Structural characterization of an integral membrane protein in its natural lipid environment by oxidative methionine labeling and mass spectrometry

Analytical Chemistry

Volumn 81, Issue 1, 2009, Pages 28-35

  Pan, Yan ^a   Stocks, Bradley B ^a   Brown, Leonid ^b   Konermann, Lars ^a  

^a UNIVERSITY OF WESTERN ONTARIO   (Canada)

^b UNIVERSITY OF GUELPH   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL TECHNIQUES; BI LAYERS; ELECTROSPRAY; HIGH REACTIVITIES; HYDROXYL RADICALS; IN-SITU; IN-VIVO; INTEGRAL MEMBRANE PROTEINS; LESSER EXTENTS; MEMBRANE PROTEINS; MODEL SYSTEMS; NANOSECOND LASERS; NATURAL LIPIDS; NATURAL PROTEINS; OXIDATION PATTERNS; OXIDATIVE LABELING; PURPLE MEMBRANES; SIDE CHAINS; SOLUBLE PROTEINS; STRUCTURAL CHARACTERIZATIONS; STRUCTURAL INVESTIGATIONS; STRUCTURAL PROBES; STRUCTURAL STUDIES; TANDEM MASS SPECTROMETRIES; TRYPTIC PEPTIDES;

AMINES; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; LABELING; LIPID BILAYERS; MASS SPECTROMETERS; MASS SPECTROMETRY; MEMBRANES; OXIDATION; PHOTOLYSIS; SOLVENTS; SPECTROMETERS; SPECTROMETRY; SPECTRUM ANALYSIS; SURFACE ACTIVE AGENTS;

PROTEINS;

AMINO ACID SEQUENCE; BACTERIORHODOPSINS; HALOBACTERIUM SALINARUM; HYDROGEN PEROXIDE; LASERS; LIPID BILAYERS; MEMBRANE PROTEINS; METHIONINE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OXIDATION-REDUCTION; PHOTOLYSIS; TANDEM MASS SPECTROMETRY;

EID: 58149473115     PISSN: 00032700     EISSN: None     Source Type: Journal    
DOI: 10.1021/ac8020449     Document Type: Article

References (83)

