-
1
-
-
34548697503
-
Deletion of ultraconserved elements yields viable mice
-
Ahituv N, Zhu Y, Visel A et al 2007) Deletion of ultraconserved elements yields viable mice. Public Library of Science, Biology, 5, 1906 1911.
-
(2007)
Public Library of Science, Biology
, vol.5
, pp. 1906-1911
-
-
Ahituv, N.1
Zhu, Y.2
Visel, A.3
Al, E.4
-
2
-
-
27144491328
-
Adaptive evolution of non-coding DNA in Drosophila
-
Andolfatto P (2005) Adaptive evolution of non-coding DNA in Drosophila. Nature, 437, 1149 1152.
-
(2005)
Nature
, vol.437
, pp. 1149-1152
-
-
Andolfatto, P.1
-
3
-
-
33646244720
-
Positive selection, relaxation, and acceleration in the evolution of the human and chimp genomes
-
Arbiza L, Dopazo J, Dopazo H (2006) Positive selection, relaxation, and acceleration in the evolution of the human and chimp genomes. Public Library of Science, Computational Biology, 2, e38.
-
(2006)
Public Library of Science, Computational Biology
, vol.2
-
-
Arbiza, L.1
Dopazo, J.2
Dopazo, H.3
-
4
-
-
34547632934
-
Widely distributed noncoding purifying selection in the human genome
-
Asthana S, Noble WS, Kryukov G et al 2007) Widely distributed noncoding purifying selection in the human genome. Proceedings of the National Academy of Sciences, USA, 104, 12410 12415.
-
(2007)
Proceedings of the National Academy of Sciences, USA
, vol.104
, pp. 12410-12415
-
-
Asthana, S.1
Noble, W.S.2
Kryukov, G.3
Al, E.4
-
5
-
-
44849107389
-
Natural selection in avian protein-coding genes expressed in brain
-
Axelsson E, Hultin-Rosenberg L, Brandström M et al 2008) Natural selection in avian protein-coding genes expressed in brain. Molecular Ecology, 17, 3008 3017.
-
(2008)
Molecular Ecology
, vol.17
, pp. 3008-3017
-
-
Axelsson, E.1
Hultin-Rosenberg, L.2
Brandström, M.3
Al, E.4
-
6
-
-
33745373606
-
Primate segmental duplications: Crucibles of evolution, diversity and disease
-
Bailey JA, Eichler EE (2006) Primate segmental duplications: crucibles of evolution, diversity and disease. Nature Reviews Genetics, 7, 552 564.
-
(2006)
Nature Reviews Genetics
, vol.7
, pp. 552-564
-
-
Bailey, J.A.1
Eichler, E.E.2
-
7
-
-
34250659350
-
More genes underwent positive selection in chimpanzee evolution than in human evolution
-
Bakewell MA, Shi P, Zhang JZ (2007) More genes underwent positive selection in chimpanzee evolution than in human evolution. Proceedings of the National Academy of Sciences, USA, 104, 7489 7494.
-
(2007)
Proceedings of the National Academy of Sciences, USA
, vol.104
, pp. 7489-7494
-
-
Bakewell, M.A.1
Shi, P.2
Zhang, J.Z.3
-
8
-
-
35948940895
-
Population genomics: Whole-genome analysis of polymorphism and divergence in Drosophila simulans
-
Begun DJ, Holloway AK, Stevens K et al 2007) Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans. Public Library of Science, Biology, 5, 2534 2559.
-
(2007)
Public Library of Science, Biology
, vol.5
, pp. 2534-2559
-
-
Begun, D.J.1
Holloway, A.K.2
Stevens, K.3
Al, E.4
-
11
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Birney E, Stamatoyannopoulos JA, Dutta A et al 2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature, 447, 799 816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
Birney, E.1
Stamatoyannopoulos, J.A.2
Dutta, A.3
Al, E.4
-
12
-
-
44849095421
-
Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias
-
Brandström M, Ellegren H (2008) Genome-wide analysis of microsatellite polymorphism in chicken circumventing the ascertainment bias. Genome Research, 18, 881 887.
