메뉴 건너뛰기




Volumn 432, Issue 7018, 2004, Pages 717-722

A genetic variation map for chicken with 2.8 million single-nucleotide polymorphisms

(114)  Wong, Gane Ka Shu a,b,c   Liu, Bin a   Wang, Jun a,b   Zhang, Yong a,d   Yang, Xu a   Zhang, Zengjin a   Meng, Qingshun a   Zhou, Jun a   Li, Dawei a   Zhang, Jingjing a   Ni, Peixiang a   Li, Songgang a,d   Ran, Longhua e   Li, Heng a,f   Zhang, Jianguo a   Li, Ruiqiang a   Li, Shengting a   Zheng, Hongkun a   Lin, Wei a   Li, Guangyuan a   more..


Author keywords

[No Author keywords available]

Indexed keywords

BIODIVERSITY; DATA REDUCTION; GENES;

EID: 10644271562     PISSN: 00280836     EISSN: None     Source Type: Journal    
DOI: 10.1038/nature03156     Document Type: Article
Times cited : (379)

References (48)
  • 1
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • doi:10.1038/nature03154 (this issue)
    • International Chicken Genome Sequencing Consortium. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature doi:10.1038/ nature03154 (this issue).
    • Nature
  • 2
    • 0012869360 scopus 로고    scopus 로고
    • Avian genetic resources at risk: An assessment and proposal for conservation of genetic stocks in the USA and Canada
    • Pisenti, J. M. et al. Avian genetic resources at risk: an assessment and proposal for conservation of genetic stocks in the USA and Canada. Avian Poultry Biol. Rev. 12, 1-102 (2001).
    • (2001) Avian Poultry Biol. Rev. , vol.12 , pp. 1-102
    • Pisenti, J.M.1
  • 3
    • 48849115901 scopus 로고    scopus 로고
    • Use of chicken models for the analysis of human disease
    • (eds Dracopoli, N. C. et al.) (Wiley, Hoboken
    • Dodgson, J. B. & Romanov, M. N. Use of chicken models for the analysis of human disease. In Current Protocols in Human Genetics (eds Dracopoli, N. C. et al.) 15.5.1-15.5.11 (Wiley, Hoboken, 2004).
    • (2004) Current Protocols in Human Genetics
    • Dodgson, J.B.1    Romanov, M.N.2
  • 4
    • 0037245989 scopus 로고    scopus 로고
    • Online Mendelian Inheritance in Animals (OMIA): A comparative knowledgebase of genetic disorders and other familial traits in non-laboratory animals
    • Nicholas, F. W. Online Mendelian Inheritance in Animals (OMIA): a comparative knowledgebase of genetic disorders and other familial traits in non-laboratory animals. Nucleic Acids Res. 31, 275-277 (2003).
    • (2003) Nucleic Acids Res. , vol.31 , pp. 275-277
    • Nicholas, F.W.1
  • 5
    • 10644256046 scopus 로고    scopus 로고
    • Animal Breeding and Genetics Group of Wageningen University. ChickAce (https://acedb.asg.wur.nl) (2004).
    • (2004) ChickAce
  • 6
    • 0033962741 scopus 로고    scopus 로고
    • A consensus linkage map of the chicken genome
    • Groenen, M. A. et al. A consensus linkage map of the chicken genome. Genome Res. 10, 137-147 (2000).
    • (2000) Genome Res. , vol.10 , pp. 137-147
    • Groenen, M.A.1
  • 7
    • 0043202324 scopus 로고    scopus 로고
    • Structural genomics: Integrating linkage, physical and sequence maps
    • (eds Muir, W. M. & Aggrey, S. E.) (CABI, Wallingford
    • Groenen, M. A. & Crooijmans, R. P. Structural genomics: integrating linkage, physical and sequence maps. In Poultry Genetics, Breeding and Biotechnology (eds Muir, W. M. & Aggrey, S. E.) 497-536 (CABI, Wallingford, 2003).
    • (2003) Poultry Genetics, Breeding and Biotechnology , pp. 497-536
    • Groenen, M.A.1    Crooijmans, R.P.2
  • 8
    • 0035983148 scopus 로고    scopus 로고
    • A review on SNP and other types of molecular markers and their use in animal genetics
    • Vignal, A., Milan, D., SanCristobal, M. & Eggen, A. A review on SNP and other types of molecular markers and their use in animal genetics. Genet. Sel. Evol. 34, 275-305 (2002).
    • (2002) Genet. Sel. Evol. , vol.34 , pp. 275-305
    • Vignal, A.1    Milan, D.2    SanCristobal, M.3    Eggen, A.4
  • 9
    • 1542350622 scopus 로고    scopus 로고
    • Domestic-animal genomics: Deciphering the genetics of complex traits