1. Kaltashov, I. A.; Eyles, S. J. Mass Spectrometry in Biophysics; John Wiley and Sons, Inc.: Hoboken, NJ, 2005.
2. Heck, A. J. R.; Van den Heuvel, R. H. H. Mass Spectrom. Rev. 2004, 23, 368-389.
3. Zubarev, R. A.; Zubarev, A. R.; Savitski, M. M. J. Am. Soc. Mass Spectrom. 2008, 19, 753-761.
4. Cooper, H. J.; Hakansson, K.; Marshall, A. G. Mass Spectrom. Rev. 2005, 24, 201-222.
5. Pan, J.; Jun, H.; Borchers, C. H.; Konermann, L. J. Am. Chem. Soc. 2008, 130, 11574-11575.
6. Englander, S. W. J. Am. Soc. Mass Spectrom. 2006, 17, 1481-1489.
7. Smith, D. L.; Deng, Y.; Zhang, Z. J. Mass Spectrom. 1997, 32, 135-146.
8. Wales, T. E.; Engen, J. R. Mass Spectrom. Rev. 2006, 25, 158-170.
9. Pantazatos, D.; Kim, J. S.; Klock, H. E.; Stevens, R. C.; Wilson, I. A.; Lelsey, S. A.; Woods, V. L. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 751-756.
10. Chalmers, M. J.; Busby, S. A.; Pascal, B. D.; He, Y.; Hendrickson, C. L.; Marshall, A. G.; Griffin, P. R. Anal. Chem. 2006, 78, 1005-1014.
11. Jha, S. K.; Udgaonkar, J. B. J. Biol. Chem. 2007, 282, 37479-37491.
12. Chen, H.; Schuster, M. C.; Sfyroera, G.; Geisbrecht, B. V.; Lambris, J. D. J. Am. Soc. Mass Spectrom. 2008, 19, 55-65.
13. Mendoza, V. L.; Vachet, R. W. Anal. Chem. 2008, 80, 2895-2904.
14. Xu, G.; Chance, M. R. Chem. Rev. 2007, 107, 3514-3543.
15. Konermann, L.; Tong, X.; Pan, Y. J. Mass Spectrom. 2008, 43, 1021-1036.
16. Maleknia, S. D.; Wong, J. W. H.; Downard, K. M. Photochem. Photobiol. Sci. 2004, 3, 741-748.
17. McClintock, C.; Kertesz, V.; Hettich, R. L. Anal. Chem. 2008, 80, 3304-3317.
18. Sharp, J. S.; Sullivan, D. M.; Cavanagh, J.; Tomer, K. B. Biochemistry 2006, 45, 6260-6266.
19. Nukuna, B. N.; Sun, G.; Anderson, V. E. Free Radical Biol. Med. 2004, 37, 1203-1213.
20. West, G. M.; Tang, L.; Fitzgerald, M. C. Anal. Chem. 2008, 80, 4175-4185.
21. Bridgewater, J. D.; Lim, J.; Vachet, R. W. Anal. Chem. 2006, 78, 2432-2438.
22. Sharp, J. S.; Becker, J. M.; Hettich, R. L. Anal. Chem. 2004, 76, 672-683.
23. Hambly, D. M.; Gross, M. L. J. Am. Soc. Mass Spectrom. 2005, 16, 2057-2063.
24. Tong, X.; Wren, J. C.; Konermann, L. Anal. Chem. 2008, 80, 2222-2231.
25. Takamoto, K.; Chance, M. R. Annu. Rev. Biophys. Biomol. Struct. 2006, 35, 251-276.
26. Xu, G.; Chance, M. R. Anal. Chem. 2005, 77, 4549-4555.
27. Xu, G.; Chance, M. R. Anal. Chem. 2005, 77, 2437-2449.
28. Sharp, J. S.; Becker, J. M.; Hettich, R. L. Anal. Biochem. 2003, 313, 216-225.
29. Xu, G.; Kiselar, J.; He, Q.; Chance, M. R. Anal. Chem. 2005, 77, 3029-3037.
30. Aye, T. T.; Low, T. Y.; Sze, S. K. Anal. Chem. 2005, 77, 5814-5822.
31. Maleknia, S. D.; Kiselar, J. G.; Downard, K. M. Rapid Commun. Mass Spectrom. 2002, 16, 53-61.
32. Kiselar, J. G.; Maleknia, S. D.; Sullivan, M.; Downard, K. M.; Chance, M. R. Int. J. Radiat. Biol. 2002, 78, 101-114.
33. Wu, C. C.; Yates, J. R. Nat. Biotechnol. 2003, 21, 262-267.
34. George, S. R.; O'Dowd, B. F.; Lee, S. P. Nat. Rev. Drug Discovery 2002, 1, 808-820.
35. Ostermeier, C.; Michel, H. Curr. Opin. Struct. Biol. 1997, 7, 697-701.
36. Barrera, N. P.; Di Bartolo, N.; Booth, P. J.; Robinson, C. V. Science 2008, 321, 243-246.
37. Ball, L. E.; Oatis, J. E.; Charmasiri, K.; Busman, M.; Wang, J.; Cowdern, L. B.; Galijatiovic, A.; Chen, N.; Crouch, R. K.; Knapp, D. R. Protein Sci. 1998, 7, 758-764.
38. Whitelegge, J. P.; Gundersen, C. B.; Faull, K. F. Protein Sci. 1998, 7, 1423-1430.
39. Hufnagel, P.; Schweiger, U.; Eckerskorn, C.; Oesterhelt, D. Anal. Biochem. 1996, 243, 46-54.
40. Weiner, J. H.; Li, L. Biochim. Biophys. Acta 2008, 1778, 1698-1713.
41. le Coutre, J.; Whitelegge, J. P.; Gross, A.; Turk, E.; Wright, E. M.; Kaback, H. R.; Faull, K. F. Biochemistry 2000, 39, 4237-4242.
42. Blonder, J.; Conrads, T. P.; Yu, L.; Terunuma, A.; Issaq, H. J.; Vogel, J. C.; Veenstra, T. D. Proteomics 2004, 4, 31-45.