-
(2008)
Genome Research
, vol.18
, pp. 881-887
-
-
Brandström, M.1
Ellegren, H.2
-
13
-
-
43149107930
-
Quality scores and SNP detection in sequencing-by-synthesis systems
-
Brockman W, Alvarez P, Young S et al 2008) Quality scores and SNP detection in sequencing-by-synthesis systems. Genome Research, 18, 763 770.
-
(2008)
Genome Research
, vol.18
, pp. 763-770
-
-
Brockman, W.1
Alvarez, P.2
Young, S.3
Al, E.4
-
14
-
-
27144539145
-
Natural selection on protein-coding genes in the human genome
-
Bustamante CD, Fledel-Alon A, Williamson S et al 2005) Natural selection on protein-coding genes in the human genome. Nature, 437, 1153 1157.
-
(2005)
Nature
, vol.437
, pp. 1153-1157
-
-
Bustamante, C.D.1
Fledel-Alon, A.2
Williamson, S.3
Al, E.4
-
15
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci P, Kasukawa T, Katayama S et al 2005) The transcriptional landscape of the mammalian genome. Science, 309, 1559 1563.
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
Kasukawa, T.2
Katayama, S.3
Al, E.4
-
16
-
-
22744439568
-
Evolution at two levels: On genes and form
-
Carroll SB (2005) Evolution at two levels: on genes and form. Public Library of Science, Biology, 3, 1159 1166.
-
(2005)
Public Library of Science, Biology
, vol.3
, pp. 1159-1166
-
-
Carroll, S.B.1
-
17
-
-
43249086697
-
Analysis of chimpanzee history based on genome sequence alignments
-
Caswell JL, Mallick S, Richter DJ et al 2008) Analysis of chimpanzee history based on genome sequence alignments. Public Library of Science, Genetics, 4, e1000057.
-
(2008)
Public Library of Science, Genetics
, vol.4
-
-
Caswell, J.L.1
Mallick, S.2
Richter, D.J.3
Al, E.4
-
18
-
-
30744432134
-
Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals
-
Chamary JV, Hurst LD (2005) Evidence for selection on synonymous mutations affecting stability of mRNA secondary structure in mammals. Genome Biology, 6, R75.
-
(2005)
Genome Biology
, vol.6
-
-
Chamary, J.V.1
Hurst, L.D.2
-
19
-
-
31144465926
-
Hearing silence: Non-neutral evolution at synonymous sites in mammals
-
Chamary JV, Parmley JL, Hurst LD (2006) Hearing silence: non-neutral evolution at synonymous sites in mammals. Nature Reviews Genetics, 7, 98 108.
-
(2006)
Nature Reviews Genetics
, vol.7
, pp. 98-108
-
-
Chamary, J.V.1
Parmley, J.L.2
Hurst, L.D.3
-
20
-
-
0033083072
-
Comparative genomics: The key to understanding the human genome project
-
Clark MS (1999) Comparative genomics: the key to understanding the human genome project. Bioessays, 21, 121 130.
-
(1999)
Bioessays
, vol.21
, pp. 121-130
-
-
Clark, M.S.1
-
21
-
-
47149117454
-
Evolution of genes and genomes on the Drosophila phylogeny
-
Clark AG, Eisen MB, Smith DR et al 2007) Evolution of genes and genomes on the Drosophila phylogeny. Nature, 450, 203 218.
-
(2007)
Nature
, vol.450
, pp. 203-218
-
-
Clark, A.G.1
Eisen, M.B.2
Smith, D.R.3
Al, E.4
-
22
-
-
0346243805
-
Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios
-
Clark AG, Glanowski S, Nielsen R et al 2003) Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios. Science, 302, 1960 1963.
-
(2003)
Science
, vol.302
, pp. 1960-1963
-
-
Clark, A.G.1
Glanowski, S.2
Nielsen, R.3
Al, E.4
-
25
-
-
18744395183
-
Numerous potentially functional but non-genic conserved sequences on human chromosome 21
-
Dermitzakis ET, Reymond A, Lyle R et al 2002) Numerous potentially functional but non-genic conserved sequences on human chromosome 21. Nature, 420, 578 582.