    • Andersson, L. & Georges, M. Domestic-animal genomics: deciphering the genetics of complex traits. Nature Rev. Genet. 5, 202-212 (2004).
    • (2004) Nature Rev. Genet. , vol.5 , pp. 202-212
    • Andersson, L.1    Georges, M.2
  • 10
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
    • Begun, D. J. & Aquadro, C. F. Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356, 519-520 (1992).
    • (1992) Nature , vol.356 , pp. 519-520
    • Begun, D.J.1    Aquadro, C.F.2
  • 11
    • 0035451450 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms and recombination rate in humans
    • Nachman, M. W. Single nucleotide polymorphisms and recombination rate in humans. Trends Genet. 9, 481-485 (2001).
    • (2001) Trends Genet. , vol.9 , pp. 481-485
    • Nachman, M.W.1
  • 13
    • 2942538192 scopus 로고    scopus 로고
    • Reduced variation on the chicken Z chromosome
    • Sundstrom, H., Webster, M. T. & Ellegren, H. Reduced variation on the chicken Z chromosome. Genetics 167, 377-385 (2004).
    • (2004) Genetics , vol.167 , pp. 377-385
    • Sundstrom, H.1    Webster, M.T.2    Ellegren, H.3
  • 14
    • 2442516186 scopus 로고    scopus 로고
    • Quantitative trait loci for muscling in a broiler layer cross
    • Ikeobi, C. O. et al. Quantitative trait loci for muscling in a broiler layer cross. Livest. Prod. Sci. 87, 143-151 (2004).
    • (2004) Livest. Prod. Sci. , vol.87 , pp. 143-151
    • Ikeobi, C.O.1
  • 15
    • 0036984812 scopus 로고    scopus 로고
    • Mapping of quantitative trait loci for body weight at three, six, and nine weeks of age in a broiler layer cross
    • Sewalem, A. et al. Mapping of quantitative trait loci for body weight at three, six, and nine weeks of age in a broiler layer cross. Poultry Sci. 81, 1775-1781 (2002).
    • (2002) Poultry Sci. , vol.81 , pp. 1775-1781
    • Sewalem, A.1
  • 16
    • 0037534450 scopus 로고    scopus 로고
    • Chicken quantitative trait loci for growth and body composition associated with transforming growth factor-β genes
    • Li, H. et al. Chicken quantitative trait loci for growth and body composition associated with transforming growth factor-β genes. Poultry Sci. 82, 347-356 (2003).
    • (2003) Poultry Sci. , vol.82 , pp. 347-356
    • Li, H.1
  • 17
    • 0041961117 scopus 로고    scopus 로고
    • Genetic markers associated with antibody response kinetics in adult chickens
    • Zhou, H., Li, H. & Lamont, S. J. Genetic markers associated with antibody response kinetics in adult chickens. Poultry Sci. 82, 699-708 (2003).
    • (2003) Poultry Sci. , vol.82 , pp. 699-708
    • Zhou, H.1    Li, H.2    Lamont, S.J.3
  • 18
    • 10644284300 scopus 로고    scopus 로고
    • Cytokine genetics-polymorphisms, functional variations and disease associations
    • (eds Thomson, A. W. & Lotze, M. T.) (Academic, London)
    • Gallagher, G., Eskdale, J. & Bidwell, J. L. Cytokine genetics-polymorphisms, functional variations and disease associations. In The Cytokine Handbook 4th edn (eds Thomson, A. W. & Lotze, M. T.) 19-55 (Academic, London, 2003).
    • (2003) The Cytokine Handbook 4th Edn. , pp. 19-55
    • Gallagher, G.1    Eskdale, J.2    Bidwell, J.L.3
  • 20
    • 0016220238 scopus 로고
    • The hitch-hiking effect of a favourable gene
    • Maynard-Smith, J. & Haigh, J. The hitch-hiking effect of a favourable gene. Genet. Res. 23, 23-35 (1974).
    • (1974) Genet. Res. , vol.23 , pp. 23-35
    • Maynard-Smith, J.1    Haigh, J.2
  • 21
    • 0242363235 scopus 로고    scopus 로고
    • A regulatory mutation in IGf2 causes a major QTL effect on muscle growth in the pig
    • Van Laere, A. S. et al. A regulatory mutation in IGf2 causes a major QTL effect on muscle growth in the pig. Nature 425, 832-836 (2003).
    • (2003) Nature , vol.425 , pp. 832-836
    • Van Laere, A.S.1
  • 22
    • 0033360995 scopus 로고    scopus 로고
    • When less is more: Gene loss as an engine of evolutionary change
    • Olson, M. V. When less is more: gene loss as an engine of evolutionary change. Am. J. Hum. Genet. 64, 18-23 (1999).
    • (1999) Am. J. Hum. Genet. , vol.64 , pp. 18-23
    • Olson, M.V.1
