Prediction of TF target sites based on atomistic models of protein-DNA complexes

BMC Bioinformatics

Volumn 9, Issue , 2008, Pages

  Angarica, Vladimir Espinosa ^a,b   Pérez, Abel Gonzales ^c   Vasconcelos, Ana T ^d   Collado Vides, Julio ^b   Contreras Moreira, Bruno ^b,e,f  

^a UNIVERSITY OF ZARAGOZA   (Spain)

^b INSTITUTO DE CIENCIAS FÍSICAS   (Mexico)

^c Centro Nacional de Bioinformática Industria y San José   (Cuba)

^d LABORATÓRIO NACIONAL DE COMPUTAÇÃO CIENTÍFICA   (Brazil)

^e CSIC   (Spain)

^f FUNDACIÓN ARAID   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING SPECIFICITIES; CIS-REGULATORY ELEMENTS; CO-ORDINATED GENE EXPRESSION; INTERACTION POTENTIALS; PROTEIN-DNA COMPLEXES; PROTEIN-DNA INTERACTIONS; STATISTICAL MODELING; STRUCTURAL INFORMATION;

ALGORITHMS; FORECASTING; GENE EXPRESSION; PROTEINS;

DNA;

TRANSCRIPTION FACTOR; DNA; DNA BINDING PROTEIN; PROTEIN;

ALGORITHM; ARTICLE; BINDING AFFINITY; BINDING SITE; CONTROLLED STUDY; DNA PROTEIN COMPLEX; MOLECULAR RECOGNITION; PREDICTION; PROTEIN DNA INTERACTION; PROTEIN MOTIF; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; STATISTICAL MODEL; AMINO ACID SEQUENCE; AREA UNDER THE CURVE; BIOLOGICAL MODEL; BIOLOGY; CHEMISTRY; GENETICS; METABOLISM; METHODOLOGY; NUCLEOTIDE SEQUENCE; PROTEIN BINDING; PROTEIN SECONDARY STRUCTURE; REGRESSION ANALYSIS; ROC CURVE; X RAY CRYSTALLOGRAPHY;

EUKARYOTA; PROKARYOTA;

ALGORITHMS; AMINO ACID SEQUENCE; AREA UNDER CURVE; BASE SEQUENCE; BINDING SITES; COMPUTATIONAL BIOLOGY; CRYSTALLOGRAPHY, X-RAY; DNA; DNA-BINDING PROTEINS; MODELS, BIOLOGICAL; MODELS, STATISTICAL; PROTEIN BINDING; PROTEIN STRUCTURE, SECONDARY; PROTEINS; REGRESSION ANALYSIS; ROC CURVE; TRANSCRIPTION FACTORS;

EID: 56749102973     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-9-436     Document Type: Article

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