-
(2002)
Nature
, vol.420
, pp. 578-582
-
-
Dermitzakis, E.T.1
Reymond, A.2
Lyle, R.3
Al, E.4
-
26
-
-
0242662461
-
Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs)
-
Dermitzakis ET, Reymond A, Scamuffa N et al 2003) Evolutionary discrimination of mammalian conserved non-genic sequences (CNGs). Science, 302, 1033 1035.
-
(2003)
Science
, vol.302
, pp. 1033-1035
-
-
Dermitzakis, E.T.1
Reymond, A.2
Scamuffa, N.3
Al, E.4
-
27
-
-
31744448843
-
Conserved noncoding sequences are selectively constrained and not mutation cold spots
-
Drake JA, Bird C, Nemesh J et al 2006) Conserved noncoding sequences are selectively constrained and not mutation cold spots. Nature Genetics, 38, 223 227.
-
(2006)
Nature Genetics
, vol.38
, pp. 223-227
-
-
Drake, J.A.1
Bird, C.2
Nemesh, J.3
Al, E.4
-
28
-
-
0042027896
-
Structural dynamics of eukaryotic chromosome evolution
-
Eichler EE, Sankoff D (2003) Structural dynamics of eukaryotic chromosome evolution. Science, 301, 793 797.
-
(2003)
Science
, vol.301
, pp. 793-797
-
-
Eichler, E.E.1
Sankoff, D.2
-
29
-
-
0029988841
-
Small is beautiful: Comparative genomics with the pufferfish (Fugu rubripes
-
Elgar G, Sandford R, Aparicio S, Macrae A, Venkatesh B, Brenner S (1996) Small is beautiful: comparative genomics with the pufferfish (Fugu rubripes). Trends in Genetics, 12, 145 150.
-
(1996)
Trends in Genetics
, vol.12
, pp. 145-150
-
-
Elgar, G.1
Sandford, R.2
Aparicio, S.3
MacRae, A.4
Venkatesh, B.5
Brenner, S.6
-
30
-
-
41149166756
-
Sequencing goes 454 and takes large-scale genomics into the wild
-
Ellegren H (2008) Sequencing goes 454 and takes large-scale genomics into the wild. Molecular Ecology, 17, 1629 1631.
-
(2008)
Molecular Ecology
, vol.17
, pp. 1629-1631
-
-
Ellegren, H.1
-
31
-
-
34548013932
-
The evolution of sex-biased genes and sex-biased gene expression
-
Ellegren H, Parsch J (2007) The evolution of sex-biased genes and sex-biased gene expression. Nature Reviews Genetics, 8, 689 698.
-
(2007)
Nature Reviews Genetics
, vol.8
, pp. 689-698
-
-
Ellegren, H.1
Parsch, J.2
-
32
-
-
40749097777
-
Genetic basis of fitness differences in natural populations
-
Ellegren H, Sheldon BC (2008) Genetic basis of fitness differences in natural populations. Nature, 452, 169 175.
-
(2008)
Nature
, vol.452
, pp. 169-175
-
-
Ellegren, H.1
Sheldon, B.C.2
-
34
-
-
1642475221
-
Extensive gene traffic on the mammalian X chromosome
-
Emerson JJ, Kaessmann H, Betrán E, Long M (2004) Extensive gene traffic on the mammalian X chromosome. Science, 303, 537 540.
-
(2004)
Science
, vol.303
, pp. 537-540
-
-
Emerson, J.J.1
Kaessmann, H.2
Betrán, E.3
Long, M.4
-
35
-
-
33748473348
-
The genomic rate of adaptive evolution
-
Eyre-Walker A (2006) The genomic rate of adaptive evolution. Trends in Ecology & Evolution, 21, 569 575.
-
(2006)
Trends in Ecology & Evolution
, vol.21
, pp. 569-575
-
-
Eyre-Walker, A.1
-
36
-
-
33745347447
-
The distribution of fitness effects of new deleterious amino acid mutations in humans
-
Eyre-Walker A, Woolfit M, Phelps T (2006) The distribution of fitness effects of new deleterious amino acid mutations in humans. Genetics, 173, 891 900.
-
(2006)
Genetics
, vol.173
, pp. 891-900
-
-
Eyre-Walker, A.1
Woolfit, M.2
Phelps, T.3
-
37
-
-
0037186608
-
Testing the neutral theory of molecular evolution with genomic data from Drosophila
-
Fay JC, Wyckoff GJ, Wu CI (2002) Testing the neutral theory of molecular evolution with genomic data from Drosophila. Nature, 415, 1024 1026.