  • 23
    • 16944364045 scopus 로고    scopus 로고
    • A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle
    • Grobet, L. et al. A deletion in the bovine myostatin gene causes the double-muscled phenotype in cattle. Nature Genet. 17, 71-74 (1997).
    • (1997) Nature Genet. , vol.17 , pp. 71-74
    • Grobet, L.1
  • 24
    • 0035026704 scopus 로고    scopus 로고
    • Predicting deleterious amino acid substitutions
    • Ng, P. C. & Henikoff, S. Predicting deleterious amino acid substitutions. Genome Res. 11, 863-874 (2001).
    • (2001) Genome Res. , vol.11 , pp. 863-874
    • Ng, P.C.1    Henikoff, S.2
  • 25
    • 0029937073 scopus 로고    scopus 로고
    • Partial duplication [dup. TCAC (178)] and novel point mutations (T125M, G188R, A209V, and H302L) of the ornithine transcarbamylase gene in congenital hyperammonemia
    • Gilbert-Dussardier, B. et al. Partial duplication [dup. TCAC (178)] and novel point mutations (T125M, G188R, A209V, and H302L) of the ornithine transcarbamylase gene in congenital hyperammonemia. Hum. Mutat. 8, 74-76 (1996).
    • (1996) Hum. Mutat. , vol.8 , pp. 74-76
    • Gilbert-Dussardier, B.1
  • 26
    • 50549174317 scopus 로고
    • Enzymes of arginine metabolism in chicks
    • Tamir, H. & Ratner, S. Enzymes of arginine metabolism in chicks. Arch. Biochem. Biophys. 102, 249-258 (1963).
    • (1963) Arch. Biochem. Biophys. , vol.102 , pp. 249-258
    • Tamir, H.1    Ratner, S.2
  • 27
    • 0035865322 scopus 로고    scopus 로고
    • A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms
    • Sachidanandam, R. et al. A map of human genome sequence variation containing 1.42 million single nucleotide polymorphisms. Nature 409, 928-933 (2001).
    • (2001) Nature , vol.409 , pp. 928-933
    • Sachidanandam, R.1
  • 28
    • 2442653898 scopus 로고    scopus 로고
    • Genetic structure of the purebred domestic dog
    • Parker, H. G. et al. Genetic structure of the purebred domestic dog. Science 304, 1160-1164 (2004).
    • (2004) Science , vol.304 , pp. 1160-1164
    • Parker, H.G.1
  • 30
    • 17044441930 scopus 로고    scopus 로고
    • Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouse
    • Lindblad-Toh, K. et al. Large-scale discovery and genotyping of single-nucleotide polymorphisms in the mouse. Nature Genet. 24, 381-386 (2000).
    • (2000) Nature Genet. , vol.24 , pp. 381-386
    • Lindblad-Toh, K.1
  • 31
    • 2942526369 scopus 로고    scopus 로고
    • Male-biased mutation rate and divergence in autosomal, Z-linked and W-linked introns of chicken and turkey
    • Axelsson, E., Smith, N. G., Sundstrom, H., Berlin, S. & Ellegren, H. Male-biased mutation rate and divergence in autosomal, Z-linked and W-linked introns of chicken and turkey. Mol. Biol. Evol. 21, 1538-1547 (2004).
    • (2004) Mol. Biol. Evol. , vol.21 , pp. 1538-1547
    • Axelsson, E.1    Smith, N.G.2    Sundstrom, H.3    Berlin, S.4    Ellegren, H.5
  • 33
    • 10644297699 scopus 로고    scopus 로고
    • Industrial perspective on problems and issues associated with poultry breeding
    • (eds Muir, W. M. & Aggrey, S. E.) (CABI, Wallingford
    • Arthur, J. A. & Albers, G. A. Industrial perspective on problems and issues associated with poultry breeding. In Poultry Genetics, Breeding and Biotechnology (eds Muir, W. M. & Aggrey, S. E.) 1-12 (CABI, Wallingford, 2003).
    • (2003) Poultry Genetics, Breeding and Biotechnology , pp. 1-12
    • Arthur, J.A.1    Albers, G.A.2
  • 34
    • 0041488856 scopus 로고    scopus 로고
    • The twofold difference in adult size between the red junglefowl and White Leghorn chickens is largely explained by a limited number of QTLs
    • Kerje, S. et al. The twofold difference in adult size between the red junglefowl and White Leghorn chickens is largely explained by a limited number of QTLs. Anim. Genet, 34, 264-274 (2003).
    • (2003) Anim. Genet. , vol.34 , pp. 264-274
    • Kerje, S.1
  • 36
    • 0000951360 scopus 로고
    • Scandinavian selection and cross-breeding experiment with laying hens. 1. Background and general outline
