of chlorophyll a and primary production in the Equatorial Atlantic: in situ and remote sensing observations. J Plankton Res 27 : 189 197.
27. Rusch, D.B., Halpern, A.L., Sutton, G., Heidelberg, K.B., Williamson, S., et al. (2007) The Sorcerer II global ocean sampling expedition: Northwest Atlantic through Eastern Tropical Pacific. PLoS Biol 5 : e77.
28. Schlitzer, R. (2004) Export production in the equatorial and North Pacific derived from dissolved oxygen, nutrient and carbon data. J Oceanogr 60 : 53 62.
29. Schloss, P.D. Handelsman, J. (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71 : 1501 1506.
30. Schwalbach, M.S. Fuhrman, J.A. (2005) Wide-ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR. Limnol Oceanogr 50 : 620 628.
31. Sieracki, M.E., Gilg, I.C., Thier, E.C., Poulton, N.J. Goericke, R. (2006) Distribution of planktonic aerobic anoxygenic photoheterotrophic bacteria in the northwest Atlantic. Limnol Oceanogr 51 : 38 46.
32. Søndergaard, M. Middelboe, M. (1995) A cross-system analysis of labile dissolved organic carbon. Mar Ecol Prog Ser 118 : 283 294.
33. Suyama, T., Shigematsu, T., Suzuki, T., Tokiwa, Y., Kanagawa, T., Nagashima, K.V.P. Hanada, S. (2002) Photosynthetic apparatus in Roseateles depolymerans 61A is transcriptionally induced by carbon limitation. Appl Environ Microbiol 68 : 1665 1673.
34. Xiong, J., Fischer, W.M., Inoue, K., Nakahara, M. Bauer, C.E. (2000) Molecular evidence for the early evolution of photosynthesis. Science 289 : 1724 1730.
35. Yurkov, V.V. Beatty, J.T. (1998) Aerobic anoxygenic phototrophic bacteria. Microbiol Mol Biol Rev 62 : 695 724.
36. Yutin, N., Suzuki, M.T. Beja, O. (2005) Novel primers reveal wider diversity among marine aerobic anoxygenic phototrophs. Appl Environ Microbiol 71 : 8958 8962.
37. Yutin, N., Suzuki, M.T., Teeling, H., Weber, M., Venter, J.C., Rusch, D.B. Beja, O. (2007) Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes. Environ Microbiol 9 : 1464 1475.
38. Zhang, Y. Jiao, N.Z. (2003) On the method for quantification of aerobic anoxygenic phototrophic bacteria. Chin Sci Bull 48 : 2549 2553.