-
(2002)
Nature
, vol.415
, pp. 1024-1026
-
-
Fay, J.C.1
Wyckoff, G.J.2
Wu, C.I.3
-
38
-
-
34948898172
-
A model of segmental duplication formation in Drosophila melanogaster
-
Fiston-Lavier AS, Anxolabehere D, Quesneville H (2007) A model of segmental duplication formation in Drosophila melanogaster. Genome Research, 17, 1458 1470.
-
(2007)
Genome Research
, vol.17
, pp. 1458-1470
-
-
Fiston-Lavier, A.S.1
Anxolabehere, D.2
Quesneville, H.3
-
39
-
-
3242674492
-
Unexpected conserved non-coding DNA blocks in mammals
-
Gaffney DJ, Keightley PD (2004) Unexpected conserved non-coding DNA blocks in mammals. Trends in Genetics, 20, 332 337.
-
(2004)
Trends in Genetics
, vol.20
, pp. 332-337
-
-
Gaffney, D.J.1
Keightley, P.D.2
-
40
-
-
34247352040
-
Evolutionary and biomedical insights from the rhesus macaque genome
-
Gibbs RA, Rogers J, Katze MG et al 2007) Evolutionary and biomedical insights from the rhesus macaque genome. Science, 316, 222 234.
-
(2007)
Science
, vol.316
, pp. 222-234
-
-
Gibbs, R.A.1
Rogers, J.2
Katze, M.G.3
Al, E.4
-
41
-
-
1842684068
-
Genome sequence of the brown Norway rat yields insights into mammalian evolution
-
Gibbs RA, Weinstock GM, Metzker ML et al 2004) Genome sequence of the brown Norway rat yields insights into mammalian evolution. Nature, 428, 493 521.
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
Gibbs, R.A.1
Weinstock, G.M.2
Metzker, M.L.3
Al, E.4
-
42
-
-
49749101118
-
Similar numbers but different repertoires if olfactory receptor genes in humans and chimpanzees
-
Go Y, Niimura Y (2008) Similar numbers but different repertoires if olfactory receptor genes in humans and chimpanzees. Molecular Biology and Evolution, 25, 1897 1907.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 1897-1907
-
-
Go, Y.1
Niimura, Y.2
-
43
-
-
39749133684
-
Toward a selection theory of molecular evolution
-
Hahn MW (2008) Toward a selection theory of molecular evolution. Evolution, 62, 255 265.
-
(2008)
Evolution
, vol.62
, pp. 255-265
-
-
Hahn, M.W.1
-
44
-
-
37249061101
-
Accelerated rate of gene gain and loss in primates
-
Hahn MW, Demuth JP, Han SG (2007a) Accelerated rate of gene gain and loss in primates. Genetics, 177, 1941 1949.
-
(2007)
Genetics
, vol.177
, pp. 1941-1949
-
-
Hahn, M.W.1
Demuth, J.P.2
Han, S.G.3
-
45
-
-
36048950933
-
Gene family evolution across 12 Drosophila genomes
-
Hahn MW, Han MV, Han SG (2007b) Gene family evolution across 12 Drosophila genomes. Public Library of Science, Genetics, 3, 2135 2146.
-
(2007)
Public Library of Science, Genetics
, vol.3
, pp. 2135-2146
-
-
Hahn, M.W.1
Han, M.V.2
Han, S.G.3
-
46
-
-
38549148421
-
Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes
-
Heger A, Ponting CP (2007) Evolutionary rate analyses of orthologs and paralogs from 12 Drosophila genomes. Genome Research, 17, 1837 1849.
-
(2007)
Genome Research
, vol.17
, pp. 1837-1849
-
-
Heger, A.1
Ponting, C.P.2
-
47
-
-
10644283823
-
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
-
Hillier LW, Miller W, Birney E et al 2004) Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature, 432, 695 716.
-
(2004)
Nature
, vol.432
, pp. 695-716
-
-
Hillier, L.W.1
Miller, W.2
Birney, E.3
Al, E.4
-
48
-
-
34247855863
-
The locus of evolution: Evo devo and the genetics of adaptation
-
Hoekstra HE, Coyne JA (2007) The locus of evolution: evo devo and the genetics of adaptation. Evolution, 61, 995 1016.