    • Liljedahl, L. E., Kolstad, N., Sorensen, P. & Maijala, K. Scandinavian selection and cross-breeding experiment with laying hens. 1. Background and general outline. Acta Agricult. Scand. 29, 273-285 (1979).
    • (1979) Acta Agricult. Scand. , vol.29 , pp. 273-285
    • Liljedahl, L.E.1    Kolstad, N.2    Sorensen, P.3    Maijala, K.4
  • 37
    • 0035988462 scopus 로고    scopus 로고
    • The origin and genetic diversity of Chinese native chicken breeds
    • Niu, D. et al. The origin and genetic diversity of Chinese native chicken breeds. Biochem. Genet. 40, 163-174 (2002).
    • (2002) Biochem. Genet. , vol.40 , pp. 163-174
    • Niu, D.1
  • 38
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing, B., Hillier, L., Wendl, M. C. & Green, P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8, 175-185 (1998).
    • (1998) Genome Res. , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 39
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing, B. & Green, P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8, 186-194 (1998).
    • (1998) Genome Res. , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 40
    • 0034727107 scopus 로고    scopus 로고
    • A SNP map of the human genome generated by reduced representation shotgun sequencing
    • Altshuler, D. et al. A SNP map of the human genome generated by reduced representation shotgun sequencing. Nature 407, 513-516 (2000).
    • (2000) Nature , vol.407 , pp. 513-516
    • Altshuler, D.1
  • 41
    • 10644267190 scopus 로고    scopus 로고
    • Green, P. CrossMatch (http://www.phrap.org/phredphrapconsed. html#block_phrap) (2004).
    • (2004) CrossMatch
    • Green, P.1
  • 42
    • 0032991552 scopus 로고    scopus 로고
    • Characterization of single-nucleotide polymorphisms in coding regions of human genes
    • Cargill, M. et al. Characterization of single-nucleotide polymorphisms in coding regions of human genes. Nature Genet. 22, 231-238 (1999).
    • (1999) Nature Genet. , vol.22 , pp. 231-238
    • Cargill, M.1
  • 43
    • 10644240375 scopus 로고    scopus 로고
    • A large collection of bursal full-length cDNA sequences to facilitate gene function analysis
    • in the press
    • Caldwell, R. et al. A large collection of bursal full-length cDNA sequences to facilitate gene function analysis. Genome Biol. (in the press).
    • Genome Biol.
    • Caldwell, R.1
  • 44
    • 19944431653 scopus 로고    scopus 로고
    • Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags
    • in the press
    • Hubbard, S. J. et al. Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags. Genome Res. (in the press).
    • Genome Res.
    • Hubbard, S.J.1
  • 45
    • 0036226603 scopus 로고    scopus 로고
    • BLAT - The BLAST-like alignment tool
    • Kent, W. J. BLAT - the BLAST-like alignment tool. Genome Res. 12, 656-664 (2002).
    • (2002) Genome Res. , vol.12 , pp. 656-664
    • Kent, W.J.1
  • 46
    • 0031732094 scopus 로고    scopus 로고
    • A computer program for aligning a cDNA sequence with a genomic DNA sequence
    • Florea, L., Hartzell, G., Zhang, Z., Rubin, G. M. & Miller, W. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res. 8, 967-974 (1998).
    • (1998) Genome Res. , vol.8 , pp. 967-974
    • Florea, L.1    Hartzell, G.2    Zhang, Z.3    Rubin, G.M.4    Miller, W.5
  • 47
    • 13444312068 scopus 로고    scopus 로고
    • ChickVD: A sequence variation database for the chicken genome
    • in the press
    • Wang, J. et al. ChickVD: a sequence variation database for the chicken genome. Nucleic Acids Res. (in the press).
    • Nucleic Acids Res.
    • Wang, J.1
  • 48
    • 8644243850 scopus 로고    scopus 로고
    • Chicken W - A genetically uniform chromosome in a highly variable genome
    • Berlin, S. & Ellegren, H. Chicken W - a genetically uniform chromosome in a highly variable genome. Proc. Natl Acad. Sci. USA 101, 15967-15969 (2004).
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 15967-15969
    • Berlin, S.1    Ellegren, H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.