43. Carroll, J.; Altman, M. C.; Fearnley, I. M.; Walker, J. E. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 14330-14335.
44. Trimpin, S.; Deinzer, M. L. Anal. Chem. 2007, 79, 71-78.
45. Wu, C. C.; MacCoss, M. J.; Howell, K. E.; Yates, J. R. Nat. Biotechnol. 2003, 21, 532-538.
46. Joh, N. H.; Min, A.; Faham, S.; Whitelegge, J. P.; Yang, D.; Woods, V. L.; Bowie, J. U. Nature 2008, 453, 1266-1270.
47. Busenlehner, L. S.; Salomonsson, L.; Brzezinski, P.; Armstrong, R. N. Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 15398-15403.
48. Demmers, J. A. A.; Haverkamp, J.; Heck, A. J. R.; Koeppe, R. E.; Killian, A. Proc. Natl. Acad. Sci. U.S.A. 2000, 97, 3189-3194.
49. Leite, J. F.; Cascio, M. Biochemistry 2002, 41, 6140-6148.
50. Weinglass, A. B.; Whitelegge, J. P.; Hu, Y.; Verner, G. E.; Faull, K. F.; Kaback, H. R EMBO J. 2003, 22, 1467-1477.
51. Wang, X.; Kim, S.-H.; Ablonczy, Z.; Crouch, R. K.; Knapp, D. R. Biochemistry 2004, 43, 11153-11162.
52. Leite, J. F.; Blanton, M. P.; Shahgholi, M.; Dougherty, D. A.; Lester, H. A. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 13054-13059.
53. Yu, Y.; Gilar, M.; Gebler, J. C. Rapid Commun. Mass Spectrom. 2004, 18, 711-715.
54. Ablonczy, Z.; Kono, M.; Crouch, R. K.; Knapp, D. R. Anal. Chem. 2001, 73, 4774-4779.
55. Hambly, D. M.; Gross, M. L. Int. J. Mass Spectrom. 2007, 259, 124-129.
56. Huang, K.; Bayley, H.; Liao, M.; London, E.; Khorana, H. G. J. Biol. Chem. 1981, 256, 3802-3809.
57. Curnow, P.; Booth, P. J. Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 18970-18975.
58. Oesterhelt, D.; Brauchle, C.; Hampp, N. Q. Rev. Biophys. 1991, 24, 425-478.
59. Birge, R. R.; Gillespie, N. B.; Izaguirre, E. W.; Kusnetzow, A.; Lawrence, A. F.; Singh, D.; Song, W.; Schmidt, E.; Stuart, J. A.; Seetharaman, S.; Wise, K. J. J. Phys. Chem. B 1999, 103, 10746-10766.
60. Subramaniam, S.; Henderson, R. Nature 2000, 406, 653-657.
61. Faham, S.; Boulting, G. L.; Massey, E. A.; Yohannan, S.; Yang, D.; Bowie, J. U. Protein Sci. 2005, 14, 836-840.
62. Henderson, R.; Unwin, P. N. Nature 1975, 257, 28-32.
63. Wan, C.; Qian, J.; Johnson, C. K. Biophys. J. 1993, 65, 927-938.
64. Blaurock, A. E.; Stoeckenius, W. Nature (London), New Biol. 1971, 233, 152-155.
65. Szundi, I.; Stoeckenius, W. Proc. Natl. Acad. Sci. U.S.A. 1987, 84, 3681-3684.
66. Taneva, S. G.; Koynova, R.; Tenchov, B. FEBS Lett. 1994, 345, 154-158.
67. Ni, B.; Chang, M.; Duschl, A.; Lanyi, J.; Needleman, R. Gene 1990, 90, 169-172.
68. Oesterhelt, D.; Stoeckenius, W. Methods Enzymol. 1974, 31, 667-678.
69. Faham, S.; Yang, D.; Bare, E.; Yohannan, S.; Whitelegge, J. P.; Bowie, J. U. J. Mol. Biol. 2004, 335, 297-305.
70. Wessel, D.; Flugge, U. I. Anal. Biochem. 1984, 138, 141-143.
71. Yu, Y.; Gilar, M.; Lee, P. J.; Bouvier, S. P.; Gebler, J. C. Anal. Chem. 2003, 75, 6023-6028.
72. Wong, J. W. H.; Maleknia, S. D.; Downard, K. M. Anal. Chem. 2003, 75, 1557-1563.
73. Xu, G.; Takamoto, K.; Chance, M. R. Anal. Chem. 2003, 75, 6995-7007.
74. Tong, X.; Wren, J. C.; Konermann, L. Anal. Chem. 2007, 79, 6376-6382.
75. Cech, N. B.; Enke, C. G. Mass Spectrom. Rev. 2001, 20, 362-387.
76. Weinglass, A. B.; Soskine, M.; Vazquez, J.; Whitelegge, J. P.; Faull, K. F.; Kaback, H. R.; Schuldiner, S. J. Biol. Chem. 2005, 280, 7487-7492.
77. Vogt, W. Free Radical Biol. Med. 1995, 18, 93-105.
78. Hixson, K. K.; Todriguez, N.; Camp, D. G., II; Strittmatter, E. F.; Lipton, M. S.; Smith, R. D. Electrophoresis 2002, 23, 3224-3232.
79. Seigneuret, M.; Kainosho, M. FEBS Lett. 1993, 327, 7-12.
80. Buxton, G. V.; Greenstock, C. L.; Helman, W. P.; Ross, A. B. J. Phys. Chem. Ref. Data 1988, 17, 513-886.
81. Vazquez-Ibar, J.; Guan, L.; Weinglass, A. B.; Verner, G.; Gordillo, R.; Kaback, H. R. J. Biol. Chem. 2004, 279, 49214-49221.
82. Kyte, J.; Doolittle, R. J. Mol. Biol. 1982, 157, 105-132.
83. Marx, D. ChemPhysChem 2006, 7, 1848-1870.