-
(2007)
Evolution
, vol.61
, pp. 995-1016
-
-
Hoekstra, H.E.1
Coyne, J.A.2
-
49
-
-
19944431653
-
Transcriptome analysis for the chicken based on 19 626 finished cDNA sequences and 485 337 expressed sequence tags
-
Hubbard SJ, Grafham DV, Beattie KJ et al 2005) Transcriptome analysis for the chicken based on 19 626 finished cDNA sequences and 485 337 expressed sequence tags. Genome Research, 15, 174 183.
-
(2005)
Genome Research
, vol.15
, pp. 174-183
-
-
Hubbard, S.J.1
Grafham, D.V.2
Beattie, K.J.3
Al, E.4
-
50
-
-
36849073678
-
Sequencing breakthroughs for genomic ecology and evolutionary biology
-
Hudson ME (2008) Sequencing breakthroughs for genomic ecology and evolutionary biology. Molecular Ecology Resources, 8, 3 17.
-
(2008)
Molecular Ecology Resources
, vol.8
, pp. 3-17
-
-
Hudson, M.E.1
-
51
-
-
34748817463
-
Looking for Darwin in all the wrong places: The misguided quest for positive selection at the nucleotide sequence level
-
Hughes AL (2007) Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level. Heredity, 99, 364 373.
-
(2007)
Heredity
, vol.99
, pp. 364-373
-
-
Hughes, A.L.1
-
52
-
-
39749184167
-
The evolution of gene regulation underlies a morphological difference between two Drosophila sister species
-
Jeong S, Rebeiz M, Andolfatto P et al 2008) The evolution of gene regulation underlies a morphological difference between two Drosophila sister species. Cell, 132, 783 793.
-
(2008)
Cell
, vol.132
, pp. 783-793
-
-
Jeong, S.1
Rebeiz, M.2
Andolfatto, P.3
Al, E.4
-
53
-
-
34848901059
-
Adaptive evolution of conserved noncoding elements in mammals
-
Kim SY, Pritchard JK (2007) Adaptive evolution of conserved noncoding elements in mammals. Public Library of Science, Genetics, 3, 1572 1586.
-
(2007)
Public Library of Science, Genetics
, vol.3
, pp. 1572-1586
-
-
Kim, S.Y.1
Pritchard, J.K.2
-
54
-
-
0014421064
-
Evolutionary rate at molecular level
-
Kimura M (1968) Evolutionary rate at molecular level. Nature, 217, 624 626.
-
(1968)
Nature
, vol.217
, pp. 624-626
-
-
Kimura, M.1
-
55
-
-
0014680905
-
Non-Darwinian evolution
-
King JL, Jukes TH (1969) Non-Darwinian evolution. Science, 164, 788 798.
-
(1969)
Science
, vol.164
, pp. 788-798
-
-
King, J.L.1
Jukes, T.H.2
-
56
-
-
0016669094
-
Evolution at two levels in humans and chimpanzees
-
King MC, Wilson AC (1975) Evolution at two levels in humans and chimpanzees. Science, 188, 107 116.
-
(1975)
Science
, vol.188
, pp. 107-116
-
-
King, M.C.1
Wilson, A.C.2
-
57
-
-
50849122974
-
Patterns of positive selection in six mammalian genomes
-
Kosiol C, Viar T, da Fonseca RR et al 2008) Patterns of positive selection in six mammalian genomes. Public Library of Science, Genetics, 4, e1000144.
-
(2008)
Public Library of Science, Genetics
, vol.4
-
-
Kosiol, C.1
Viar, T.2
Da Fonseca, R.R.3
Al, E.4
-
58
-
-
39749084483
-
Evolution of protein-coding genes in Drosophila
-
Larracuente AM, Sackton TB, Greenberg AJ et al 2007) Evolution of protein-coding genes in Drosophila. Trends in Genetics, 24, 114 123.
-
(2007)
Trends in Genetics
, vol.24
, pp. 114-123
-
-
Larracuente, A.M.1
Sackton, T.B.2
Greenberg, A.J.3
Al, E.4
-
59
-
-
28644447707
-
Genome sequence, comparative analysis and haplotype structure of the domestic dog
-
Lindblad-Toh K, Wade CM, Mikkelsen TS et al 2005) Genome sequence, comparative analysis and haplotype structure of the domestic dog. Nature, 438, 803 819.
-
(2005)
Nature
, vol.438
, pp. 803-819
-
-
Lindblad-Toh, K.1
Wade, C.M.2
Mikkelsen, T.S.3
Al, E.4
-
60
-
-
33845212250
-
Anticipating the $1000 genome
-
Mardis ER (2006) Anticipating the $1000 genome. Genome Biology, 7, 112.
-
(2006)
Genome Biology
, vol.7
, pp. 112
-
-
Mardis, E.R.1
-
62
-
-
0026428610
-
Adaptive protein evolution at the Adh locus in Drosophila
-
McDonald JH, Kreitman M (1991) Adaptive protein evolution at the Adh locus in Drosophila. Nature, 351, 652 654.
-
(1991)
Nature
, vol.351
, pp. 652-654
-
-
McDonald, J.H.1
Kreitman, M.2
-
63
-
-
24344500211
-
Initial sequence of the chimpanzee genome and comparison with the human genome
-
Mikkelsen TS, Hillier LW, Eichler EE et al 2005) Initial sequence of the chimpanzee genome and comparison with the human genome. Nature, 437, 69 87.
-
(2005)
Nature
, vol.437
, pp. 69-87
-
-
Mikkelsen, T.S.1
Hillier, L.W.2
Eichler, E.E.3
Al, E.4
-
64
-
-
34248576291
-
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
-
Mikkelsen TS, Wakefield MJ, Aken B et al 2007) Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature, 447, 167 177.
-
(2007)
Nature
, vol.447
, pp. 167-177
-
-
Mikkelsen, T.S.1
Wakefield, M.J.2
Aken, B.3
Al, E.4
-
66
-
-
20444430245
-
A scan for positively selected genes in the genomes of humans and chimpanzees
-
Nielsen R, Bustamante C, Clark AG et al 2005) A scan for positively selected genes in the genomes of humans and chimpanzees. Public Library of Science, Biology, 3, 976 985.
-
(2005)
Public Library of Science, Biology
, vol.3
, pp. 976-985
-
-
Nielsen, R.1
Bustamante, C.2
Clark, A.G.3
Al, E.4
-
67
-
-
0033569387
-
The promise of comparative genomics in mammals
-
O'Brien SJ, Menotti-Raymond M, Murphy MJ et al 1999) The promise of comparative genomics in mammals. Science, 286, 458 462.
-
(1999)
Science
, vol.286
, pp. 458-462
-
-
O'Brien, S.J.1
Menotti-Raymond, M.2
Murphy, M.J.3
Al, E.4
-
69
-
-
0015722319
-
Slightly deleterious mutant substitutions in evolution
-
Ohta T (1973) Slightly deleterious mutant substitutions in evolution. Nature, 246, 96 98.
-
(1973)
Nature
, vol.246
, pp. 96-98
-
-
Ohta, T.1
-
70
-
-
30744469841
-
Evidence for purifying selection against synonymous mutations in mammalian exonic splicing enhancers
-
Parmley JL, Chamary JV, Hurst LD (2006) Evidence for purifying selection against synonymous mutations in mammalian exonic splicing enhancers. Molecular Biology and Evolution, 23, 301 309.
-
(2006)
Molecular Biology and Evolution
, vol.23
, pp. 301-309
-
-
Parmley, J.L.1
Chamary, J.V.2
Hurst, L.D.3
-
71
-
-
34548432104
-
Raising the estimate of functional human sequences
-
Pheasant M, Mattick JS (2007) Raising the estimate of functional human sequences. Genome Research, 17, 1245 1253.
-
(2007)
Genome Research
, vol.17
, pp. 1245-1253
-
-
Pheasant, M.1
Mattick, J.S.2
-
72
-
-
43249118306
-
Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes
-
Potrzebowski L, Vinckenbosch N, Marques AC, Chalmel F, Jégou B, Kaessmann H (2008) Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes. Public Library of Science, Biology, 6, e80.
-
(2008)
Public Library of Science, Biology
, vol.6
-
-
Potrzebowski, L.1
Vinckenbosch, N.2
Marques, A.C.3
Chalmel, F.4
Jégou, B.5
Kaessmann, H.6
-
73
-
-
33646191543
-
Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene
-
Prud'homme B, Gompel N, Rokas A et al 2006) Repeated morphological evolution through cis-regulatory changes in a pleiotropic gene. Nature, 440, 1050 1053.
-
(2006)
Nature
, vol.440
, pp. 1050-1053
-
-
Prud'Homme, B.1
Gompel, N.2
Rokas, A.3
Al, E.4
-
74
-
-
45749086679
-
The amphioxus genome and the evolution of the chordate karyotype
-
Putnam NH, Butts T, Ferrier DEK et al 2008) The amphioxus genome and the evolution of the chordate karyotype. Nature, 453, 1064 1071.
-
(2008)
Nature
, vol.453
, pp. 1064-1071
-
-
Putnam, N.H.1
Butts, T.2
Ferrier, D.E.K.3
Al, E.4
-
75
-
-
38749091304
-
Pyrobayes: An improved base caller for SNP discovery in pyrosequences
-
Quinlan AR, Stewart DA, Stromberg MP, Marth GT (2008) Pyrobayes: an improved base caller for SNP discovery in pyrosequences. Nature Methods, 5, 179 181.
-
(2008)
Nature Methods
, vol.5
, pp. 179-181
-
-
Quinlan, A.R.1
Stewart, D.A.2
Stromberg, M.P.3
Marth, G.T.4
-
76
-
-
38349134018
-
Sexual selection and the adaptive evolution of mammalian ejaculate proteins
-
Ramm SA, Oliver PL, Ponting CP, Stockley P, Emes RD (2008) Sexual selection and the adaptive evolution of mammalian ejaculate proteins. Molecular Biology and Evolution, 25, 207 219.
-
(2008)
Molecular Biology and Evolution
, vol.25
, pp. 207-219
-
-
Ramm, S.A.1
Oliver, P.L.2
Ponting, C.P.3
Stockley, P.4
Emes, R.D.5
-
77
-
-
45549107329
-
Use and misuse of the gene ontology annotations
-
Rhee SY, Wood V, Dolinski K, Draghici S (2008) Use and misuse of the gene ontology annotations. Nature Reviews Genetics, 9, 509 515.
-
(2008)
Nature Reviews Genetics
, vol.9
, pp. 509-515
-
-
Rhee, S.Y.1
Wood, V.2
Dolinski, K.3
Draghici, S.4
-
78
-
-
0034708444
-
Comparative genomics: Genome-wide analysis in metazoan eukaryotes
-
Rubin GM, Yandell MD, Wortman JR et al 2000) Comparative genomics: genome-wide analysis in metazoan eukaryotes. Science, 287, 2204 2215.
-
(2000)
Science
, vol.287
, pp. 2204-2215
-
-
Rubin, G.M.1
Yandell, M.D.2
Wortman, J.R.3
Al, E.4
-
79
-
-
0347380978
-
Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection
-
Sawyer SA, Kulathinal RJ, Bustamante CD, Hartl DL (2003) Bayesian analysis suggests that most amino acid replacements in Drosophila are driven by positive selection. Journal of Molecular Evolution, 57, S154 S164.
-
(2003)
Journal of Molecular Evolution
, vol.57
-
-
Sawyer, S.A.1
Kulathinal, R.J.2
Bustamante, C.D.3
Hartl, D.L.4
-
80
-
-
23744458086
-
Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes
-
Siepel A, Bejerano G, Pedersen JS et al 2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Research, 15, 1034 1050.
-
(2005)
Genome Research
, vol.15
, pp. 1034-1050
-
-
Siepel, A.1
Bejerano, G.2
Pedersen, J.S.3
Al, E.4
-
81
-
-
46649099510
-
1000 genomes project
-
Siva N (2008) 1000 genomes project. Nature Biotechnology, 26, 256.
-
(2008)
Nature Biotechnology
, vol.26
, pp. 256
-
-
Siva, N.1
-
82
-
-
4744370251
-
Evidence for turnover of functional noncoding DNA in mammalian genome evolution
-
Smith NGC, Brandstrom M, Ellegren H (2004) Evidence for turnover of functional noncoding DNA in mammalian genome evolution. Genomics, 84, 806 813.
-
(2004)
Genomics
, vol.84
, pp. 806-813
-
-
Smith, N.G.C.1
Brandstrom, M.2
Ellegren, H.3
-
83
-
-
0037186564
-
Adaptive protein evolution in Drosophila
-
Smith NGC, Eyre-Walker A (2002) Adaptive protein evolution in Drosophila. Nature, 415, 1022 1024.
-
(2002)
Nature
, vol.415
, pp. 1022-1024
-
-
Smith, N.G.C.1
Eyre-Walker, A.2
-
84
-
-
34548694067
-
Adaptive variation in beach mice produced by two interacting pigmentation genes
-
Steiner CC, Weber JN, Hoekstra HE (2007) Adaptive variation in beach mice produced by two interacting pigmentation genes. Public Library of Science, Biology, 5, 1880 1889.
-
(2007)
Public Library of Science, Biology
, vol.5
, pp. 1880-1889
-
-
Steiner, C.C.1
Weber, J.N.2
Hoekstra, H.E.3
-
86
-
-
40949091938
-
Insertion-deletion polymorphisms (indels) as genetic markers in natural populations
-
Väli U, Brandström M, Johansson M, Ellegren H (2008) Insertion-deletion polymorphisms (indels) as genetic markers in natural populations. BMC Genetics, 9, 8.
-
(2008)
BMC Genetics
, vol.9
, pp. 8
-
-
Väli, U.1
Brandström, M.2
Johansson, M.3
Ellegren, H.4
-
87
-
-
41149167170
-
Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing
-
Vera JC, Wheat CW, Fescemyer HW et al 2008) Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing. Molecular Ecology, 17, 1636 1647.
-
(2008)
Molecular Ecology
, vol.17
, pp. 1636-1647
-
-
Vera, J.C.1
Wheat, C.W.2
Fescemyer, H.W.3
Al, E.4
-
88
-
-
43449123631
-
Genome analysis of the platypus reveals unique signatures of evolution
-
Warren WC, Hillier LW, Graves JAM et al 2008) Genome analysis of the platypus reveals unique signatures of evolution. Nature, 453, 175 183.
-
(2008)
Nature
, vol.453
, pp. 175-183
-
-
Warren, W.C.1
Hillier, L.W.2
Graves, J.A.M.3
Al, E.4
-
89
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, Lindblad-Toh K, Birney E et al 2002) Initial sequencing and comparative analysis of the mouse genome. Nature, 420, 520 562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
Lindblad-Toh, K.2
Birney, E.3
Al, E.4
-
90
-
-
42249087308
-
The complete genome of an individual by massively parallel DNA sequencing
-
Wheeler DA, Srinirasan M, Egholm M et al 2008) The complete genome of an individual by massively parallel DNA sequencing. Nature, 452, 872 876.
-
(2008)
Nature
, vol.452
, pp. 872-876
-
-
Wheeler, D.A.1
Srinirasan, M.2
Egholm, M.3
Al, E.4
-
91
-
-
46249096804
-
Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution
-
Wilhelm BT, Marguerat S, Watt S et al 2008) Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution. Nature, 453, 1239 1243.
-
(2008)
Nature
, vol.453
, pp. 1239-1243
-
-
Wilhelm, B.T.1
Marguerat, S.2
Watt, S.3
Al, E.4
-
92
-
-
10644271562
-
A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms
-
Wong GKS, Liu B, Wang J et al 2004) A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms. Nature, 432, 717 722.
-
(2004)
Nature
, vol.432
, pp. 717-722
-
-
Wong, G.K.S.1
Liu, B.2
Wang, J.3
Al, E.4
-
93
-
-
34547803197
-
Paml 4: Phylogenetic analysis by maximum likelihood
-
Yang Z (2007) paml 4: phylogenetic analysis by maximum likelihood. Molecular Biology and Evolution, 24, 1586 1591.
-
(2007)
Molecular Biology and Evolution
, vol.24
, pp. 1586-1591
-
-
Yang, Z.1
|